MD01G1180900.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011119
Physical Location & Seq
Forward (+)
28007834 .. 28008718
885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1180900.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGAAGGCAAATCGTACCAAAGGCTCCCGCGCGTCAAAATCTTCGAAATGCGTGACGACTACGTGAAGTTTGAGCTCCGCGACACTGACGCCAGCATCGCCAACGCACTTCGCCGCGTCATGATTGCCGAGGTCCCCACCGTCGCCATCACCCTCGTCGAGATCGAGATTAACTCCTCCGTACTCAACGACGAGTTCATCGGCCCAACCACGACCCTTTCATCCGAGCCATCAGACTCCGTAGTTCCTGCACCCGCCACAAAGGGCAACCATAAACTCACTGATGCCATTCTCCCTGAGTCGAAAAACTGGAAAGAAGAAGGCATAGTGACCCCGGTTAAAGATCAAGGTCACCGTGGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCAGCGTATGTGCAGACATTTGGAAAGCAAATCTCCCTCTCCGAGCAGCAGCTTGTGGATTGTGCTGGAGATTTCAACAACAACGGCTGCAATGGTGGGCTGCCATCTCAAGCATTTGAGTACATTAAGTATAACGGGGGTCTTGACACTGAGGCTGCGTATCCCTACGTTGGAGTAGACGGTGCTTGCAAATTTTCGTCGGAAAATGTTGGCGTCCATGTCGTCGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCCGTTGCATTTGTGCGACCGGTCAGCGTGGCGTTTCAGGTCGTCCAAAGTTTTCGGTTCTACAAGTCGGGAGTTTACACCAGTGACACATGCGGCAGCAGTTCCATGGATGTGAACCATGCAGTTCTTGCAGTTGGGTACGGAGTGGAAGACGGCGTCCTGTTCTGGCTCGTCAAGAACTCTTGGGGACAAAGCTGGGGGGGACGTCGGGTACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

295

Amino Acids

32.0

Weight (kDa)

4.97

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_L PF01193 23 - 99 1.3e-10 RNA polymerase Rpb3/Rpb11 dimerisation domain
Peptidase_C1 PF00112 98 - 289 1.4e-66 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 874
Acc65I GGTACC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 877
AccI GTMKAC 2 cut(s) 573, 621
AccII CGCG 4 cut(s) 31, 33, 81, 117
AciI CCGC 5 cut(s) 29, 79, 115, 255, 759
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 4 cut(s) 90, 609, 822, 871
AfaI GTAC 5 cut(s) 17, 183, 518, 806, 879
AfiI CCNNNNNNNGG 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 685
AgsI TTSAA 2 cut(s) 472, 661
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 4 cut(s) 76, 389, 448, 861
AluI AGCT 4 cut(s) 76, 389, 448, 861
Alw21I GWGCWC 2 cut(s) 78, 391
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 7 cut(s) 398, 442, 445, 483, 496, 551, 762
ApoI RAATTY 1 cut(s) 587
AsiGI ACCGGT 1 cut(s) 685
Asp718I GGTACC 1 cut(s) 877
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 133, 203
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 142, 344, 628
AsuII TTCGAA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 877
BanII GRGCYC 2 cut(s) 78, 391
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 2 cut(s) 78, 391
BbvI GCAGC 7 cut(s) 410, 454, 457, 470, 483, 538, 774
BccI CCATC 3 cut(s) 155, 238, 508
BceAI ACGGC 3 cut(s) 496, 653, 835
BciT130I CCWGG 1 cut(s) 641
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 1 cut(s) 335
BfuI GTATCC 1 cut(s) 567
BisI GCNGC 9 cut(s) 115, 399, 443, 446, 484, 497, 552, 760, 763
BlsI GCNGC 9 cut(s) 116, 400, 444, 447, 485, 498, 553, 761, 764
Bme1390I CCNGG 2 cut(s) 335, 641
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 133, 203
BmiI GGNNCC 3 cut(s) 26, 135, 879
BmrFI CCNGG 2 cut(s) 335, 641
BmsI GCATC 2 cut(s) 105, 274
BpiI GAAGAC 1 cut(s) 822
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 2 cut(s) 405, 483
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 64
BsaHI GRCGYC 4 cut(s) 90, 609, 822, 871
BsaJI CCNNGG 6 cut(s) 129, 333, 355, 639, 640, 771
BsaWI WCCGGW 1 cut(s) 685
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 685
Bse1I ACTGG 3 cut(s) 314, 388, 747
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 6 cut(s) 129, 333, 355, 639, 640, 771
BseGI GGATG 2 cut(s) 221, 781
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 288, 537
BseNI ACTGG 3 cut(s) 314, 388, 747
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 7 cut(s) 410, 454, 457, 470, 483, 538, 774
BseYI CCCAGC 1 cut(s) 861
BsgI GTGCAG 2 cut(s) 234, 428
Bsh1236I CGCG 4 cut(s) 31, 33, 81, 117
Bsh1285I CGRYCG 1 cut(s) 686
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 877
BshTI ACCGGT 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 78, 391
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 335, 686
BslFI GGGAC 2 cut(s) 119, 867
BslI CCNNNNNNNGG 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 119, 867
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 78, 391
Bsp143I GATC 3 cut(s) 162, 343, 359
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 5 cut(s) 29, 79, 115, 255, 759
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 289, 538
BspFNI CGCG 4 cut(s) 31, 33, 81, 117
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 26, 135, 879
BspPI GGATC 1 cut(s) 367
BspT104I TTCGAA 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 685
BsrI ACTGG 3 cut(s) 314, 388, 747
BssAI RCCGGY 1 cut(s) 685
BssECI CCNNGG 6 cut(s) 129, 333, 355, 639, 640, 771
BssMI GATC 3 cut(s) 162, 343, 359
BssNI GRCGYC 4 cut(s) 90, 609, 822, 871
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 4 cut(s) 142, 356, 578, 882
BstACI GRCGYC 4 cut(s) 90, 609, 822, 871
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 94, 583, 666
BstDEI CTNAG 2 cut(s) 297, 546
BstDSI CCRYGG 2 cut(s) 355, 771
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 221, 781
BstFNI CGCG 4 cut(s) 31, 33, 81, 117
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 165, 346, 362
BstMBI GATC 3 cut(s) 162, 343, 359
BstMCI CGRYCG 1 cut(s) 686
BstMWI GCNNNNNNNGC 3 cut(s) 98, 395, 794
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 668, 759
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 333, 639
BstUI CGCG 4 cut(s) 31, 33, 81, 117
BstV1I GCAGC 7 cut(s) 410, 454, 457, 470, 483, 538, 774
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 2 cut(s) 355, 771
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 221, 781
BtsIMutI CAGTG 5 cut(s) 84, 279, 381, 543, 754
Cac8I GCNNGC 3 cut(s) 94, 583, 666
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 133, 203
CseI GACGC 5 cut(s) 22, 98, 106, 598, 811
Csp6I GTAC 5 cut(s) 16, 182, 517, 805, 878
CspAI ACCGGT 1 cut(s) 685
CviAII CATG 6 cut(s) 121, 614, 665, 756, 772, 785
CviQI GTAC 5 cut(s) 16, 182, 517, 805, 878
DdeI CTNAG 2 cut(s) 297, 546
DpnI GATC 3 cut(s) 164, 345, 361
DpnII GATC 3 cut(s) 162, 343, 359
Ecl136II GAGCTC 2 cut(s) 76, 389
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 2 cut(s) 78, 391
Eco47I GGWCC 1 cut(s) 133
Eco53kI GAGCTC 2 cut(s) 76, 389
Eco57I CTGAAG 1 cut(s) 669
Eco88I CYCGRG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 2 cut(s) 76, 389
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 78, 391
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 6 cut(s) 124, 617, 668, 759, 775, 788
FaqI GGGAC 2 cut(s) 119, 867
FatI CATG 6 cut(s) 120, 613, 664, 755, 771, 784
FauI CCCGC 2 cut(s) 36, 262
FblI GTMKAC 2 cut(s) 573, 621
Fnu4HI GCNGC 9 cut(s) 115, 399, 443, 446, 484, 497, 552, 760, 763
FokI GGATG 2 cut(s) 208, 788
FriOI GRGCYC 2 cut(s) 78, 391
Fsp4HI GCNGC 9 cut(s) 115, 399, 443, 446, 484, 497, 552, 760, 763
GlaI GCGC 1 cut(s) 32
GluI GCNGC 9 cut(s) 115, 399, 443, 446, 484, 497, 552, 760, 763
GsaI CCCAGC 1 cut(s) 865
GsuI CTGGAG 2 cut(s) 405, 483
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 335, 686
HgaI GACGC 5 cut(s) 22, 98, 106, 598, 811
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 4 cut(s) 90, 609, 822, 871
Hin1II CATG 6 cut(s) 124, 617, 668, 759, 775, 788
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 3 cut(s) 236, 299, 623
HpaII CCGG 2 cut(s) 335, 686
HphI GGTGA 3 cut(s) 142, 344, 628
Hpy166II GTNNAC 4 cut(s) 574, 622, 742, 781
Hpy188I TCNGA 4 cut(s) 226, 235, 439, 598
Hpy188III TCNNGA 7 cut(s) 121, 160, 166, 392, 539, 735, 841
Hpy8I GTNNAC 4 cut(s) 574, 622, 742, 781
Hpy99I CGWCG 6 cut(s) 146, 161, 194, 598, 623, 876
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 4 cut(s) 142, 356, 578, 882
HpyCH4IV ACGT 3 cut(s) 63, 564, 871
HpyCH4V TGCA 7 cut(s) 251, 409, 486, 585, 674, 788, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 395, 794
HpyF3I CTNAG 2 cut(s) 297, 546
HpySE526I ACGT 3 cut(s) 63, 564, 871
Hsp92I GRCGYC 4 cut(s) 90, 609, 822, 871
Hsp92II CATG 6 cut(s) 124, 617, 668, 759, 775, 788
HspAI GCGC 1 cut(s) 31
KpnI GGTACC 1 cut(s) 881
Kzo9I GATC 3 cut(s) 162, 343, 359
LmnI GCTCC 3 cut(s) 30, 81, 386
Lsp1109I GCAGC 7 cut(s) 410, 454, 457, 470, 483, 538, 774
LweI GCATC 2 cut(s) 105, 274
MaeII ACGT 3 cut(s) 63, 564, 871
MaeIII GTNAC 4 cut(s) 53, 328, 350, 749
MalI GATC 3 cut(s) 164, 345, 361
MboI GATC 3 cut(s) 162, 343, 359
MboII GAAGA 5 cut(s) 34, 329, 662, 665, 827
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 78, 391
MluCI AATT 2 cut(s) 587, 656
MlyI GAGTC 3 cut(s) 230, 308, 617
MmeI TCCRAC 2 cut(s) 547, 576
MnlI CCTC 6 cut(s) 124, 164, 187, 388, 443, 541
MseI TTAA 3 cut(s) 171, 339, 522
MslI CAYNNNNRTG 1 cut(s) 776
MspI CCGG 2 cut(s) 335, 686
MspR9I CCNGG 2 cut(s) 335, 641
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 4 cut(s) 31, 33, 81, 117
MwoI GCNNNNNNNGC 3 cut(s) 98, 395, 794
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 771
NdeII GATC 3 cut(s) 162, 343, 359
NlaIII CATG 6 cut(s) 124, 617, 668, 759, 775, 788
NlaIV GGNNCC 3 cut(s) 26, 135, 879
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 4 cut(s) 53, 328, 350, 749
NspI RCATGY 2 cut(s) 668, 759
NspV TTCGAA 1 cut(s) 45
PaeI GCATGC 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 392
PagI TCATGA 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PflFI GACNNNGTC 2 cut(s) 626, 821
PinAI ACCGGT 1 cut(s) 685
PkrI GCNGC 9 cut(s) 116, 400, 444, 447, 485, 498, 553, 761, 764
PleI GAGTC 3 cut(s) 230, 307, 617
PpsI GAGTC 3 cut(s) 230, 307, 617
Ppu21I YACGTR 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 133
Psp124BI GAGCTC 2 cut(s) 78, 391
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 639
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 861
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 26, 135, 879
PspPI GGNCC 2 cut(s) 133, 203
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 1 cut(s) 359
PsyI GACNNNGTC 2 cut(s) 626, 821
RsaI GTAC 5 cut(s) 17, 183, 518, 806, 879
RsaNI GTAC 5 cut(s) 16, 182, 517, 805, 878
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 2 cut(s) 78, 391
SalI GTCGAC 1 cut(s) 620
SaqAI TTAA 3 cut(s) 171, 339, 522
SatI GCNGC 9 cut(s) 115, 399, 443, 446, 484, 497, 552, 760, 763
Sau3AI GATC 3 cut(s) 162, 343, 359
Sau96I GGNCC 2 cut(s) 133, 203
SchI GAGTC 3 cut(s) 230, 308, 617
ScrFI CCNGG 2 cut(s) 335, 641
SduI GDGCHC 2 cut(s) 78, 391
SfaNI GCATC 2 cut(s) 105, 274
Sfr274I CTCGAG 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 392, 504
SmoI CTYRAG 2 cut(s) 392, 504
SphI GCATGC 1 cut(s) 668
Sse9I AATT 2 cut(s) 587, 656
SsiI CCGC 5 cut(s) 29, 79, 115, 255, 759
SstI GAGCTC 2 cut(s) 78, 391
StyD4I CCNGG 2 cut(s) 333, 639
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 4 cut(s) 142, 356, 578, 882
TaiI ACGT 3 cut(s) 66, 567, 874
TaqI TCGA 6 cut(s) 45, 159, 165, 302, 393, 621
TasI AATT 2 cut(s) 587, 656
TatI WGTACW 1 cut(s) 516
TauI GCSGC 2 cut(s) 117, 762
Tru1I TTAA 3 cut(s) 171, 339, 522
Tru9I TTAA 3 cut(s) 171, 339, 522
TscAI CASTG 5 cut(s) 91, 286, 388, 550, 754
TseFI GTSAC 4 cut(s) 53, 328, 350, 749
TseI GCWGC 7 cut(s) 398, 442, 445, 483, 496, 551, 762
Tsp45I GTSAC 4 cut(s) 53, 328, 350, 749
TspDTI ATGAA 2 cut(s) 187, 210
TspGWI ACGGA 3 cut(s) 169, 229, 822
TspRI CASTG 5 cut(s) 91, 286, 388, 550, 754
Tth111I GACNNNGTC 2 cut(s) 626, 821
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 587
XceI RCATGY 2 cut(s) 668, 759
XhoI CTCGAG 1 cut(s) 392
XmiI GTMKAC 2 cut(s) 573, 621
ZraI GACGTC 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.