RLG00000016536

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011119
Physical Location & Seq
Reverse (-)
7424937 .. 7475407
50471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016536

Sequence Viewer

Length: 1077 bp
ATGGCTCCTCCTCCTCGTTTGACGCTGGTCCTGTCCCTCTTGGCCGTGGTTCTGATCACCTGCGCCGCGTCCAGCTTCGATGAGTCCAACCCCATCCGATTGGTCTCCGACGGCCTCCGTGAACTGGAGGACCAGGTTGTCCAAGTCCTCGGCCAGGTTTGCCACGTCCGCTCCTTCGCTCGGTTTGCTTACAGGTACGAGAAGAGGTACGAGAGCGTGGAGGAGATGAGGCGGCGATTCGAGATTTTCGCCGAGAACAAGAAGCTGATTCGATCCACCAACAGGAAGGGCTTGTCTTACAAGCTCGGTGTTAACCGGTTTGCTGATTGGACTTGGGAAGAGTTCCAGAGGCATAGGTTGGGGGCTGCTCAGAACTGCTCTGCCACTACTAAGGGCAACCACAAGCTCACCGACGCTGTTCCACCTCTCACGAAAAACTGGAGAGACGAAGGCATAGTCACCCCAGTTAAAGACCAAGGCCACTGTGGATCTTGCTGGACATTCAGTACCACTGGAGCTCTTGAGGCAGCTTATGTACAAGCATTTGGCAAGCAAATCTCTCTGTCCGAACAGCAGCTTGTGGATTGTGCTGGAGCTTTCAACAACTTTGGGTGCAGCGGTGGGTTGCCATCTCAAGCCTTTGAGTACATCAAATACAACGGCGGTCTTGACACCGAGCAAGCATATCCTTACACCGCAGTAGATGGTGCCTGTAAATTTTCATCTGAAAATGTTGGTGTCCGAGTCCTCGACTCTGTCAATATTACCCTGAATGATGAGGAAGAATTGAAGCATGCGGTTGCATTTGTTAGGCCAGTCAGCGTAGCATTCCAGGTGGTCCAAGATTTCCGATTGTATAAGTCGGGAGTTTACACCAGTGAGACATGCGGCAACACTCCCATGGATGTGAACCATGCTGTTCTTGCTGTTGGATATGGAGTGGAAAACGGTGTCCCGTACTGGCTCATTAAGAACTCCTGGGGGCAAAGCTGGGGTGACAATGGCTACTTCAAGATGGAGTATGGGAAGAACATGTGTGGTATTGCAACTTGTGCTTCCTACCCGGTTGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.81

Weight (kDa)

6.34

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 59 - 115 3.5e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 142 - 356 3.3e-81 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 68
AciI CCGC 8 cut(s) 66, 169, 232, 618, 663, 696, 797, 888
AclWI GGATC 2 cut(s) 267, 496
AcoI YGGCCR 2 cut(s) 42, 151
AcsI RAATTY 1 cut(s) 716
AfaI GTAC 6 cut(s) 197, 209, 508, 537, 647, 959
AfiI CCNNNNNNNGG 4 cut(s) 124, 154, 180, 282
AflIII ACRYGT 1 cut(s) 1032
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 601, 790, 1012
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 4 cut(s) 132, 153, 831, 977
AluBI AGCT 9 cut(s) 75, 265, 304, 406, 518, 530, 577, 596, 990
AluI AGCT 9 cut(s) 75, 265, 304, 406, 518, 530, 577, 596, 990
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 3 cut(s) 109, 438, 875
AlwI GGATC 2 cut(s) 267, 496
AoxI GGCC 5 cut(s) 42, 112, 151, 478, 812
ApeKI GCWGC 4 cut(s) 365, 527, 574, 615
ApoI RAATTY 1 cut(s) 716
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AsiGI ACCGGT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 28, 130, 838
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 4 cut(s) 49, 400, 451, 1007
AvaII GGWCC 3 cut(s) 28, 130, 838
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 4 cut(s) 352, 539, 586, 627
BccI CCATC 4 cut(s) 101, 637, 698, 1009
BceAI ACGGC 3 cut(s) 29, 127, 676
BciT130I CCWGG 4 cut(s) 134, 155, 833, 979
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 3 cut(s) 109, 438, 875
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 7 cut(s) 66, 233, 366, 528, 575, 616, 889
BlsI GCNGC 7 cut(s) 67, 234, 367, 529, 576, 617, 890
Bme1390I CCNGG 5 cut(s) 134, 155, 833, 979, 1064
Bme18I GGWCC 3 cut(s) 28, 130, 838
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 28, 130, 838
BmiI GGNNCC 2 cut(s) 6, 709
BmrFI CCNGG 5 cut(s) 134, 155, 833, 979, 1064
BmrI ACTGGG 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 458
BoxI GACNNNNGTC 1 cut(s) 26
BpmI CTGGAG 4 cut(s) 146, 460, 534, 612
BpuEI CTTGAG 2 cut(s) 542, 618
BpuMI CCSGG 1 cut(s) 1064
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 5 cut(s) 45, 148, 475, 900, 978
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 154, 180, 282
Bse118I RCCGGY 1 cut(s) 315
Bse1I ACTGG 7 cut(s) 129, 443, 464, 517, 815, 876, 965
BseBI CCWGG 4 cut(s) 134, 155, 833, 979
BseDI CCNNGG 5 cut(s) 45, 148, 475, 900, 978
BseGI GGATG 2 cut(s) 93, 910
BseLI CCNNNNNNNGG 4 cut(s) 124, 154, 180, 282
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 7 cut(s) 129, 443, 464, 517, 815, 876, 965
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 352, 539, 586, 627
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 5 cut(s) 44, 114, 153, 480, 814
BshNI GGYRCC 1 cut(s) 707
BshTI ACCGGT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 2 cut(s) 316, 1064
BslFI GGGAC 2 cut(s) 19, 938
BslI CCNNNNNNNGG 4 cut(s) 124, 154, 180, 282
BsmAI GTCTC 3 cut(s) 109, 438, 875
BsmBI CGTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 19, 938
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 5 cut(s) 44, 114, 153, 480, 814
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 3 cut(s) 54, 272, 488
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 8 cut(s) 66, 169, 232, 618, 663, 696, 797, 888
BspANI GGCC 5 cut(s) 44, 114, 153, 480, 814
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 6, 709
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 2 cut(s) 267, 496
BspT107I GGYRCC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 7 cut(s) 129, 443, 464, 517, 815, 876, 965
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 5 cut(s) 45, 148, 475, 900, 978
BssMI GATC 3 cut(s) 54, 272, 488
BssT1I CCWWGG 2 cut(s) 475, 900
Bst2UI CCWGG 4 cut(s) 134, 155, 833, 979
Bst4CI ACNGT 2 cut(s) 485, 950
Bst6I CTCTTC 2 cut(s) 197, 333
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 551, 681, 795
BstDEI CTNAG 2 cut(s) 369, 390
BstDSI CCRYGG 2 cut(s) 45, 900
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 93, 910
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 57, 275, 491
BstMAI GTCTC 3 cut(s) 109, 438, 875
BstMBI GATC 3 cut(s) 54, 272, 488
BstMWI GCNNNNNNNGC 6 cut(s) 159, 168, 185, 524, 923, 1052
BstNI CCWGG 4 cut(s) 134, 155, 833, 979
BstNSI RCATGY 3 cut(s) 797, 888, 1036
BstPAI GACNNNNGTC 1 cut(s) 26
BstSCI CCNGG 5 cut(s) 132, 153, 831, 977, 1062
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 352, 539, 586, 627
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 5 cut(s) 44, 114, 153, 480, 814
BtgI CCRYGG 2 cut(s) 45, 900
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 93, 910
BtsIMutI CAGTG 3 cut(s) 481, 510, 883
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 3 cut(s) 551, 681, 795
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 3 cut(s) 28, 130, 838
CseI GACGC 3 cut(s) 31, 57, 422
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 6 cut(s) 196, 208, 507, 536, 646, 958
CspAI ACCGGT 1 cut(s) 315
CviAII CATG 5 cut(s) 794, 885, 901, 914, 1033
CviQI GTAC 6 cut(s) 196, 208, 507, 536, 646, 958
DdeI CTNAG 2 cut(s) 369, 390
DpnI GATC 3 cut(s) 56, 274, 490
DpnII GATC 3 cut(s) 54, 272, 488
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 42, 151
Eam1104I CTCTTC 2 cut(s) 197, 333
EarI CTCTTC 2 cut(s) 197, 333
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 475, 900
Eco24I GRGCYC 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 28, 130, 838
Eco53kI GAGCTC 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoRII CCWGG 4 cut(s) 132, 153, 831, 977
EcoT14I CCWWGG 2 cut(s) 475, 900
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 475, 900
Esp3I CGTCTC 1 cut(s) 438
FaeI CATG 5 cut(s) 797, 888, 904, 917, 1036
FaqI GGGAC 2 cut(s) 19, 938
FatI CATG 5 cut(s) 793, 884, 900, 913, 1032
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 7 cut(s) 66, 233, 366, 528, 575, 616, 889
FokI GGATG 2 cut(s) 80, 917
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 7 cut(s) 66, 233, 366, 528, 575, 616, 889
GlaI GCGC 1 cut(s) 64
GluI GCNGC 7 cut(s) 66, 233, 366, 528, 575, 616, 889
GsaI CCCAGC 1 cut(s) 994
GsuI CTGGAG 4 cut(s) 146, 460, 534, 612
HaeIII GGCC 5 cut(s) 44, 114, 153, 480, 814
HapII CCGG 2 cut(s) 316, 1064
HgaI GACGC 3 cut(s) 31, 57, 422
HhaI GCGC 1 cut(s) 65
Hin1II CATG 5 cut(s) 797, 888, 904, 917, 1036
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 5 cut(s) 83, 237, 268, 744, 752
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 2 cut(s) 316, 1064
HphI GGTGA 4 cut(s) 49, 400, 451, 1007
Hpy166II GTNNAC 4 cut(s) 122, 313, 871, 910
Hpy188I TCNGA 8 cut(s) 54, 98, 109, 372, 568, 727, 743, 851
Hpy188III TCNNGA 7 cut(s) 241, 346, 430, 521, 668, 864, 1012
Hpy8I GTNNAC 4 cut(s) 122, 313, 871, 910
Hpy99I CGWCG 2 cut(s) 113, 416
HpyAV CCTTC 3 cut(s) 184, 280, 443
HpyCH4III ACNGT 2 cut(s) 485, 950
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 615, 803, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 168, 185, 524, 923, 1052
HpyF3I CTNAG 2 cut(s) 369, 390
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 5 cut(s) 797, 888, 904, 917, 1036
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 3 cut(s) 54, 272, 488
LmnI GCTCC 4 cut(s) 10, 176, 515, 593
Lsp1109I GCAGC 4 cut(s) 352, 539, 586, 627
MabI ACCWGGT 1 cut(s) 132
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 457, 995, 1069
MalI GATC 3 cut(s) 56, 274, 490
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 54, 272, 488
MboII GAAGA 4 cut(s) 214, 350, 794, 1039
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 716, 785
MlyI GAGTC 3 cut(s) 92, 746, 753
MmeI TCCRAC 3 cut(s) 111, 132, 910
MseI TTAA 4 cut(s) 312, 468, 969, 1075
MslI CAYNNNNRTG 2 cut(s) 899, 905
MspA1I CMGCKG 1 cut(s) 618
MspI CCGG 2 cut(s) 316, 1064
MspR9I CCNGG 5 cut(s) 134, 155, 833, 979, 1064
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 4 cut(s) 134, 155, 833, 979
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 6 cut(s) 159, 168, 185, 524, 923, 1052
NciI CCSGG 1 cut(s) 1064
NcoI CCATGG 1 cut(s) 900
NdeII GATC 3 cut(s) 54, 272, 488
NlaIII CATG 5 cut(s) 797, 888, 904, 917, 1036
NlaIV GGNNCC 2 cut(s) 6, 709
NmeAIII GCCGAG 2 cut(s) 129, 277
NmuCI GTSAC 3 cut(s) 457, 995, 1069
NspI RCATGY 3 cut(s) 797, 888, 1036
PaeI GCATGC 1 cut(s) 797
PaqCI CACCTGC 1 cut(s) 68
PciI ACATGT 1 cut(s) 1032
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 237, 268
PflFI GACNNNGTC 1 cut(s) 755
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 7 cut(s) 67, 234, 367, 529, 576, 617, 890
PleI GAGTC 3 cut(s) 91, 746, 752
PpsI GAGTC 3 cut(s) 91, 746, 752
PscI ACATGT 1 cut(s) 1032
PshAI GACNNNNGTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 4 cut(s) 132, 153, 831, 977
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 4 cut(s) 132, 153, 831, 977
PspN4I GGNNCC 2 cut(s) 6, 709
PspPI GGNCC 3 cut(s) 28, 130, 838
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 1 cut(s) 755
RsaI GTAC 6 cut(s) 197, 209, 508, 537, 647, 959
RsaNI GTAC 6 cut(s) 196, 208, 507, 536, 646, 958
RseI CAYNNNNRTG 2 cut(s) 899, 905
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 4 cut(s) 312, 468, 969, 1075
SatI GCNGC 7 cut(s) 66, 233, 366, 528, 575, 616, 889
Sau3AI GATC 3 cut(s) 54, 272, 488
Sau96I GGNCC 3 cut(s) 28, 130, 838
SchI GAGTC 3 cut(s) 92, 746, 753
ScrFI CCNGG 5 cut(s) 134, 155, 833, 979, 1064
SduI GDGCHC 1 cut(s) 520
SexAI ACCWGGT 1 cut(s) 132
SinI GGWCC 3 cut(s) 28, 130, 838
SmiMI CAYNNNNRTG 2 cut(s) 899, 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SphI GCATGC 1 cut(s) 797
Sse9I AATT 2 cut(s) 716, 785
SsiI CCGC 8 cut(s) 66, 169, 232, 618, 663, 696, 797, 888
SspI AATATT 1 cut(s) 763
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 5 cut(s) 132, 153, 831, 977, 1062
StyI CCWWGG 2 cut(s) 475, 900
TaaI ACNGT 2 cut(s) 485, 950
TaiI ACGT 1 cut(s) 168
TaqI TCGA 4 cut(s) 78, 240, 271, 750
TasI AATT 2 cut(s) 716, 785
TatI WGTACW 2 cut(s) 535, 645
TauI GCSGC 3 cut(s) 68, 235, 891
TfiI GAWTC 2 cut(s) 237, 268
Tru1I TTAA 4 cut(s) 312, 468, 969, 1075
Tru9I TTAA 4 cut(s) 312, 468, 969, 1075
TscAI CASTG 3 cut(s) 488, 517, 883
TseFI GTSAC 3 cut(s) 457, 995, 1069
TseI GCWGC 4 cut(s) 365, 527, 574, 615
Tsp45I GTSAC 3 cut(s) 457, 995, 1069
TspDTI ATGAA 1 cut(s) 711
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 3 cut(s) 488, 517, 883
Tth111I GACNNNGTC 1 cut(s) 755
VpaK11BI GGWCC 3 cut(s) 28, 130, 838
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 716
XceI RCATGY 3 cut(s) 797, 888, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.