MD15G1217900.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011119
Physical Location & Seq
Reverse (-)
17545504 .. 17548383
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1217900.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGCTCGGCTGACGCTATTCTTGTCGGCCGCCTTGGCCCTGGCGGCGATCAGCTGCGTCGCGGCAGCATCGAGCTTCGATGAGTCCAACCCAATCCGATTGGTGTCCGACTCCCTAAGTGACATGGAGGAGCAAGTCGTCCAAGTCCTCGGCAACTGCCGCCACGTCCTCTCCTTCGCCCGCTTCGCTCACAGGTACGGGAAGAAGTACGAGAGCGCGGAGGAGATGAAGCTGCGGTATGCGATTTTCTCGGAGAATAAGAAGCTGATTCGATCTACCAATAAGAAGGGCTTGCCGTACACTCTTGCTCTCAATCGGTTTGCTGATTGGAGCTGGGAAGAGTTCACAAGGCACAGGTTGGGAGCTGCTCAGAACTGCTCCGCCACCACAAAGGGCAACCACAAGCTCACTGATGCCGTTCTCCCTGACTCGAAAAACTGGAAAGAAGAAGGCATAGTGACTCCAGTTAAAGATCAAGGTCACTGTGGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCAGCGTATGTGCAGGCCTTCGGAAAGCAGATCTCCCTATCTGAGCAGCAGCTTGTGGATTGCGCTGGCGCTTTCAACAATAACGGCTGCAGTGGTGGGTTGCCATCTCAAGCATTTGAGTACATCAAGTACAATGGCGGTCTTGACACCGAGGCTGCTTATCCGTATGTTGGAGTCGACGGTGTTTGCAAATATTCGGCAGAAAATGTTGGTGTCCAAGTCGTCGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCCGTTGCATTTGTGCGGCCTGTCAGTGTGGCGTTTCAGGTCATCAATGGTTTCCGCTTTTACAAGTCGGGAGTTTACACCAGTGACACATGCGGCACCGGCCCCATGGATGTGAACCATGCAGTTCTTGCAGTTGGGTACGGAGTGGAAGGCGGCGTCCCGTACTGGCTCATCAAGAACTCTTGGGGAGAAAGCTGGGGCGACAATGGCTACTTCAAGATGGAGTATGGGAAGAACATGTGTGGTGTTGCAACATGTGCATCGTACCCGGTTGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

38.94

Weight (kDa)

6.01

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 59 - 115 3.9e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 141 - 356 2.5e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 890
AccI GTMKAC 2 cut(s) 702, 750
AccII CGCG 3 cut(s) 62, 218, 1073
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 798
AcyI GRCGYC 1 cut(s) 951
AfaI GTAC 8 cut(s) 197, 209, 299, 647, 656, 935, 959, 1061
AfiI CCNNNNNNNGG 1 cut(s) 695
AflIII ACRYGT 2 cut(s) 1032, 1049
AgsI TTSAA 3 cut(s) 601, 790, 1012
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 39, 768
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 5 cut(s) 27, 36, 540, 812, 895
ApeKI GCWGC 9 cut(s) 54, 65, 232, 365, 527, 571, 574, 612, 680
AspLEI GCGC 3 cut(s) 218, 590, 596
AspS9I GGNCC 2 cut(s) 37, 896
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 521
BanI GGYRCC 1 cut(s) 890
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 9 cut(s) 41, 77, 219, 352, 539, 583, 586, 599, 667
BccI CCATC 2 cut(s) 637, 1009
BceAI ACGGC 4 cut(s) 280, 401, 625, 782
BciT130I CCWGG 2 cut(s) 41, 770
BcnI CCSGG 1 cut(s) 1064
BfmI CTRYAG 1 cut(s) 613
BfoI RGCGCY 1 cut(s) 597
BglI GCCNNNNNGGC 2 cut(s) 35, 44
BglII AGATCT 1 cut(s) 555
Bme1390I CCNGG 3 cut(s) 41, 770, 1064
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 37, 896
BmiI GGNNCC 2 cut(s) 892, 898
BmrFI CCNGG 3 cut(s) 41, 770, 1064
BmsI GCATC 3 cut(s) 77, 403, 1064
BpmI CTGGAG 2 cut(s) 447, 534
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 1064
BsaHI GRCGYC 1 cut(s) 951
BsaJI CCNNGG 7 cut(s) 33, 39, 148, 675, 768, 769, 900
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 5 cut(s) 443, 464, 517, 876, 965
BseBI CCWGG 2 cut(s) 41, 770
BseDI CCNNGG 7 cut(s) 33, 39, 148, 675, 768, 769, 900
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 2 cut(s) 383, 558
BseNI ACTGG 5 cut(s) 443, 464, 517, 876, 965
BseRI GAGGAG 2 cut(s) 143, 236
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 9 cut(s) 41, 77, 219, 352, 539, 583, 586, 599, 667
BseYI CCCAGC 2 cut(s) 333, 990
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 3 cut(s) 62, 218, 1073
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 5 cut(s) 29, 38, 542, 814, 897
BshNI GGYRCC 1 cut(s) 890
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 2 cut(s) 894, 1064
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 938
BsnI GGCC 5 cut(s) 29, 38, 542, 814, 897
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 5 cut(s) 48, 272, 472, 488, 555
Bsp19I CCATGG 1 cut(s) 900
BspANI GGCC 5 cut(s) 29, 38, 542, 814, 897
BspCNI CTCAG 2 cut(s) 382, 559
BspFNI CGCG 3 cut(s) 62, 218, 1073
BspLI GGNNCC 2 cut(s) 892, 898
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 890
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 5 cut(s) 443, 464, 517, 876, 965
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 7 cut(s) 33, 39, 148, 675, 768, 769, 900
BssMI GATC 5 cut(s) 48, 272, 472, 488, 555
BssNI GRCGYC 1 cut(s) 951
BssT1I CCWWGG 2 cut(s) 33, 900
Bst2UI CCWGG 2 cut(s) 41, 770
Bst4CI ACNGT 2 cut(s) 485, 707
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 951
BstAPI GCANNNNNTGC 2 cut(s) 923, 1052
BstC8I GCNNGC 5 cut(s) 181, 293, 540, 592, 795
BstDEI CTNAG 3 cut(s) 116, 369, 567
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 3 cut(s) 62, 218, 1073
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 3 cut(s) 218, 590, 596
BstKTI GATC 5 cut(s) 51, 275, 475, 491, 558
BstMBI GATC 5 cut(s) 48, 272, 472, 488, 555
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 9 cut(s) 35, 44, 159, 185, 524, 894, 923, 1002, 1052
BstNI CCWGG 2 cut(s) 41, 770
BstNSI RCATGY 4 cut(s) 797, 888, 1036, 1053
BstSCI CCNGG 3 cut(s) 39, 768, 1062
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 3 cut(s) 62, 218, 1073
BstV1I GCAGC 9 cut(s) 41, 77, 219, 352, 539, 583, 586, 599, 667
BstX2I RGATCY 2 cut(s) 488, 555
BstYI RGATCY 2 cut(s) 488, 555
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 5 cut(s) 29, 38, 542, 814, 897
BtgI CCRYGG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 910
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 6 cut(s) 408, 481, 510, 622, 826, 883
Cac8I GCNNGC 5 cut(s) 181, 293, 540, 592, 795
CfoI GCGC 3 cut(s) 218, 590, 596
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 2 cut(s) 37, 896
CseI GACGC 3 cut(s) 22, 46, 940
Csp6I GTAC 8 cut(s) 196, 208, 298, 646, 655, 934, 958, 1060
CviAII CATG 7 cut(s) 124, 794, 885, 901, 914, 1033, 1050
CviQI GTAC 8 cut(s) 196, 208, 298, 646, 655, 934, 958, 1060
DdeI CTNAG 3 cut(s) 116, 369, 567
DpnI GATC 5 cut(s) 50, 274, 474, 490, 557
DpnII GATC 5 cut(s) 48, 272, 472, 488, 555
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 518
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 33, 900
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 520
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 39, 768
EcoT14I CCWWGG 2 cut(s) 33, 900
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 33, 900
FaeI CATG 7 cut(s) 127, 797, 888, 904, 917, 1036, 1053
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 938
FatI CATG 7 cut(s) 123, 793, 884, 900, 913, 1032, 1049
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 2 cut(s) 702, 750
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 1 cut(s) 520
GlaI GCGC 3 cut(s) 217, 589, 595
GsaI CCCAGC 2 cut(s) 337, 994
GsuI CTGGAG 2 cut(s) 447, 534
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 5 cut(s) 29, 38, 542, 814, 897
HapII CCGG 2 cut(s) 894, 1064
HgaI GACGC 3 cut(s) 22, 46, 940
HhaI GCGC 3 cut(s) 218, 590, 596
Hin1I GRCGYC 1 cut(s) 951
Hin1II CATG 7 cut(s) 127, 797, 888, 904, 917, 1036, 1053
Hin6I GCGC 3 cut(s) 216, 588, 594
HinP1I GCGC 3 cut(s) 216, 588, 594
HincII GTYRAC 2 cut(s) 703, 751
HindII GTYRAC 2 cut(s) 703, 751
HinfI GANTC 7 cut(s) 83, 110, 268, 428, 460, 699, 752
HpaII CCGG 2 cut(s) 894, 1064
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 6 cut(s) 300, 345, 703, 751, 871, 910
Hpy188I TCNGA 6 cut(s) 98, 109, 253, 372, 548, 568
Hpy188III TCNNGA 5 cut(s) 521, 668, 864, 970, 1012
Hpy8I GTNNAC 6 cut(s) 300, 345, 703, 751, 871, 910
Hpy99I CGWCG 3 cut(s) 62, 707, 752
HpyAV CCTTC 5 cut(s) 184, 280, 443, 553, 938
HpyCH4III ACNGT 2 cut(s) 485, 707
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 8 cut(s) 538, 615, 714, 803, 917, 926, 1046, 1055
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 44, 159, 185, 524, 894, 923, 1002, 1052
HpyF3I CTNAG 3 cut(s) 116, 369, 567
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 951
Hsp92II CATG 7 cut(s) 127, 797, 888, 904, 917, 1036, 1053
HspAI GCGC 3 cut(s) 216, 588, 594
Kzo9I GATC 5 cut(s) 48, 272, 472, 488, 555
LmnI GCTCC 5 cut(s) 130, 330, 362, 383, 515
Lsp1109I GCAGC 9 cut(s) 41, 77, 219, 352, 539, 583, 586, 599, 667
LweI GCATC 3 cut(s) 77, 403, 1064
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 4 cut(s) 119, 457, 479, 878
MalI GATC 5 cut(s) 50, 274, 474, 490, 557
MboI GATC 5 cut(s) 48, 272, 472, 488, 555
MboII GAAGA 6 cut(s) 214, 350, 458, 791, 794, 1039
MflI RGATCY 2 cut(s) 488, 555
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 1 cut(s) 785
MlyI GAGTC 6 cut(s) 92, 104, 422, 454, 708, 746
MmeI TCCRAC 3 cut(s) 111, 132, 676
MnlI CCTC 6 cut(s) 121, 158, 179, 214, 517, 670
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 894, 1064
MspR9I CCNGG 3 cut(s) 41, 770, 1064
MvaI CCWGG 2 cut(s) 41, 770
MvnI CGCG 3 cut(s) 62, 218, 1073
MwoI GCNNNNNNNGC 9 cut(s) 35, 44, 159, 185, 524, 894, 923, 1002, 1052
NciI CCSGG 1 cut(s) 1064
NcoI CCATGG 1 cut(s) 900
NdeII GATC 5 cut(s) 48, 272, 472, 488, 555
NlaIII CATG 7 cut(s) 127, 797, 888, 904, 917, 1036, 1053
NlaIV GGNNCC 2 cut(s) 892, 898
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 119, 457, 479, 878
NspI RCATGY 4 cut(s) 797, 888, 1036, 1053
PaeI GCATGC 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 521
PasI CCCWGGG 1 cut(s) 769
PceI AGGCCT 1 cut(s) 542
PciI ACATGT 2 cut(s) 1032, 1049
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 755
PleI GAGTC 6 cut(s) 91, 104, 422, 454, 707, 746
PpsI GAGTC 6 cut(s) 91, 104, 422, 454, 707, 746
PscI ACATGT 2 cut(s) 1032, 1049
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 39, 768
PspFI CCCAGC 2 cut(s) 333, 990
PspGI CCWGG 2 cut(s) 39, 768
PspN4I GGNNCC 2 cut(s) 892, 898
PspPI GGNCC 2 cut(s) 37, 896
PstI CTGCAG 1 cut(s) 617
PsuI RGATCY 2 cut(s) 488, 555
PsyI GACNNNGTC 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 8 cut(s) 197, 209, 299, 647, 656, 935, 959, 1061
RsaNI GTAC 8 cut(s) 196, 208, 298, 646, 655, 934, 958, 1060
RseI CAYNNNNRTG 1 cut(s) 905
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 2 cut(s) 701, 749
SaqAI TTAA 1 cut(s) 468
Sau3AI GATC 5 cut(s) 48, 272, 472, 488, 555
Sau96I GGNCC 2 cut(s) 37, 896
SchI GAGTC 6 cut(s) 92, 104, 422, 454, 708, 746
ScrFI CCNGG 3 cut(s) 41, 770, 1064
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 3 cut(s) 77, 403, 1064
SfcI CTRYAG 1 cut(s) 613
SfiI GGCCNNNNNGGCC 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SphI GCATGC 1 cut(s) 797
Sse9I AATT 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 542
SspI AATATT 1 cut(s) 719
SstI GAGCTC 1 cut(s) 520
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 39, 768, 1062
StyI CCWWGG 2 cut(s) 33, 900
TaaI ACNGT 2 cut(s) 485, 707
TaiI ACGT 1 cut(s) 168
TaqI TCGA 7 cut(s) 71, 78, 271, 431, 522, 702, 750
TasI AATT 1 cut(s) 785
TatI WGTACW 2 cut(s) 645, 654
TauI GCSGC 7 cut(s) 32, 47, 65, 162, 814, 891, 951
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 6 cut(s) 415, 488, 517, 622, 826, 883
TseFI GTSAC 4 cut(s) 119, 457, 479, 878
TseI GCWGC 9 cut(s) 54, 65, 232, 365, 527, 571, 574, 612, 680
Tsp45I GTSAC 4 cut(s) 119, 457, 479, 878
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 678, 951
TspRI CASTG 6 cut(s) 415, 488, 517, 622, 826, 883
Tth111I GACNNNGTC 1 cut(s) 755
XceI RCATGY 4 cut(s) 797, 888, 1036, 1053
XhoI CTCGAG 1 cut(s) 521
XmiI GTMKAC 2 cut(s) 702, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.