pycom15g19350

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011119
Physical Location & Seq
Reverse (-)
13758091 .. 13761485
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19350.4

Sequence Viewer

Length: 1281 bp
ATGAATACATTCAGTTCATACAGTGTTAGGGATAACAAGAGGTACGTAAGCGTTACAGCAACGTGGCAACTGCTGGTTGGTTACGGTTGTTTAATAAGAAGCCCAATCAGTGGATTCCAGAGCACTGGAGTGGCCTCCCCCTTCACCATCTATTCAATCAGCAGAATCTCCGTCGATCTTCTCCTCCGACACATCACCAAAAACATGGCTCGGCTGACGCTATTCTTGTCCGCCACCTTGGTCCTGGCGGCGATCAGCTGCGTCGCGGCAGCATCGAGCTTCGATGAGTCCAACCCAATCCGATTGGTGTCCGACTCCCTCCGTGACATGGAGGAGCAAGTCGTCCAAGTCCTCGGCAGCTGCCGCCACGTCCTCTCCTTCGCCCGCTTCGCTCACAGGTACGGGAAGAAGTACGAGAGCGCGGAGGAGATGAAGCTGCGGTATGCGATTTTCTCGGAGAATAAGAAGCTGATTCGATCTACGAATAAGAAGGGCTTGCCTTACACTCTTGCTCTCAATCGGTTTGCTGATTGGAGCTGGGAAGAGTTCACAAGGCACAGGTTGGGAGCTGCTCAGAACTGCTCTGCCACCACAAAGGGCAACCACAAGCTCACTGATGCCGTTCTTCCTGAATCGAAAAACTGGAAAGAAGAAGGCATAGTGACTCCAGTTAAAGATCAAGGTCACTGTCGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCTGCGTATGTGCAGGCATTCGGAAAGCAAATCTCCCTATCGGAGCAGCAGCTTGTGGATTGCGCTGGCGCTTTCAACAATAACGGCTGCAGTGGTGGGTTACCATCTCAAGCATTTGAGTACATCAAGTACAATGGCGGTCTTGACACCGAGGCTGCTTATCCGTATGTTGGAGTCGACGGTGTTTGCAAATACTCGGCAGAAAATATTGGTGTCCAAGTCGTTGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCTGTTGCATTTGTGCGGCCAGTCAGTGTGGCGTTTCAGGTCATCAATGGTTTCCGATTTTACAAGTCGGGAGTTTACACCAGTGACACATGCGGTACTGGCCCCATGGATGTGAACCATGCAGTTCTTGCAGTTGGGTACGGAGTTGAAGGCGGCGTCCCGTACTGGCTCATCAAGAACTCTTGGGGAGAAAGCTGGGGCGACAATGGCTACTTCAAGATGGAGTATGGGAAGAACATGTGTGGTGTTGCAACATGTGCATCGTACCCGGTTGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

427

Amino Acids

46.77

Weight (kDa)

8.16

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 906
AccII CGCG 3 cut(s) 266, 422, 1277
AcoI YGGCCR 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 1155
AfaI GTAC 9 cut(s) 44, 401, 413, 851, 860, 1096, 1139, 1163, 1265
AfiI CCNNNNNNNGG 3 cut(s) 110, 328, 899
AflIII ACRYGT 2 cut(s) 1236, 1253
AgsI TTSAA 5 cut(s) 156, 805, 994, 1148, 1216
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 243, 972
AleI CACNNNNGTG 1 cut(s) 128
Alw21I GWGCWC 2 cut(s) 125, 724
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 3 cut(s) 132, 1016, 1099
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 422, 794, 800
AspS9I GGNCC 2 cut(s) 241, 1100
AsuC2I CCSGG 1 cut(s) 1268
AsuHPI GGTGA 3 cut(s) 136, 187, 961
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 724
Bbv12I GWGCWC 2 cut(s) 125, 724
BccI CCATC 3 cut(s) 155, 841, 1213
BceAI ACGGC 2 cut(s) 605, 829
BciT130I CCWGG 2 cut(s) 245, 974
BcnI CCSGG 1 cut(s) 1268
BfmI CTRYAG 1 cut(s) 817
BfoI RGCGCY 1 cut(s) 801
Bme1390I CCNGG 3 cut(s) 245, 974, 1268
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 725
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 241, 1100
BmiI GGNNCC 1 cut(s) 1102
BmrFI CCNGG 3 cut(s) 245, 974, 1268
BmsI GCATC 3 cut(s) 281, 607, 1268
BpmI CTGGAG 3 cut(s) 147, 651, 738
BpuEI CTTGAG 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 1268
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 1155
BsaJI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 328, 899
Bse1I ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BseBI CCWGG 2 cut(s) 245, 974
BseDI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BseGI GGATG 1 cut(s) 1114
BseLI CCNNNNNNNGG 3 cut(s) 110, 328, 899
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BseRI GAGGAG 3 cut(s) 173, 347, 440
BseYI CCCAGC 2 cut(s) 537, 1194
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 3 cut(s) 266, 422, 1277
BshFI GGCC 3 cut(s) 134, 1018, 1101
BsiHKAI GWGCWC 2 cut(s) 125, 724
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 1 cut(s) 1268
BslFI GGGAC 1 cut(s) 1142
BslI CCNNNNNNNGG 3 cut(s) 110, 328, 899
BsmFI GGGAC 1 cut(s) 1142
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 3 cut(s) 134, 1018, 1101
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 125, 724
Bsp143I GATC 5 cut(s) 175, 252, 476, 676, 692
Bsp19I CCATGG 1 cut(s) 1104
BspANI GGCC 3 cut(s) 134, 1018, 1101
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 3 cut(s) 266, 422, 1277
BspLI GGNNCC 1 cut(s) 1102
BspMAI CTGCAG 1 cut(s) 821
BsrI ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BssECI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BssMI GATC 5 cut(s) 175, 252, 476, 676, 692
BssNI GRCGYC 1 cut(s) 1155
BssT1I CCWWGG 2 cut(s) 237, 1104
Bst2UI CCWGG 2 cut(s) 245, 974
Bst4CI ACNGT 4 cut(s) 23, 86, 689, 911
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 1155
BstAPI GCANNNNNTGC 2 cut(s) 1127, 1256
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 5 cut(s) 385, 497, 744, 796, 999
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 1104
BstEII GGTNACC 1 cut(s) 828
BstF5I GGATG 1 cut(s) 1114
BstFNI CGCG 3 cut(s) 266, 422, 1277
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 3 cut(s) 422, 794, 800
BstKTI GATC 5 cut(s) 178, 255, 479, 679, 695
BstMBI GATC 5 cut(s) 175, 252, 476, 676, 692
BstMWI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
BstNI CCWGG 2 cut(s) 245, 974
BstNSI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
BstPI GGTNACC 1 cut(s) 828
BstSCI CCNGG 3 cut(s) 243, 972, 1266
BstSFI CTRYAG 1 cut(s) 817
BstSNI TACGTA 1 cut(s) 46
BstUI CGCG 3 cut(s) 266, 422, 1277
BstXI CCANNNNNNTGG 2 cut(s) 125, 205
BsuRI GGCC 3 cut(s) 134, 1018, 1101
BtgI CCRYGG 1 cut(s) 1104
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 1114
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 9 cut(s) 28, 115, 123, 612, 685, 714, 826, 1030, 1087
Cac8I GCNNGC 5 cut(s) 385, 497, 744, 796, 999
CfoI GCGC 3 cut(s) 422, 794, 800
Cfr13I GGNCC 2 cut(s) 241, 1100
CseI GACGC 3 cut(s) 226, 250, 1144
Csp6I GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
CviAII CATG 8 cut(s) 205, 328, 998, 1089, 1105, 1118, 1237, 1254
CviQI GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
DdeI CTNAG 1 cut(s) 573
DpnI GATC 5 cut(s) 177, 254, 478, 678, 694
DpnII GATC 5 cut(s) 175, 252, 476, 676, 692
EaeI YGGCCR 1 cut(s) 1016
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 722
Eco105I TACGTA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 237, 1104
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 725
Eco91I GGTNACC 1 cut(s) 828
EcoICRI GAGCTC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 243, 972
EcoT14I CCWWGG 2 cut(s) 237, 1104
EcoT38I GRGCYC 1 cut(s) 724
ErhI CCWWGG 2 cut(s) 237, 1104
FaeI CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 1142
FatI CATG 8 cut(s) 204, 327, 997, 1088, 1104, 1117, 1236, 1253
FauI CCCGC 1 cut(s) 392
FblI GTMKAC 1 cut(s) 906
FokI GGATG 1 cut(s) 1121
FriOI GRGCYC 1 cut(s) 724
GlaI GCGC 3 cut(s) 421, 793, 799
GsaI CCCAGC 2 cut(s) 541, 1198
GsuI CTGGAG 3 cut(s) 147, 651, 738
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 3 cut(s) 134, 1018, 1101
HapII CCGG 1 cut(s) 1268
HgaI GACGC 3 cut(s) 226, 250, 1144
HhaI GCGC 3 cut(s) 422, 794, 800
Hin1I GRCGYC 1 cut(s) 1155
Hin1II CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
Hin6I GCGC 3 cut(s) 420, 792, 798
HinP1I GCGC 3 cut(s) 420, 792, 798
HincII GTYRAC 2 cut(s) 907, 955
HindII GTYRAC 2 cut(s) 907, 955
HinfI GANTC 9 cut(s) 114, 165, 287, 314, 472, 632, 664, 903, 956
HpaII CCGG 1 cut(s) 1268
HphI GGTGA 3 cut(s) 136, 187, 961
Hpy166II GTNNAC 5 cut(s) 549, 907, 955, 1075, 1114
Hpy188I TCNGA 8 cut(s) 188, 302, 313, 457, 576, 752, 772, 1055
Hpy188III TCNNGA 7 cut(s) 118, 629, 725, 872, 1068, 1174, 1216
Hpy8I GTNNAC 5 cut(s) 549, 907, 955, 1075, 1114
Hpy99I CGWCG 3 cut(s) 176, 266, 911
HpyAV CCTTC 5 cut(s) 151, 388, 484, 647, 1142
HpyCH4III ACNGT 4 cut(s) 23, 86, 689, 911
HpyCH4IV ACGT 3 cut(s) 45, 62, 369
HpyCH4V TGCA 8 cut(s) 742, 819, 918, 1007, 1121, 1130, 1250, 1259
HpyF10VI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 3 cut(s) 45, 62, 369
Hsp92I GRCGYC 1 cut(s) 1155
Hsp92II CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
HspAI GCGC 3 cut(s) 420, 792, 798
Kzo9I GATC 5 cut(s) 175, 252, 476, 676, 692
LmnI GCTCC 5 cut(s) 334, 534, 566, 719, 772
LweI GCATC 3 cut(s) 281, 607, 1268
MaeII ACGT 3 cut(s) 45, 62, 369
MaeIII GTNAC 7 cut(s) 52, 80, 323, 661, 683, 828, 1082
MalI GATC 5 cut(s) 177, 254, 478, 678, 694
MboI GATC 5 cut(s) 175, 252, 476, 676, 692
MboII GAAGA 8 cut(s) 170, 418, 554, 617, 662, 995, 998, 1243
MhlI GDGCHC 2 cut(s) 125, 724
MluCI AATT 1 cut(s) 989
MlyI GAGTC 5 cut(s) 296, 308, 658, 912, 950
MmeI TCCRAC 4 cut(s) 211, 315, 336, 880
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 92, 672
MslI CAYNNNNRTG 2 cut(s) 128, 1109
MspA1I CMGCKG 2 cut(s) 258, 360
MspI CCGG 1 cut(s) 1268
MspR9I CCNGG 3 cut(s) 245, 974, 1268
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 245, 974
MvnI CGCG 3 cut(s) 266, 422, 1277
MwoI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
NciI CCSGG 1 cut(s) 1268
NcoI CCATGG 1 cut(s) 1104
NdeII GATC 5 cut(s) 175, 252, 476, 676, 692
NlaIII CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
NlaIV GGNNCC 1 cut(s) 1102
NmeAIII GCCGAG 3 cut(s) 190, 333, 905
NmuCI GTSAC 4 cut(s) 323, 661, 683, 1082
NspI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
OliI CACNNNNGTG 1 cut(s) 128
PaeI GCATGC 1 cut(s) 1001
PaeR7I CTCGAG 1 cut(s) 725
PasI CCCWGGG 1 cut(s) 973
PciI ACATGT 2 cut(s) 1236, 1253
PctI GAATGC 1 cut(s) 746
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 114, 165, 472, 632
PflFI GACNNNGTC 1 cut(s) 959
PflMI CCANNNNNTGG 1 cut(s) 110
PleI GAGTC 5 cut(s) 295, 308, 658, 911, 950
PpsI GAGTC 5 cut(s) 295, 308, 658, 911, 950
Ppu21I YACGTR 1 cut(s) 46
PscI ACATGT 2 cut(s) 1236, 1253
Psp124BI GAGCTC 1 cut(s) 724
Psp6I CCWGG 2 cut(s) 243, 972
PspEI GGTNACC 1 cut(s) 828
PspFI CCCAGC 2 cut(s) 537, 1194
PspGI CCWGG 2 cut(s) 243, 972
PspN4I GGNNCC 1 cut(s) 1102
PspPI GGNCC 2 cut(s) 241, 1100
PstI CTGCAG 1 cut(s) 821
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 2 cut(s) 258, 360
RsaI GTAC 9 cut(s) 44, 401, 413, 851, 860, 1096, 1139, 1163, 1265
RsaNI GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
RseI CAYNNNNRTG 2 cut(s) 128, 1109
SacI GAGCTC 1 cut(s) 724
SalI GTCGAC 1 cut(s) 905
SaqAI TTAA 2 cut(s) 92, 672
Sau3AI GATC 5 cut(s) 175, 252, 476, 676, 692
Sau96I GGNCC 2 cut(s) 241, 1100
SchI GAGTC 5 cut(s) 296, 308, 658, 912, 950
ScrFI CCNGG 3 cut(s) 245, 974, 1268
SduI GDGCHC 2 cut(s) 125, 724
SfaNI GCATC 3 cut(s) 281, 607, 1268
SfcI CTRYAG 1 cut(s) 817
Sfr274I CTCGAG 1 cut(s) 725
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 128, 1109
SmlI CTYRAG 2 cut(s) 725, 837
SmoI CTYRAG 2 cut(s) 725, 837
SnaBI TACGTA 1 cut(s) 46
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 1 cut(s) 989
SspI AATATT 1 cut(s) 937
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 3 cut(s) 243, 972, 1266
StyI CCWWGG 2 cut(s) 237, 1104
TaaI ACNGT 4 cut(s) 23, 86, 689, 911
TaiI ACGT 3 cut(s) 48, 65, 372
TaqI TCGA 8 cut(s) 174, 275, 282, 475, 635, 691, 726, 906
TasI AATT 1 cut(s) 989
TatI WGTACW 2 cut(s) 849, 858
TauI GCSGC 5 cut(s) 251, 269, 366, 1018, 1155
TfiI GAWTC 4 cut(s) 114, 165, 472, 632
Tru1I TTAA 2 cut(s) 92, 672
Tru9I TTAA 2 cut(s) 92, 672
TscAI CASTG 9 cut(s) 28, 115, 130, 619, 692, 721, 826, 1030, 1087
TseFI GTSAC 4 cut(s) 323, 661, 683, 1082
Tsp45I GTSAC 4 cut(s) 323, 661, 683, 1082
TspDTI ATGAA 3 cut(s) 6, 17, 446
TspGWI ACGGA 4 cut(s) 160, 311, 882, 1155
TspRI CASTG 9 cut(s) 28, 115, 130, 619, 692, 721, 826, 1030, 1087
Tth111I GACNNNGTC 1 cut(s) 959
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.