MD02G1091800.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011119
Physical Location & Seq
Reverse (-)
7274902 .. 7277590
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1091800.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGCGCGGCTGATGCTGTTCTTGTCCGCTGCCTTGGTCCTGGCGGCGATCAGCTGCGGGGTGGCAGCGTCGAGCTTCGATGAGTCCAACCCAATCCGGTTGGTGTCCGACTCTCTCCGTGACCTGGAGGAGCAAGTCGTCCAAGTCCTCGGCAGCTCCCGCCACGTCGTCTCGTTCGCCAGTTTCGCTCACAGGTACGGGAAGAAGTACGAGAGCGCGGAGGAGATGAAGCTGCGATATGAGATTTTCTTGGAGAATAAGAAGCTGATTCGATCCACCAACAGGAAGGGCTTGTCTTACACTCTTGCTGTTAATCGGTTTGCTGATTGGAGCTGGGAAGAGTTCGCGAGGCACAGGTTGGGAGCTGCTCAGAACTGCTCTGCCACCACAAAGGGCAACCACAAGCTCACTGATGCCGTTCTCCCTGAGTCGAAAAACTGGAAAGAAGAAGGCATAGTGACCCCGGTTAAAGATCAAGGTCACTGTGGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCAGCGTATGTGCAGGCATTTGGAAAGCAAATCTCCCTCTCCGAGCAGCAGCTTGTGGATTGTGCCGGAGATTTCAACAACAACGGCTGCAATGGTGGGCTGCCATCTCAAGCATTTGAGTACATTAAGTATAACGGGGGTCTTGACACTGAGGCTGCGTATCCCTACGTTGGAGTAGACGGTGCTTGCAAATTTTCGTCGGAAAATGTTGGCGTCCATGTCGTCGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCCGTTGCATTTGTGCGGCCGGTCAGCGTGGCGTTTCAGGTCGTCCAAAGTTTCCGGTTTTACAAGTCGGGAGTTTACACCAGTGACACATGCGGCAGCAGTTCCATGGATGTGAACCATGCAGTTCTTGCAGTTGGGTACGGAGTGGAAGACGGCGTCCCGTTCTGGCTCATCAAGAACTCTTGGGGACAAAGCTGGGGGGACAATGGCTACTTCAAGATGGAGTACGGGAAGAACATGTGTGGTGTTGCAACATGCGCATCGTACCCCGTTGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.11

Weight (kDa)

5.8

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 59 - 115 6.9e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 141 - 356 5.1e-79 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1054
AccI GTMKAC 2 cut(s) 702, 750
AccII CGCG 4 cut(s) 7, 218, 347, 1073
AciI CCGC 8 cut(s) 7, 27, 44, 57, 160, 218, 811, 888
AclWI GGATC 2 cut(s) 267, 496
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 798
AcyI GRCGYC 2 cut(s) 738, 951
AfaI GTAC 6 cut(s) 197, 209, 647, 935, 1022, 1061
AfiI CCNNNNNNNGG 3 cut(s) 124, 282, 695
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 3 cut(s) 601, 790, 1012
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 39, 123, 768
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 267, 496
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 812
ApoI RAATTY 1 cut(s) 716
AspLEI GCGC 3 cut(s) 7, 218, 1055
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 2 cut(s) 637, 1009
BceAI ACGGC 4 cut(s) 401, 625, 782, 964
BciT130I CCWGG 3 cut(s) 41, 125, 770
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 696
Bme1390I CCNGG 4 cut(s) 41, 125, 464, 770
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 37
BmrFI CCNGG 4 cut(s) 41, 125, 464, 770
BmsI GCATC 3 cut(s) 3, 403, 1064
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 2 cut(s) 146, 534
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 2 cut(s) 738, 951
BsaJI CCNNGG 6 cut(s) 33, 148, 462, 768, 769, 900
BsaWI WCCGGW 2 cut(s) 96, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 282, 695
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 4 cut(s) 180, 443, 517, 876
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 3 cut(s) 41, 125, 770
BseDI CCNNGG 6 cut(s) 33, 148, 462, 768, 769, 900
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 3 cut(s) 124, 282, 695
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 3 cut(s) 383, 417, 666
BseNI ACTGG 4 cut(s) 180, 443, 517, 876
BseRI GAGGAG 2 cut(s) 143, 236
BseX3I CGGCCG 1 cut(s) 812
BseYI CCCAGC 2 cut(s) 333, 990
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 4 cut(s) 7, 218, 347, 1073
Bsh1285I CGRYCG 1 cut(s) 815
BshFI GGCC 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 815
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 5 cut(s) 97, 464, 591, 815, 850
BslFI GGGAC 3 cut(s) 938, 996, 1010
BslI CCNNNNNNNGG 3 cut(s) 124, 282, 695
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 3 cut(s) 938, 996, 1010
BsnI GGCC 1 cut(s) 814
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 4 cut(s) 48, 272, 472, 488
Bsp19I CCATGG 1 cut(s) 900
Bsp68I TCGCGA 1 cut(s) 347
BspACI CCGC 8 cut(s) 7, 27, 44, 57, 160, 218, 811, 888
BspANI GGCC 1 cut(s) 814
BspCNI CTCAG 3 cut(s) 382, 418, 667
BspFNI CGCG 4 cut(s) 7, 218, 347, 1073
BspPI GGATC 2 cut(s) 267, 496
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 4 cut(s) 180, 443, 517, 876
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 6 cut(s) 33, 148, 462, 768, 769, 900
BssMI GATC 4 cut(s) 48, 272, 472, 488
BssNI GRCGYC 2 cut(s) 738, 951
BssT1I CCWWGG 2 cut(s) 33, 900
Bst2UI CCWGG 3 cut(s) 41, 125, 770
Bst4CI ACNGT 2 cut(s) 485, 707
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 738, 951
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 3 cut(s) 540, 712, 795
BstDEI CTNAG 3 cut(s) 369, 426, 675
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 4 cut(s) 7, 218, 347, 1073
BstHHI GCGC 3 cut(s) 7, 218, 1055
BstKTI GATC 4 cut(s) 51, 275, 475, 491
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 4 cut(s) 48, 272, 472, 488
BstMCI CGRYCG 1 cut(s) 815
BstMWI GCNNNNNNNGC 6 cut(s) 13, 159, 185, 524, 923, 1052
BstNI CCWGG 3 cut(s) 41, 125, 770
BstNSI RCATGY 4 cut(s) 797, 888, 1036, 1053
BstSCI CCNGG 4 cut(s) 39, 123, 462, 768
BstUI CGCG 4 cut(s) 7, 218, 347, 1073
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BstZI CGGCCG 1 cut(s) 812
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 1 cut(s) 814
BtgI CCRYGG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 5 cut(s) 408, 481, 510, 672, 883
BtuMI TCGCGA 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 540, 712, 795
CfoI GCGC 3 cut(s) 7, 218, 1055
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 3 cut(s) 57, 727, 940
Csp6I GTAC 6 cut(s) 196, 208, 646, 934, 1021, 1060
CviAII CATG 7 cut(s) 743, 794, 885, 901, 914, 1033, 1050
CviQI GTAC 6 cut(s) 196, 208, 646, 934, 1021, 1060
DdeI CTNAG 3 cut(s) 369, 426, 675
DpnI GATC 4 cut(s) 50, 274, 474, 490
DpnII GATC 4 cut(s) 48, 272, 472, 488
EaeI YGGCCR 1 cut(s) 812
EagI CGGCCG 1 cut(s) 812
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 518
EclXI CGGCCG 1 cut(s) 812
Eco130I CCWWGG 2 cut(s) 33, 900
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 37
Eco52I CGGCCG 1 cut(s) 812
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 39, 123, 768
EcoT14I CCWWGG 2 cut(s) 33, 900
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 33, 900
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 7 cut(s) 746, 797, 888, 904, 917, 1036, 1053
FaqI GGGAC 3 cut(s) 938, 996, 1010
FatI CATG 7 cut(s) 742, 793, 884, 900, 913, 1032, 1049
FauI CCCGC 2 cut(s) 50, 167
FblI GTMKAC 2 cut(s) 702, 750
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 1 cut(s) 520
FspAI RTGCGCAY 1 cut(s) 1054
FspI TGCGCA 1 cut(s) 1054
GlaI GCGC 3 cut(s) 6, 217, 1054
GsaI CCCAGC 2 cut(s) 337, 994
GsuI CTGGAG 2 cut(s) 146, 534
HaeIII GGCC 1 cut(s) 814
HapII CCGG 5 cut(s) 97, 464, 591, 815, 850
HgaI GACGC 3 cut(s) 57, 727, 940
HhaI GCGC 3 cut(s) 7, 218, 1055
Hin1I GRCGYC 2 cut(s) 738, 951
Hin1II CATG 7 cut(s) 746, 797, 888, 904, 917, 1036, 1053
Hin6I GCGC 3 cut(s) 5, 216, 1053
HinP1I GCGC 3 cut(s) 5, 216, 1053
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 5 cut(s) 83, 110, 268, 428, 752
HpaII CCGG 5 cut(s) 97, 464, 591, 815, 850
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 4 cut(s) 703, 751, 871, 910
Hpy188I TCNGA 4 cut(s) 109, 372, 568, 727
Hpy188III TCNNGA 6 cut(s) 346, 521, 668, 864, 970, 1012
Hpy8I GTNNAC 4 cut(s) 703, 751, 871, 910
Hpy99I CGWCG 4 cut(s) 73, 170, 727, 752
HpyAV CCTTC 2 cut(s) 280, 443
HpyCH4III ACNGT 2 cut(s) 485, 707
HpyCH4IV ACGT 2 cut(s) 165, 693
HpyCH4V TGCA 7 cut(s) 538, 615, 714, 803, 917, 926, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 159, 185, 524, 923, 1052
HpyF3I CTNAG 3 cut(s) 369, 426, 675
HpySE526I ACGT 2 cut(s) 165, 693
Hsp92I GRCGYC 2 cut(s) 738, 951
Hsp92II CATG 7 cut(s) 746, 797, 888, 904, 917, 1036, 1053
HspAI GCGC 3 cut(s) 5, 216, 1053
Kzo9I GATC 4 cut(s) 48, 272, 472, 488
LmnI GCTCC 5 cut(s) 130, 161, 330, 362, 515
LweI GCATC 3 cut(s) 3, 403, 1064
MaeII ACGT 2 cut(s) 165, 693
MaeIII GTNAC 4 cut(s) 119, 457, 479, 878
MalI GATC 4 cut(s) 50, 274, 474, 490
MboI GATC 4 cut(s) 48, 272, 472, 488
MboII GAAGA 7 cut(s) 214, 350, 458, 791, 794, 956, 1039
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 716, 785
MlyI GAGTC 4 cut(s) 92, 104, 437, 746
MmeI TCCRAC 4 cut(s) 111, 132, 676, 705
MnlI CCTC 7 cut(s) 121, 158, 214, 342, 517, 572, 670
MseI TTAA 3 cut(s) 312, 468, 651
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 2 cut(s) 29, 54
MspI CCGG 5 cut(s) 97, 464, 591, 815, 850
MspR9I CCNGG 4 cut(s) 41, 125, 464, 770
MvaI CCWGG 3 cut(s) 41, 125, 770
MvnI CGCG 4 cut(s) 7, 218, 347, 1073
MwoI GCNNNNNNNGC 6 cut(s) 13, 159, 185, 524, 923, 1052
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 900
NdeII GATC 4 cut(s) 48, 272, 472, 488
NlaIII CATG 7 cut(s) 746, 797, 888, 904, 917, 1036, 1053
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 119, 457, 479, 878
NruI TCGCGA 1 cut(s) 347
NsbI TGCGCA 1 cut(s) 1054
NspI RCATGY 4 cut(s) 797, 888, 1036, 1053
PaeI GCATGC 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 521
PasI CCCWGGG 1 cut(s) 769
PciI ACATGT 1 cut(s) 1032
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 2 cut(s) 755, 950
PleI GAGTC 4 cut(s) 91, 104, 436, 746
PpsI GAGTC 4 cut(s) 91, 104, 436, 746
PscI ACATGT 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 3 cut(s) 39, 123, 768
PspFI CCCAGC 2 cut(s) 333, 990
PspGI CCWGG 3 cut(s) 39, 123, 768
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 2 cut(s) 755, 950
PvuII CAGCTG 1 cut(s) 54
RruI TCGCGA 1 cut(s) 347
RsaI GTAC 6 cut(s) 197, 209, 647, 935, 1022, 1061
RsaNI GTAC 6 cut(s) 196, 208, 646, 934, 1021, 1060
RseI CAYNNNNRTG 1 cut(s) 905
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 1 cut(s) 749
SaqAI TTAA 3 cut(s) 312, 468, 651
Sau3AI GATC 4 cut(s) 48, 272, 472, 488
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 4 cut(s) 92, 104, 437, 746
ScrFI CCNGG 4 cut(s) 41, 125, 464, 770
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 3 cut(s) 3, 403, 1064
Sfr274I CTCGAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SphI GCATGC 1 cut(s) 797
Sse9I AATT 2 cut(s) 716, 785
SsiI CCGC 8 cut(s) 7, 27, 44, 57, 160, 218, 811, 888
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 4 cut(s) 39, 123, 462, 768
StyI CCWWGG 2 cut(s) 33, 900
TaaI ACNGT 2 cut(s) 485, 707
TaiI ACGT 2 cut(s) 168, 696
TaqI TCGA 6 cut(s) 71, 78, 271, 431, 522, 750
TasI AATT 2 cut(s) 716, 785
TatI WGTACW 1 cut(s) 645
TauI GCSGC 4 cut(s) 10, 47, 814, 891
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 312, 468, 651
Tru9I TTAA 3 cut(s) 312, 468, 651
TscAI CASTG 5 cut(s) 415, 488, 517, 679, 883
TseFI GTSAC 4 cut(s) 119, 457, 479, 878
Tsp45I GTSAC 4 cut(s) 119, 457, 479, 878
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 107, 951
TspRI CASTG 5 cut(s) 415, 488, 517, 679, 883
Tth111I GACNNNGTC 2 cut(s) 755, 950
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 716
XceI RCATGY 4 cut(s) 797, 888, 1036, 1053
XhoI CTCGAG 1 cut(s) 521
XmiI GTMKAC 2 cut(s) 702, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.