Rmu_sc0004439.1_g000010

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004439.1
OG0011119
Physical Location & Seq
Reverse (-)
56227 .. 58282
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004439.1_g000010.1.cds

Sequence Viewer

Length: 1074 bp
atggctcctcctcgtttgacgctggtcgtgtccctcttggccgtggctctgagcacctgcgccgcttcgagcttcgatgagtccaaccccatccggttggtccccgacggcctccgtgaactggaggaccaggtcgtccaagtcctcggccaggtttgccacgtccgctcctttgctcggtttgcttacaggtacgagaagaggtacgagagcgtggaggagatgaggcggcgattcgagattttcgccgagaacaagaagctgattcgatccaccaacaggaagggcttgtcttacaagctcggtgttaaccgctttgctgattggacttgggaagagttccagaggcataggttgggggctgctcagaactgctctgccaccactaagggcaaccacaagctcaccaacgctgttccacctctcacgaaaaactggagagacgaaggcatagtcaccccagttaaagaccaaggccactgtggatcttgctggacattcagtaccactggagctcttgaggcagcttatgcacaagcatttggcaagcaaatctctctgtccgaacagcagcttgtggattgtgctggagctttcaacaactttgggtgcagcggtgggttgccatctcaagcctttgagtacatcaaatacaacggcggtcttgacactgagcaagcatatccttacaccgcagtagatggtgcctgtaaattttcatctgaaaatgtcggtgtccgagtcctcgactctgtcaatattaccctgaatgatgaggaagaattgaagcacgcagttgcatttgttaggccagtcagcgtagcattccaggtggtccaagatttccgattgtacaagtcgggagtttacaccagtgagacatgcggcaacactcccatggatgtgaaccatgctgttcttgctgttggatatggagtggaaaacggtgtcccatactggcttattaagaactcctgggggcaaagctggggtgacaatggctacttcaagatggagtatgggaagaacatgtgtggtgttgcaacttgtgcttcctacccggttgtcgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

357

Amino Acids

39.59

Weight (kDa)

6.61

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 704
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 8 cut(s) 63, 166, 229, 313, 615, 660, 693, 885
AclWI GGATC 2 cut(s) 264, 493
AcoI YGGCCR 2 cut(s) 39, 148
AcsI RAATTY 1 cut(s) 713
AfaI GTAC 5 cut(s) 194, 206, 505, 644, 854
AfiI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 3 cut(s) 598, 787, 1009
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 4 cut(s) 129, 150, 828, 974
AluBI AGCT 9 cut(s) 72, 262, 301, 403, 515, 527, 574, 593, 987
AluI AGCT 9 cut(s) 72, 262, 301, 403, 515, 527, 574, 593, 987
Alw21I GWGCWC 2 cut(s) 56, 517
Alw26I GTCTC 2 cut(s) 435, 872
AlwI GGATC 2 cut(s) 264, 493
AoxI GGCC 5 cut(s) 39, 109, 148, 475, 809
ApeKI GCWGC 4 cut(s) 362, 524, 571, 612
ApoI RAATTY 1 cut(s) 713
ArsI GACNNNNNNTTYG 2 cut(s) 438, 470
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 100, 127, 835
AsuC2I CCSGG 1 cut(s) 1061
AsuHPI GGTGA 3 cut(s) 397, 448, 1004
AvaII GGWCC 3 cut(s) 100, 127, 835
BanI GGYRCC 1 cut(s) 704
BanII GRGCYC 1 cut(s) 517
Bbv12I GWGCWC 2 cut(s) 56, 517
BbvI GCAGC 4 cut(s) 349, 536, 583, 624
BccI CCATC 4 cut(s) 98, 634, 695, 1006
BceAI ACGGC 3 cut(s) 26, 124, 673
BciT130I CCWGG 4 cut(s) 131, 152, 830, 976
BcnI CCSGG 1 cut(s) 1061
BcoDI GTCTC 2 cut(s) 435, 872
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 7 cut(s) 63, 230, 363, 525, 572, 613, 886
BlsI GCNGC 7 cut(s) 64, 231, 364, 526, 573, 614, 887
Bme1390I CCNGG 5 cut(s) 131, 152, 830, 976, 1061
Bme18I GGWCC 3 cut(s) 100, 127, 835
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 100, 127, 835
BmiI GGNNCC 3 cut(s) 6, 102, 706
BmrFI CCNGG 5 cut(s) 131, 152, 830, 976, 1061
BmrI ACTGGG 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 455
BoxI GACNNNNGTC 1 cut(s) 23
BpmI CTGGAG 4 cut(s) 143, 457, 531, 609
BpuEI CTTGAG 2 cut(s) 539, 615
BpuMI CCSGG 1 cut(s) 1061
BsaJI CCNNGG 5 cut(s) 42, 145, 472, 897, 975
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
Bse1I ACTGG 7 cut(s) 126, 440, 461, 514, 812, 873, 962
BseBI CCWGG 4 cut(s) 131, 152, 830, 976
BseDI CCNNGG 5 cut(s) 42, 145, 472, 897, 975
BseGI GGATG 2 cut(s) 90, 907
BseLI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
BseMII CTCAG 3 cut(s) 41, 380, 663
BseNI ACTGG 7 cut(s) 126, 440, 461, 514, 812, 873, 962
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 4 cut(s) 349, 536, 583, 624
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 631
BshFI GGCC 5 cut(s) 41, 111, 150, 477, 811
BshNI GGYRCC 1 cut(s) 704
BsiHKAI GWGCWC 2 cut(s) 56, 517
BsiSI CCGG 2 cut(s) 94, 1061
BslFI GGGAC 3 cut(s) 16, 86, 935
BslI CCNNNNNNNGG 4 cut(s) 121, 151, 177, 279
BsmAI GTCTC 2 cut(s) 435, 872
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 3 cut(s) 16, 86, 935
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 5 cut(s) 41, 111, 150, 477, 811
Bsp1286I GDGCHC 2 cut(s) 56, 517
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 2 cut(s) 269, 485
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 8 cut(s) 63, 166, 229, 313, 615, 660, 693, 885
BspANI GGCC 5 cut(s) 41, 111, 150, 477, 811
BspCNI CTCAG 3 cut(s) 42, 379, 664
BspLI GGNNCC 3 cut(s) 6, 102, 706
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 264, 493
BspT107I GGYRCC 1 cut(s) 704
BsrBI CCGCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 7 cut(s) 126, 440, 461, 514, 812, 873, 962
BssECI CCNNGG 5 cut(s) 42, 145, 472, 897, 975
BssMI GATC 2 cut(s) 269, 485
BssT1I CCWWGG 2 cut(s) 472, 897
Bst2UI CCWGG 4 cut(s) 131, 152, 830, 976
Bst4CI ACNGT 2 cut(s) 482, 947
Bst6I CTCTTC 2 cut(s) 194, 330
BstAPI GCANNNNNTGC 2 cut(s) 530, 1049
BstAUI TGTACA 1 cut(s) 852
BstC8I GCNNGC 3 cut(s) 548, 678, 792
BstDEI CTNAG 4 cut(s) 50, 366, 387, 672
BstDSI CCRYGG 2 cut(s) 42, 897
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 90, 907
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 272, 488
BstMAI GTCTC 2 cut(s) 435, 872
BstMBI GATC 2 cut(s) 269, 485
BstMWI GCNNNNNNNGC 7 cut(s) 156, 165, 182, 521, 530, 920, 1049
BstNI CCWGG 4 cut(s) 131, 152, 830, 976
BstNSI RCATGY 2 cut(s) 885, 1033
BstPAI GACNNNNGTC 1 cut(s) 23
BstSCI CCNGG 5 cut(s) 129, 150, 828, 974, 1059
BstV1I GCAGC 4 cut(s) 349, 536, 583, 624
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 5 cut(s) 41, 111, 150, 477, 811
BtgI CCRYGG 2 cut(s) 42, 897
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 90, 907
BtsIMutI CAGTG 4 cut(s) 478, 507, 669, 880
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 548, 678, 792
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 100, 127, 835
CseI GACGC 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 129
Csp6I GTAC 5 cut(s) 193, 205, 504, 643, 853
CviAII CATG 4 cut(s) 882, 898, 911, 1030
CviQI GTAC 5 cut(s) 193, 205, 504, 643, 853
DdeI CTNAG 4 cut(s) 50, 366, 387, 672
DpnI GATC 2 cut(s) 271, 487
DpnII GATC 2 cut(s) 269, 485
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 39, 148
Eam1104I CTCTTC 2 cut(s) 194, 330
EarI CTCTTC 2 cut(s) 194, 330
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 2 cut(s) 472, 897
Eco24I GRGCYC 1 cut(s) 517
Eco47I GGWCC 3 cut(s) 100, 127, 835
Eco53kI GAGCTC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 515
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRII CCWGG 4 cut(s) 129, 150, 828, 974
EcoT14I CCWWGG 2 cut(s) 472, 897
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 2 cut(s) 472, 897
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 4 cut(s) 885, 901, 914, 1033
FaqI GGGAC 3 cut(s) 16, 86, 935
FatI CATG 4 cut(s) 881, 897, 910, 1029
Fnu4HI GCNGC 7 cut(s) 63, 230, 363, 525, 572, 613, 886
FokI GGATG 2 cut(s) 77, 914
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 7 cut(s) 63, 230, 363, 525, 572, 613, 886
GlaI GCGC 1 cut(s) 61
GluI GCNGC 7 cut(s) 63, 230, 363, 525, 572, 613, 886
GsaI CCCAGC 1 cut(s) 991
GsuI CTGGAG 4 cut(s) 143, 457, 531, 609
HaeIII GGCC 5 cut(s) 41, 111, 150, 477, 811
HapII CCGG 2 cut(s) 94, 1061
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 885, 901, 914, 1033
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 80, 234, 265, 741, 749
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 2 cut(s) 94, 1061
HphI GGTGA 3 cut(s) 397, 448, 1004
Hpy166II GTNNAC 4 cut(s) 119, 310, 868, 907
Hpy188I TCNGA 6 cut(s) 51, 369, 565, 724, 740, 848
Hpy188III TCNNGA 7 cut(s) 238, 343, 427, 518, 665, 861, 1009
Hpy8I GTNNAC 4 cut(s) 119, 310, 868, 907
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 277, 440
HpyCH4III ACNGT 2 cut(s) 482, 947
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 533, 612, 800, 1043
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 165, 182, 521, 530, 920, 1049
HpyF3I CTNAG 4 cut(s) 50, 366, 387, 672
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 4 cut(s) 885, 901, 914, 1033
HspAI GCGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 269, 485
LmnI GCTCC 4 cut(s) 10, 173, 512, 590
Lsp1109I GCAGC 4 cut(s) 349, 536, 583, 624
MabI ACCWGGT 1 cut(s) 129
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 454, 992
MalI GATC 2 cut(s) 271, 487
MbiI CCGCTC 1 cut(s) 168
MboI GATC 2 cut(s) 269, 485
MboII GAAGA 4 cut(s) 211, 347, 791, 1036
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 56, 517
MluCI AATT 2 cut(s) 713, 782
MlyI GAGTC 3 cut(s) 89, 743, 750
MmeI TCCRAC 2 cut(s) 108, 907
MseI TTAA 4 cut(s) 309, 465, 966, 1072
MslI CAYNNNNRTG 2 cut(s) 896, 902
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 2 cut(s) 94, 1061
MspR9I CCNGG 5 cut(s) 131, 152, 830, 976, 1061
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 4 cut(s) 131, 152, 830, 976
MwoI GCNNNNNNNGC 7 cut(s) 156, 165, 182, 521, 530, 920, 1049
NciI CCSGG 1 cut(s) 1061
NcoI CCATGG 1 cut(s) 897
NdeII GATC 2 cut(s) 269, 485
NlaIII CATG 4 cut(s) 885, 901, 914, 1033
NlaIV GGNNCC 3 cut(s) 6, 102, 706
NmeAIII GCCGAG 2 cut(s) 126, 274
NmuCI GTSAC 2 cut(s) 454, 992
NspI RCATGY 2 cut(s) 885, 1033
PaqCI CACCTGC 1 cut(s) 65
PciI ACATGT 1 cut(s) 1029
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 2 cut(s) 234, 265
PflFI GACNNNGTC 2 cut(s) 131, 752
PkrI GCNGC 7 cut(s) 64, 231, 364, 526, 573, 614, 887
PleI GAGTC 3 cut(s) 88, 743, 749
PpsI GAGTC 3 cut(s) 88, 743, 749
PscI ACATGT 1 cut(s) 1029
PshAI GACNNNNGTC 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 517
Psp6I CCWGG 4 cut(s) 129, 150, 828, 974
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 4 cut(s) 129, 150, 828, 974
PspN4I GGNNCC 3 cut(s) 6, 102, 706
PspPI GGNCC 3 cut(s) 100, 127, 835
PsuI RGATCY 1 cut(s) 485
PsyI GACNNNGTC 2 cut(s) 131, 752
RsaI GTAC 5 cut(s) 194, 206, 505, 644, 854
RsaNI GTAC 5 cut(s) 193, 205, 504, 643, 853
RseI CAYNNNNRTG 2 cut(s) 896, 902
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 4 cut(s) 309, 465, 966, 1072
SatI GCNGC 7 cut(s) 63, 230, 363, 525, 572, 613, 886
Sau3AI GATC 2 cut(s) 269, 485
Sau96I GGNCC 3 cut(s) 100, 127, 835
SchI GAGTC 3 cut(s) 89, 743, 750
ScrFI CCNGG 5 cut(s) 131, 152, 830, 976, 1061
SduI GDGCHC 2 cut(s) 56, 517
SexAI ACCWGGT 1 cut(s) 129
SinI GGWCC 3 cut(s) 100, 127, 835
SmiMI CAYNNNNRTG 2 cut(s) 896, 902
SmlI CTYRAG 2 cut(s) 518, 630
SmoI CTYRAG 2 cut(s) 518, 630
Sse9I AATT 2 cut(s) 713, 782
SsiI CCGC 8 cut(s) 63, 166, 229, 313, 615, 660, 693, 885
SspI AATATT 1 cut(s) 760
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 5 cut(s) 129, 150, 828, 974, 1059
StyI CCWWGG 2 cut(s) 472, 897
TaaI ACNGT 2 cut(s) 482, 947
TaiI ACGT 1 cut(s) 165
TaqI TCGA 5 cut(s) 68, 75, 237, 268, 747
TasI AATT 2 cut(s) 713, 782
TatI WGTACW 2 cut(s) 642, 852
TauI GCSGC 3 cut(s) 65, 232, 888
TfiI GAWTC 2 cut(s) 234, 265
Tru1I TTAA 4 cut(s) 309, 465, 966, 1072
Tru9I TTAA 4 cut(s) 309, 465, 966, 1072
TscAI CASTG 4 cut(s) 485, 514, 676, 880
TseFI GTSAC 2 cut(s) 454, 992
TseI GCWGC 4 cut(s) 362, 524, 571, 612
Tsp45I GTSAC 2 cut(s) 454, 992
TspDTI ATGAA 1 cut(s) 708
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 4 cut(s) 485, 514, 676, 880
Tth111I GACNNNGTC 2 cut(s) 131, 752
VpaK11BI GGWCC 3 cut(s) 100, 127, 835
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 713
XceI RCATGY 2 cut(s) 885, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.