Rroxscaffold_2G00146620

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011119
Physical Location & Seq
Forward (+)
84490025 .. 84492454
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146620.1

Sequence Viewer

Length: 984 bp
ATGGCTCCTCCTCGTTTGACGCTGGTTCTGTCCCTCTTGGCCGTGGTCCTGATCACCTGCGCCGCGTCGAGCTTCGATGAGTCCAACCCCATCCGGTTGGCCTCCGACGGCCTCCGTGAGCTGGAGGACCAGGTCGTCCAAGTCCTCGGCCAGGTTCGCCACGTCCGCTCCTTCGCTCGGTTTGCTTTCAGGTACGAGAAGAGGTACGAGAGCGTGGAGGAGATGAGGCGGCGATTCGAGATTTTCGCCGAGAACAAGAAGCTGATTCGATCCACCAACAGGAAGGGCTTGTCTTACAAGCTCGGTGTTAACCGTAAAATTTACAAGATTGCTAGTGGGAAAAACTGGAGAGACGAAGGCATAGTCACCCCAGTTAAAGACCAAGGCCACTGTGGATCTTGCTGGACTTTCAGTACCACTGGAGCTCTTGAGGCAGCTTATGTACAAGCATTTGGCAAGCAAATCTCTCTGTCCGAACAGCAGCTTGTGGATTGTGCTGGAGCTTTCAACAACTTTGGGTGCAGCGGTGGGTTGCCATCTCAAGCCTTTGAGTACATCAAATACAACGGCGGTCTTGACACCGAGCAAGCATATCCTTACACCGCAGTAGATGGTGCCTGTAAATTTTCATCTGAAAATGTCGGTGTCCGAGTCCTTGACTCTGTCAATATTACCCTGAATGATGAGGAAGAATTGAAGCACGCAGTTGCATTTGTTAGGCCAGTCAGCGTAGCATTCCAGGTGGTCCAAGATTTCCGATTGTACAAGTCGGGAGTTTACACCAGTGAGACATGCGGCAACACTCCCATGGATGTGAACCATGCTGTTCTTGCTGTTGGATATGGAGTGGAAAACGGTGTCCCATACTGGCTTATTAAGAACTCCTGGGGGCAAAGCTGGGGTGACAATGGCTACTTCAAGATGGAGTATGGGAAGAACATGTGTGGTGTTGCAACTTGTGCTTCCTACCCGGTTGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

327

Amino Acids

36.26

Weight (kDa)

7.5

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 58 - 104 1.7e-09 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 114 - 325 3.7e-80 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 168
AccII CGCG 1 cut(s) 65
AciI CCGC 7 cut(s) 63, 166, 229, 525, 570, 603, 795
AclWI GGATC 2 cut(s) 264, 403
AcoI YGGCCR 2 cut(s) 39, 148
AcsI RAATTY 2 cut(s) 318, 623
AfaI GTAC 6 cut(s) 194, 206, 415, 444, 554, 764
AfiI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 3 cut(s) 508, 697, 919
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 4 cut(s) 129, 150, 738, 884
AluBI AGCT 9 cut(s) 72, 121, 262, 301, 425, 437, 484, 503, 897
AluI AGCT 9 cut(s) 72, 121, 262, 301, 425, 437, 484, 503, 897
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 345, 782
AlwI GGATC 2 cut(s) 264, 403
AoxI GGCC 6 cut(s) 39, 99, 109, 148, 385, 719
ApeKI GCWGC 3 cut(s) 434, 481, 522
ApoI RAATTY 2 cut(s) 318, 623
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 46, 127, 745
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 3 cut(s) 46, 358, 914
AvaII GGWCC 3 cut(s) 46, 127, 745
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 446, 493, 534
BccI CCATC 4 cut(s) 98, 544, 605, 916
BceAI ACGGC 3 cut(s) 26, 124, 583
BciT130I CCWGG 4 cut(s) 131, 152, 740, 886
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 2 cut(s) 345, 782
BfaI CTAG 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 6 cut(s) 63, 230, 435, 482, 523, 796
BlsI GCNGC 6 cut(s) 64, 231, 436, 483, 524, 797
Bme1390I CCNGG 5 cut(s) 131, 152, 740, 886, 971
Bme18I GGWCC 3 cut(s) 46, 127, 745
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 46, 127, 745
BmiI GGNNCC 2 cut(s) 6, 616
BmrFI CCNGG 5 cut(s) 131, 152, 740, 886, 971
BmrI ACTGGG 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 365
BpmI CTGGAG 4 cut(s) 143, 367, 441, 519
BpuEI CTTGAG 2 cut(s) 449, 525
BpuMI CCSGG 1 cut(s) 971
BsaJI CCNNGG 5 cut(s) 42, 145, 382, 807, 885
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
Bse1I ACTGG 6 cut(s) 350, 371, 424, 722, 783, 872
BseBI CCWGG 4 cut(s) 131, 152, 740, 886
BseDI CCNNGG 5 cut(s) 42, 145, 382, 807, 885
BseGI GGATG 2 cut(s) 90, 817
BseLI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
BseNI ACTGG 6 cut(s) 350, 371, 424, 722, 783, 872
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 3 cut(s) 446, 493, 534
BseYI CCCAGC 1 cut(s) 897
BsgI GTGCAG 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 6 cut(s) 41, 101, 111, 150, 387, 721
BshNI GGYRCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 2 cut(s) 94, 971
BslFI GGGAC 2 cut(s) 16, 845
BslI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
BsmAI GTCTC 2 cut(s) 345, 782
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 16, 845
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 6 cut(s) 41, 101, 111, 150, 387, 721
Bsp1286I GDGCHC 1 cut(s) 427
Bsp1407I TGTACA 2 cut(s) 442, 762
Bsp143I GATC 3 cut(s) 51, 269, 395
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 7 cut(s) 63, 166, 229, 525, 570, 603, 795
BspANI GGCC 6 cut(s) 41, 101, 111, 150, 387, 721
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 6, 616
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 264, 403
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 168
BsrGI TGTACA 2 cut(s) 442, 762
BsrI ACTGG 6 cut(s) 350, 371, 424, 722, 783, 872
BssECI CCNNGG 5 cut(s) 42, 145, 382, 807, 885
BssMI GATC 3 cut(s) 51, 269, 395
BssT1I CCWWGG 2 cut(s) 382, 807
Bst2UI CCWGG 4 cut(s) 131, 152, 740, 886
Bst4CI ACNGT 3 cut(s) 314, 392, 857
Bst6I CTCTTC 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 959
BstAUI TGTACA 2 cut(s) 442, 762
BstC8I GCNNGC 3 cut(s) 458, 588, 702
BstDSI CCRYGG 2 cut(s) 42, 807
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 90, 817
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 54, 272, 398
BstMAI GTCTC 2 cut(s) 345, 782
BstMBI GATC 3 cut(s) 51, 269, 395
BstMWI GCNNNNNNNGC 6 cut(s) 156, 165, 182, 431, 830, 959
BstNI CCWGG 4 cut(s) 131, 152, 740, 886
BstNSI RCATGY 2 cut(s) 795, 943
BstSCI CCNGG 5 cut(s) 129, 150, 738, 884, 969
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 446, 493, 534
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 6 cut(s) 41, 101, 111, 150, 387, 721
BtgI CCRYGG 2 cut(s) 42, 807
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 90, 817
BtsIMutI CAGTG 3 cut(s) 388, 417, 790
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 458, 588, 702
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 46, 127, 745
CseI GACGC 2 cut(s) 28, 54
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 6 cut(s) 193, 205, 414, 443, 553, 763
CviAII CATG 4 cut(s) 792, 808, 821, 940
CviQI GTAC 6 cut(s) 193, 205, 414, 443, 553, 763
DpnI GATC 3 cut(s) 53, 271, 397
DpnII GATC 3 cut(s) 51, 269, 395
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 39, 148
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 382, 807
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 3 cut(s) 46, 127, 745
Eco53kI GAGCTC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRII CCWGG 4 cut(s) 129, 150, 738, 884
EcoT14I CCWWGG 2 cut(s) 382, 807
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 382, 807
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 4 cut(s) 795, 811, 824, 943
FaqI GGGAC 2 cut(s) 16, 845
FatI CATG 4 cut(s) 791, 807, 820, 939
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 6 cut(s) 63, 230, 435, 482, 523, 796
FokI GGATG 2 cut(s) 77, 824
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 63, 230, 435, 482, 523, 796
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 61
GluI GCNGC 6 cut(s) 63, 230, 435, 482, 523, 796
GsaI CCCAGC 1 cut(s) 901
GsuI CTGGAG 4 cut(s) 143, 367, 441, 519
HaeIII GGCC 6 cut(s) 41, 101, 111, 150, 387, 721
HapII CCGG 2 cut(s) 94, 971
HgaI GACGC 2 cut(s) 28, 54
HhaI GCGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 795, 811, 824, 943
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 80, 234, 265, 651, 659
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 2 cut(s) 94, 971
HphI GGTGA 3 cut(s) 46, 358, 914
Hpy166II GTNNAC 3 cut(s) 310, 778, 817
Hpy188I TCNGA 5 cut(s) 106, 475, 634, 650, 758
Hpy188III TCNNGA 6 cut(s) 49, 238, 428, 575, 771, 919
Hpy8I GTNNAC 3 cut(s) 310, 778, 817
Hpy99I CGWCG 2 cut(s) 70, 110
HpyAV CCTTC 3 cut(s) 181, 277, 350
HpyCH4III ACNGT 3 cut(s) 314, 392, 857
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 522, 710, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 165, 182, 431, 830, 959
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 4 cut(s) 795, 811, 824, 943
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 3 cut(s) 51, 269, 395
LmnI GCTCC 4 cut(s) 10, 173, 422, 500
Lsp1109I GCAGC 3 cut(s) 446, 493, 534
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 364, 902
MalI GATC 3 cut(s) 53, 271, 397
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 51, 269, 395
MboII GAAGA 3 cut(s) 211, 701, 946
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 3 cut(s) 318, 623, 692
MlyI GAGTC 3 cut(s) 89, 653, 660
MmeI TCCRAC 3 cut(s) 108, 129, 817
MseI TTAA 4 cut(s) 309, 375, 876, 982
MslI CAYNNNNRTG 2 cut(s) 806, 812
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 2 cut(s) 94, 971
MspR9I CCNGG 5 cut(s) 131, 152, 740, 886, 971
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 4 cut(s) 131, 152, 740, 886
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 6 cut(s) 156, 165, 182, 431, 830, 959
NciI CCSGG 1 cut(s) 971
NcoI CCATGG 1 cut(s) 807
NdeII GATC 3 cut(s) 51, 269, 395
NlaIII CATG 4 cut(s) 795, 811, 824, 943
NlaIV GGNNCC 2 cut(s) 6, 616
NmeAIII GCCGAG 2 cut(s) 126, 274
NmuCI GTSAC 2 cut(s) 364, 902
NspI RCATGY 2 cut(s) 795, 943
PaqCI CACCTGC 1 cut(s) 65
PciI ACATGT 1 cut(s) 939
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 2 cut(s) 234, 265
PflFI GACNNNGTC 2 cut(s) 131, 662
PkrI GCNGC 6 cut(s) 64, 231, 436, 483, 524, 797
PleI GAGTC 3 cut(s) 88, 653, 659
PpsI GAGTC 3 cut(s) 88, 653, 659
PscI ACATGT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 4 cut(s) 129, 150, 738, 884
PspFI CCCAGC 1 cut(s) 897
PspGI CCWGG 4 cut(s) 129, 150, 738, 884
PspN4I GGNNCC 2 cut(s) 6, 616
PspPI GGNCC 3 cut(s) 46, 127, 745
PsuI RGATCY 1 cut(s) 395
PsyI GACNNNGTC 2 cut(s) 131, 662
RsaI GTAC 6 cut(s) 194, 206, 415, 444, 554, 764
RsaNI GTAC 6 cut(s) 193, 205, 414, 443, 553, 763
RseI CAYNNNNRTG 2 cut(s) 806, 812
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 4 cut(s) 309, 375, 876, 982
SatI GCNGC 6 cut(s) 63, 230, 435, 482, 523, 796
Sau3AI GATC 3 cut(s) 51, 269, 395
Sau96I GGNCC 3 cut(s) 46, 127, 745
SchI GAGTC 3 cut(s) 89, 653, 660
ScrFI CCNGG 5 cut(s) 131, 152, 740, 886, 971
SduI GDGCHC 1 cut(s) 427
SexAI ACCWGGT 1 cut(s) 129
SinI GGWCC 3 cut(s) 46, 127, 745
SmiMI CAYNNNNRTG 2 cut(s) 806, 812
SmlI CTYRAG 2 cut(s) 428, 540
SmoI CTYRAG 2 cut(s) 428, 540
Sse9I AATT 3 cut(s) 318, 623, 692
SsiI CCGC 7 cut(s) 63, 166, 229, 525, 570, 603, 795
SspI AATATT 1 cut(s) 670
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 5 cut(s) 129, 150, 738, 884, 969
StyI CCWWGG 2 cut(s) 382, 807
TaaI ACNGT 3 cut(s) 314, 392, 857
TaiI ACGT 1 cut(s) 165
TaqI TCGA 4 cut(s) 68, 75, 237, 268
TasI AATT 3 cut(s) 318, 623, 692
TatI WGTACW 3 cut(s) 442, 552, 762
TauI GCSGC 3 cut(s) 65, 232, 798
TfiI GAWTC 2 cut(s) 234, 265
Tru1I TTAA 4 cut(s) 309, 375, 876, 982
Tru9I TTAA 4 cut(s) 309, 375, 876, 982
TscAI CASTG 3 cut(s) 395, 424, 790
TseFI GTSAC 2 cut(s) 364, 902
TseI GCWGC 3 cut(s) 434, 481, 522
Tsp45I GTSAC 2 cut(s) 364, 902
TspDTI ATGAA 1 cut(s) 618
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 3 cut(s) 395, 424, 790
Tth111I GACNNNGTC 2 cut(s) 131, 662
VpaK11BI GGWCC 3 cut(s) 46, 127, 745
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 2 cut(s) 318, 623
XceI RCATGY 2 cut(s) 795, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.