Prupe.7G198500_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011119
Physical Location & Seq
Forward (+)
18652609 .. 18654975
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G198500.1

Sequence Viewer

Length: 1077 bp
ATGGCTCGCGTGACGCTGGTCCTGTCCGCCGCCTTGGTCCTGGTGGCGATCAGCTGCGGCGCAGCAGCATCGAGCTTCGACGAGTCCAACCCCATCAGATTGGTATCGGATGGCCTCCGTGAGCTGGAGCAGCAAGTCGTCCAAGTCCTCGGCTACTCTCCCCGCGCCCTCCACTTCGCCCGCTTCGCTCACCGGTACGGGAAGAAATATGAGAGCGTGGAGGAGATGAAGCTGCGGTATGAGATTTTCTCGGAGAATAAGAAGCTGATTCGATCCACAAACAAGAAGGGCTTGCCTTACACTCTTGCTGTCAATCGGTTTGCTGATTGGAGTTGGGAAGAGTTCAGAAGGCAGAGGTTGGGAGCTGCCCAGAACTGCTCTGCCACCACAAAGGGCAGCCACAAGCTCACTGATGCCGTTCTTCCTGAATCGAAAAACTGGAGAGAAGAAGGCATAGTGACCCCAGTTAAAGACCAAGGTCACTGTGGATCTTGCTGGACATTCAGCACCACTGGGGCTCTTGAGGCAGCTTATGTGCAGGCATTCGGAAAGCAAATCTCTCTCTCTGAGCAGCAGCTTGTGGATTGTGCTGGAGCTTTCAATAACTTTGGCTGCAATGGTGGGTTGCCATCTCAAGCTTTTGAGTACATCAAATACAACGGCGGTCTCGACACCGAGGCTGCATATCCTTATGTTGGAACCGACGGGGCTTGCAAATTTTCAGCTGAAAATGTTGGTGCCCAAGTGCTCGACTCTGTCAATATCACCCTGGGTGATGAACAAGAACTAAAGCATGCAGTTGCGTTTGTGAGGCCAGTCAGCGTCGCCTTTCAGGTGGTCAAAAGTTTCCGATTTTACAAGTCGGGAGTCTACACCAGTGACACTTGTGGCAGCAGTCCCATGGATGTGAACCATGCTGTTCTTGCAGTTGGGTATGGAGAGGAAGGCGGTGTCCCCTTCTGGCTCATCAAGAACTCTTGGGGAGAAAGCTGGGGTGACAATGGCTACTTTAAGATGGAGTTTGGGAAGAACATGTGCGGTGTTGCAACATGTGCATCGTACCCGATTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.18

Weight (kDa)

6.34

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 737
AccI GTMKAC 1 cut(s) 870
AccII CGCG 2 cut(s) 9, 165
AciI CCGC 9 cut(s) 27, 30, 57, 163, 181, 235, 663, 948, 1038
AclWI GGATC 2 cut(s) 267, 496
AcsI RAATTY 1 cut(s) 716
AfaI GTAC 3 cut(s) 197, 647, 1061
AfiI CCNNNNNNNGG 2 cut(s) 124, 695
AflIII ACRYGT 2 cut(s) 1032, 1049
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 601
AjnI CCWGG 2 cut(s) 39, 768
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 2 cut(s) 267, 496
AoxI GGCC 2 cut(s) 112, 812
ApoI RAATTY 1 cut(s) 716
AsiGI ACCGGT 1 cut(s) 192
AspLEI GCGC 2 cut(s) 62, 167
AspS9I GGNCC 2 cut(s) 19, 37
AsuHPI GGTGA 4 cut(s) 182, 757, 785, 1007
AvaII GGWCC 2 cut(s) 19, 37
BaeGI GKGCMC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 737
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 750
BccI CCATC 4 cut(s) 101, 104, 637, 1009
BceAI ACGGC 2 cut(s) 401, 676
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciT130I CCWGG 2 cut(s) 41, 770
BcoDI GTCTC 1 cut(s) 671
Bme1390I CCNGG 2 cut(s) 41, 770
Bme18I GGWCC 2 cut(s) 19, 37
BmgT120I GGNCC 2 cut(s) 19, 37
BmiI GGNNCC 2 cut(s) 700, 739
BmrFI CCNGG 2 cut(s) 41, 770
BmrI ACTGGG 2 cut(s) 458, 522
BmsI GCATC 3 cut(s) 77, 403, 1064
BmuI ACTGGG 2 cut(s) 458, 522
BoxI GACNNNNGTC 2 cut(s) 17, 477
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 3 cut(s) 146, 460, 612
BpuEI CTTGAG 2 cut(s) 542, 618
BsaBI GATNNNNATC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 7 cut(s) 33, 148, 475, 675, 768, 769, 900
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 695
Bse118I RCCGGY 1 cut(s) 192
Bse1I ACTGG 5 cut(s) 443, 464, 517, 815, 876
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 2 cut(s) 41, 770
BseDI CCNNGG 7 cut(s) 33, 148, 475, 675, 768, 769, 900
BseGI GGATG 2 cut(s) 115, 910
BseJI GATNNNNATC 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 124, 695
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 5 cut(s) 443, 464, 517, 815, 876
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 742
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 9, 165
BshFI GGCC 2 cut(s) 114, 814
BshNI GGYRCC 1 cut(s) 737
BshTI ACCGGT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 882, 938
BslI CCNNNNNNNGG 2 cut(s) 124, 695
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 2 cut(s) 882, 938
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 2 cut(s) 114, 814
Bso31I GGTCTC 1 cut(s) 671
Bsp1286I GDGCHC 3 cut(s) 520, 742, 750
Bsp143I GATC 3 cut(s) 48, 272, 488
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 9 cut(s) 27, 30, 57, 163, 181, 235, 663, 948, 1038
BspANI GGCC 2 cut(s) 114, 814
BspCNI CTCAG 1 cut(s) 559
BspFNI CGCG 2 cut(s) 9, 165
BspLI GGNNCC 2 cut(s) 700, 739
BspPI GGATC 2 cut(s) 267, 496
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 192
BsrI ACTGG 5 cut(s) 443, 464, 517, 815, 876
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 7 cut(s) 33, 148, 475, 675, 768, 769, 900
BssMI GATC 3 cut(s) 48, 272, 488
BssT1I CCWWGG 3 cut(s) 33, 475, 900
Bst2UI CCWGG 2 cut(s) 41, 770
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstC8I GCNNGC 6 cut(s) 7, 181, 293, 540, 712, 795
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 2 cut(s) 115, 910
BstFNI CGCG 2 cut(s) 9, 165
BstHHI GCGC 2 cut(s) 62, 167
BstKTI GATC 3 cut(s) 51, 275, 491
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 3 cut(s) 48, 272, 488
BstMWI GCNNNNNNNGC 5 cut(s) 130, 185, 524, 923, 1052
BstNI CCWGG 2 cut(s) 41, 770
BstNSI RCATGY 3 cut(s) 797, 1036, 1053
BstPAI GACNNNNGTC 2 cut(s) 17, 477
BstSCI CCNGG 2 cut(s) 39, 768
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 2 cut(s) 9, 165
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 2 cut(s) 114, 814
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 2 cut(s) 115, 910
BtsIMutI CAGTG 4 cut(s) 408, 481, 510, 883
Cac8I GCNNGC 6 cut(s) 7, 181, 293, 540, 712, 795
CfoI GCGC 2 cut(s) 62, 167
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 19, 37
CseI GACGC 2 cut(s) 22, 811
Csp6I GTAC 3 cut(s) 196, 646, 1060
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 5 cut(s) 794, 901, 914, 1033, 1050
CviQI GTAC 3 cut(s) 196, 646, 1060
DdeI CTNAG 1 cut(s) 567
DpnI GATC 3 cut(s) 50, 274, 490
DpnII GATC 3 cut(s) 48, 272, 488
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 33, 475, 900
Eco24I GRGCYC 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 19, 37
EcoRII CCWGG 2 cut(s) 39, 768
EcoT14I CCWWGG 3 cut(s) 33, 475, 900
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 3 cut(s) 33, 475, 900
FaeI CATG 5 cut(s) 797, 904, 917, 1036, 1053
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 882, 938
FatI CATG 5 cut(s) 793, 900, 913, 1032, 1049
FauI CCCGC 2 cut(s) 170, 188
FblI GTMKAC 1 cut(s) 870
FokI GGATG 2 cut(s) 122, 917
FriOI GRGCYC 1 cut(s) 520
GlaI GCGC 2 cut(s) 61, 166
GsaI CCCAGC 1 cut(s) 994
GsuI CTGGAG 3 cut(s) 146, 460, 612
HaeIII GGCC 2 cut(s) 114, 814
HapII CCGG 1 cut(s) 193
HgaI GACGC 2 cut(s) 22, 811
HhaI GCGC 2 cut(s) 62, 167
Hin1II CATG 5 cut(s) 797, 904, 917, 1036, 1053
Hin6I GCGC 2 cut(s) 60, 165
HinP1I GCGC 2 cut(s) 60, 165
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 5 cut(s) 83, 268, 428, 752, 867
HpaII CCGG 1 cut(s) 193
HphI GGTGA 4 cut(s) 182, 757, 785, 1007
Hpy166II GTNNAC 2 cut(s) 871, 910
Hpy188I TCNGA 7 cut(s) 98, 109, 253, 347, 548, 568, 851
Hpy188III TCNNGA 5 cut(s) 425, 521, 668, 864, 970
Hpy8I GTNNAC 2 cut(s) 871, 910
Hpy99I CGWCG 3 cut(s) 83, 707, 827
HpyAV CCTTC 5 cut(s) 280, 342, 443, 938, 967
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4V TGCA 8 cut(s) 538, 615, 683, 714, 797, 926, 1046, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 185, 524, 923, 1052
HpyF3I CTNAG 1 cut(s) 567
Hsp92II CATG 5 cut(s) 797, 904, 917, 1036, 1053
HspAI GCGC 2 cut(s) 60, 165
Kzo9I GATC 3 cut(s) 48, 272, 488
LmnI GCTCC 3 cut(s) 127, 362, 593
LweI GCATC 3 cut(s) 77, 403, 1064
MaeIII GTNAC 5 cut(s) 10, 457, 479, 878, 995
MalI GATC 3 cut(s) 50, 274, 490
MboI GATC 3 cut(s) 48, 272, 488
MboII GAAGA 5 cut(s) 214, 350, 413, 458, 1039
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 3 cut(s) 520, 742, 750
MluCI AATT 1 cut(s) 716
MlyI GAGTC 3 cut(s) 92, 746, 876
MmeI TCCRAC 2 cut(s) 111, 676
MnlI CCTC 9 cut(s) 125, 158, 179, 214, 348, 517, 670, 804, 934
MseI TTAA 2 cut(s) 468, 1011
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 2 cut(s) 54, 725
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 2 cut(s) 41, 770
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 2 cut(s) 41, 770
MvnI CGCG 2 cut(s) 9, 165
MwoI GCNNNNNNNGC 5 cut(s) 130, 185, 524, 923, 1052
NcoI CCATGG 1 cut(s) 900
NdeII GATC 3 cut(s) 48, 272, 488
NlaIII CATG 5 cut(s) 797, 904, 917, 1036, 1053
NlaIV GGNNCC 2 cut(s) 700, 739
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 5 cut(s) 10, 457, 479, 878, 995
NspI RCATGY 3 cut(s) 797, 1036, 1053
PaeI GCATGC 1 cut(s) 797
PasI CCCWGGG 1 cut(s) 769
PciI ACATGT 2 cut(s) 1032, 1049
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 268, 428
PflFI GACNNNGTC 1 cut(s) 755
PinAI ACCGGT 1 cut(s) 192
PleI GAGTC 3 cut(s) 91, 746, 875
PpsI GAGTC 3 cut(s) 91, 746, 875
PscI ACATGT 2 cut(s) 1032, 1049
PshAI GACNNNNGTC 2 cut(s) 17, 477
Psp6I CCWGG 2 cut(s) 39, 768
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 2 cut(s) 39, 768
PspN4I GGNNCC 2 cut(s) 700, 739
PspPI GGNCC 2 cut(s) 19, 37
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 1 cut(s) 755
PvuII CAGCTG 2 cut(s) 54, 725
RsaI GTAC 3 cut(s) 197, 647, 1061
RsaNI GTAC 3 cut(s) 196, 646, 1060
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 2 cut(s) 468, 1011
Sau3AI GATC 3 cut(s) 48, 272, 488
Sau96I GGNCC 2 cut(s) 19, 37
SchI GAGTC 3 cut(s) 92, 746, 876
ScrFI CCNGG 2 cut(s) 41, 770
SduI GDGCHC 3 cut(s) 520, 742, 750
SfaNI GCATC 3 cut(s) 77, 403, 1064
SinI GGWCC 2 cut(s) 19, 37
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SphI GCATGC 1 cut(s) 797
Sse9I AATT 1 cut(s) 716
SsiI CCGC 9 cut(s) 27, 30, 57, 163, 181, 235, 663, 948, 1038
StyD4I CCNGG 2 cut(s) 39, 768
StyI CCWWGG 3 cut(s) 33, 475, 900
TaaI ACNGT 1 cut(s) 485
TaqI TCGA 6 cut(s) 71, 78, 271, 431, 669, 750
TasI AATT 1 cut(s) 716
TatI WGTACW 1 cut(s) 645
TauI GCSGC 2 cut(s) 32, 60
TfiI GAWTC 2 cut(s) 268, 428
Tru1I TTAA 2 cut(s) 468, 1011
Tru9I TTAA 2 cut(s) 468, 1011
TscAI CASTG 4 cut(s) 415, 488, 517, 883
TseFI GTSAC 5 cut(s) 10, 457, 479, 878, 995
Tsp45I GTSAC 5 cut(s) 10, 457, 479, 878, 995
TspDTI ATGAA 2 cut(s) 242, 792
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 4 cut(s) 415, 488, 517, 883
Tth111I GACNNNGTC 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 19, 37
XapI RAATTY 1 cut(s) 716
XceI RCATGY 3 cut(s) 797, 1036, 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.