FvH4_1g08760

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011119
Physical Location & Seq
Reverse (-)
4658029 .. 4660506
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08760.t1

Sequence Viewer

Length: 1077 bp
ATGGCTTCTCCTCGTTTGACGCTGCTTCTGTCTGTCTTGGCCGCCGTCGTTCTCATCAGCTCCGCCGCCTCCAGCTTCGATGAGTCCAACCCCATCCAGTTGGCCTCCGAAGGGCTCCGTGAGCTGCAGGACCAGTTCGTCCAAGTCCTGGGTCATGGTTGCCACGTCCATTCCTTCGCTCGCTTCGCTTTCAGGTACGAGAAGAAGTACGAGAGCTTGGAGGAGATGAGGCGGCGATTCGAGATTTTCGCCGAGAACAAGAAGCTGATTCGATCCACCAACAGGAAGGGCTTGTCTTACAAGCTCGGTGTCAACCGGTTTGCTGATTGGACTTGGGAAGAGTTCCAGAGGCATAGGTTGGGGGCTGCTCAGAACTGCTCTGCTACCACTAAGGGCAACCACAAGCTCACCGACGCTGTTCCACCTCTCTCGAAAAACTGGAGAGACGAAGGTATAGTCACCCCTGTTAAAGACCAAGGTCACTGTGGATCTTGCTGGACATTCAGTACCACTGGAGCTCTTGAGGCAGCTTATGCGCAAGCGTTTGGGAAGCAAATCTCTCTGTCTGAACAGCAGCTTGTGGATTGCGCTGGAGCTTTCAACAACTTTGGGTGCAGCGGTGGGTTGCCATCTCAAGCTTTTGAGTACGTCAAATACAATGGTGGTCTTGACACTGAGGAAGGGTATCCTTACACTGCAAAAGATGGTGCCTGCAAGTTTTCTTCTGAAAATGTTGGTGTCCAAGTGCTCGATTCTGTCAACATTACCCTGGGTGATGAGGAAGGATTGAAGCACGCAGTTGCATTTGTTAGGCCAGTCAGCATAGCATTCCAGGTGGTCAGTGATTTCCGATTGTACAAGTCCGGTGTTTACACCAGTGAGACATGCGGCAACACTCCCATGGATGTGAACCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAAACGGTGTCCCATACTGGCTCATCAAGAACTCTTGGGGACAAAGCTGGGGTGACAATGGCTACTTCAAAATGGAGTATGGAAAGAACATGTGTGGTATTGCAACTTGTGCTTCTTACCCGGTTGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.42

Weight (kDa)

6.26

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 59 - 115 3.2e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 142 - 356 3e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
Acc16I TGCGCA 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 707
AccB7I CCANNNNNTGG 1 cut(s) 148
AciI CCGC 6 cut(s) 42, 63, 66, 232, 618, 888
AclWI GGATC 2 cut(s) 267, 496
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 5 cut(s) 197, 209, 508, 647, 857
AfiI CCNNNNNNNGG 3 cut(s) 111, 148, 282
AflIII ACRYGT 1 cut(s) 1032
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 4 cut(s) 601, 790, 944, 1012
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 147, 768, 831
Alw21I GWGCWC 2 cut(s) 520, 750
Alw26I GTCTC 2 cut(s) 438, 875
AlwI GGATC 2 cut(s) 267, 496
AoxI GGCC 3 cut(s) 39, 102, 812
ApeKI GCWGC 6 cut(s) 22, 124, 365, 527, 574, 615
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AsiGI ACCGGT 1 cut(s) 315
AspLEI GCGC 2 cut(s) 538, 590
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 4 cut(s) 400, 451, 785, 1007
AvaII GGWCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 707
BanII GRGCYC 2 cut(s) 117, 520
Bbv12I GWGCWC 2 cut(s) 520, 750
BbvI GCAGC 6 cut(s) 9, 111, 352, 539, 586, 627
BccI CCATC 3 cut(s) 101, 637, 698
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 3 cut(s) 149, 770, 833
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 2 cut(s) 438, 875
BfmI CTRYAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 696
Bme1390I CCNGG 4 cut(s) 149, 770, 833, 1064
Bme18I GGWCC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 116, 709
BmrFI CCNGG 4 cut(s) 149, 770, 833, 1064
BoxI GACNNNNGTC 1 cut(s) 477
BpmI CTGGAG 4 cut(s) 55, 460, 534, 612
BpuEI CTTGAG 2 cut(s) 542, 618
BpuMI CCSGG 1 cut(s) 1064
BsaJI CCNNGG 5 cut(s) 148, 475, 768, 769, 900
BsaWI WCCGGW 2 cut(s) 315, 863
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 148, 282
Bse118I RCCGGY 1 cut(s) 315
Bse1I ACTGG 7 cut(s) 97, 133, 443, 517, 815, 876, 965
BseBI CCWGG 3 cut(s) 149, 770, 833
BseDI CCNNGG 5 cut(s) 148, 475, 768, 769, 900
BseGI GGATG 2 cut(s) 93, 910
BseLI CCNNNNNNNGG 3 cut(s) 111, 148, 282
BseMII CTCAG 2 cut(s) 383, 666
BseNI ACTGG 7 cut(s) 97, 133, 443, 517, 815, 876, 965
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 6 cut(s) 9, 111, 352, 539, 586, 627
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 634
BshFI GGCC 3 cut(s) 41, 104, 814
BshNI GGYRCC 1 cut(s) 707
BshTI ACCGGT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 520, 750
BsiSI CCGG 3 cut(s) 316, 864, 1064
BslFI GGGAC 2 cut(s) 938, 996
BslI CCNNNNNNNGG 3 cut(s) 111, 148, 282
BsmAI GTCTC 2 cut(s) 438, 875
BsmBI CGTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 938, 996
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 3 cut(s) 41, 104, 814
Bsp1286I GDGCHC 3 cut(s) 117, 520, 750
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 2 cut(s) 272, 488
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 6 cut(s) 42, 63, 66, 232, 618, 888
BspANI GGCC 3 cut(s) 41, 104, 814
BspCNI CTCAG 2 cut(s) 382, 667
BspLI GGNNCC 2 cut(s) 116, 709
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 2 cut(s) 267, 496
BspT107I GGYRCC 1 cut(s) 707
BsrFI RCCGGY 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 7 cut(s) 97, 133, 443, 517, 815, 876, 965
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 5 cut(s) 148, 475, 768, 769, 900
BssMI GATC 2 cut(s) 272, 488
BssT1I CCWWGG 2 cut(s) 475, 900
Bst2UI CCWGG 3 cut(s) 149, 770, 833
Bst4CI ACNGT 2 cut(s) 485, 950
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 533, 1052
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 4 cut(s) 181, 540, 712, 795
BstDEI CTNAG 3 cut(s) 369, 390, 675
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 2 cut(s) 93, 910
BstHHI GCGC 2 cut(s) 538, 590
BstKTI GATC 2 cut(s) 275, 491
BstMAI GTCTC 2 cut(s) 438, 875
BstMBI GATC 2 cut(s) 272, 488
BstMWI GCNNNNNNNGC 6 cut(s) 121, 185, 524, 533, 923, 1052
BstNI CCWGG 3 cut(s) 149, 770, 833
BstNSI RCATGY 2 cut(s) 888, 1036
BstPAI GACNNNNGTC 1 cut(s) 477
BstSCI CCNGG 4 cut(s) 147, 768, 831, 1062
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 6 cut(s) 9, 111, 352, 539, 586, 627
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 488
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 41, 104, 814
BtgI CCRYGG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 93, 910
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 6 cut(s) 481, 510, 672, 693, 847, 883
Cac8I GCNNGC 4 cut(s) 181, 540, 712, 795
CfoI GCGC 2 cut(s) 538, 590
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 2 cut(s) 28, 422
Csp6I GTAC 5 cut(s) 196, 208, 507, 646, 856
CspAI ACCGGT 1 cut(s) 315
CviAII CATG 5 cut(s) 155, 885, 901, 914, 1033
CviQI GTAC 5 cut(s) 196, 208, 507, 646, 856
DdeI CTNAG 3 cut(s) 369, 390, 675
DpnI GATC 2 cut(s) 274, 490
DpnII GATC 2 cut(s) 272, 488
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 475, 900
Eco24I GRGCYC 2 cut(s) 117, 520
Eco47I GGWCC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 147, 768, 831
EcoT14I CCWWGG 2 cut(s) 475, 900
EcoT38I GRGCYC 2 cut(s) 117, 520
ErhI CCWWGG 2 cut(s) 475, 900
Esp3I CGTCTC 1 cut(s) 438
FaeI CATG 5 cut(s) 158, 888, 904, 917, 1036
FaqI GGGAC 2 cut(s) 938, 996
FatI CATG 5 cut(s) 154, 884, 900, 913, 1032
FokI GGATG 2 cut(s) 80, 917
FriOI GRGCYC 2 cut(s) 117, 520
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 2 cut(s) 537, 589
GsaI CCCAGC 1 cut(s) 994
GsuI CTGGAG 4 cut(s) 55, 460, 534, 612
HaeIII GGCC 3 cut(s) 41, 104, 814
HapII CCGG 3 cut(s) 316, 864, 1064
HgaI GACGC 2 cut(s) 28, 422
HhaI GCGC 2 cut(s) 538, 590
Hin1II CATG 5 cut(s) 158, 888, 904, 917, 1036
Hin6I GCGC 2 cut(s) 536, 588
HinP1I GCGC 2 cut(s) 536, 588
HincII GTYRAC 2 cut(s) 313, 760
HindII GTYRAC 2 cut(s) 313, 760
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 4 cut(s) 83, 237, 268, 752
HpaII CCGG 3 cut(s) 316, 864, 1064
HphI GGTGA 4 cut(s) 400, 451, 785, 1007
Hpy166II GTNNAC 4 cut(s) 313, 760, 871, 910
Hpy188I TCNGA 5 cut(s) 109, 372, 568, 727, 851
Hpy188III TCNNGA 6 cut(s) 241, 346, 430, 521, 668, 970
Hpy8I GTNNAC 4 cut(s) 313, 760, 871, 910
Hpy99I CGWCG 2 cut(s) 50, 416
HpyAV CCTTC 6 cut(s) 104, 184, 280, 443, 674, 776
HpyCH4III ACNGT 2 cut(s) 485, 950
HpyCH4IV ACGT 2 cut(s) 165, 648
HpyCH4V TGCA 6 cut(s) 127, 615, 698, 714, 803, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 121, 185, 524, 533, 923, 1052
HpyF3I CTNAG 3 cut(s) 369, 390, 675
HpySE526I ACGT 2 cut(s) 165, 648
Hsp92II CATG 5 cut(s) 158, 888, 904, 917, 1036
HspAI GCGC 2 cut(s) 536, 588
Kzo9I GATC 2 cut(s) 272, 488
LmnI GCTCC 4 cut(s) 65, 120, 515, 593
Lsp1109I GCAGC 6 cut(s) 9, 111, 352, 539, 586, 627
MaeII ACGT 2 cut(s) 165, 648
MaeIII GTNAC 3 cut(s) 457, 479, 995
MalI GATC 2 cut(s) 274, 490
MboI GATC 2 cut(s) 272, 488
MboII GAAGA 3 cut(s) 214, 350, 714
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 3 cut(s) 117, 520, 750
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 111
MseI TTAA 2 cut(s) 468, 1075
MslI CAYNNNNRTG 2 cut(s) 899, 905
MspA1I CMGCKG 1 cut(s) 618
MspI CCGG 3 cut(s) 316, 864, 1064
MspR9I CCNGG 4 cut(s) 149, 770, 833, 1064
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 3 cut(s) 149, 770, 833
MwoI GCNNNNNNNGC 6 cut(s) 121, 185, 524, 533, 923, 1052
NciI CCSGG 1 cut(s) 1064
NcoI CCATGG 1 cut(s) 900
NdeII GATC 2 cut(s) 272, 488
NlaIII CATG 5 cut(s) 158, 888, 904, 917, 1036
NlaIV GGNNCC 2 cut(s) 116, 709
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 3 cut(s) 457, 479, 995
NsbI TGCGCA 1 cut(s) 537
NspI RCATGY 2 cut(s) 888, 1036
PasI CCCWGGG 1 cut(s) 769
PciI ACATGT 1 cut(s) 1032
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 3 cut(s) 237, 268, 752
PflMI CCANNNNNTGG 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 315
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 1032
PshAI GACNNNNGTC 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 3 cut(s) 147, 768, 831
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 3 cut(s) 147, 768, 831
PspN4I GGNNCC 2 cut(s) 116, 709
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 5 cut(s) 197, 209, 508, 647, 857
RsaNI GTAC 5 cut(s) 196, 208, 507, 646, 856
RseI CAYNNNNRTG 2 cut(s) 899, 905
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 2 cut(s) 468, 1075
Sau3AI GATC 2 cut(s) 272, 488
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 149, 770, 833, 1064
SduI GDGCHC 3 cut(s) 117, 520, 750
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 2 cut(s) 899, 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SsiI CCGC 6 cut(s) 42, 63, 66, 232, 618, 888
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 4 cut(s) 147, 768, 831, 1062
StyI CCWWGG 2 cut(s) 475, 900
TaaI ACNGT 2 cut(s) 485, 950
TaiI ACGT 2 cut(s) 168, 651
TaqI TCGA 5 cut(s) 78, 240, 271, 431, 750
TatI WGTACW 1 cut(s) 855
TauI GCSGC 4 cut(s) 44, 68, 235, 891
TfiI GAWTC 3 cut(s) 237, 268, 752
Tru1I TTAA 2 cut(s) 468, 1075
Tru9I TTAA 2 cut(s) 468, 1075
TscAI CASTG 6 cut(s) 488, 517, 679, 700, 847, 883
TseFI GTSAC 3 cut(s) 457, 479, 995
TseI GCWGC 6 cut(s) 22, 124, 365, 527, 574, 615
Tsp45I GTSAC 3 cut(s) 457, 479, 995
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 6 cut(s) 488, 517, 679, 700, 847, 883
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 2 cut(s) 888, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.