pycom02g07310

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011119
Physical Location & Seq
Reverse (-)
5093241 .. 5095516
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07310.5

Sequence Viewer

Length: 1077 bp
ATGGCTCGCCTGATGCTGTTCTTGTCCGCTGCCTTGTTCCTGGCGGCGATCAGCTGCGGGGTGGCAGCGTCGACCTTCGATGAGTCCAACCCAATCCGATTGGTGTCCGACGCTCTCCGTGACATGGAGGAGCAAGTCGTCCAAGTCCTCGGCAGCTCCCGCCACGTCCTCTCGTTCGCCCGTTTCGCTCACAGGTTCGGGAAGAAGTACGAGAGCGCGGAGGAGATGAAGCTGCGATATGCGATTTTCTTGGAGAATAAGAAGCTGATTCGATCCACCAACAGGAAGGGCTTGTCTTACACTCTTGCTGTTAATCGGTTTGCTGATTGGAGCTGGGAAGAGTTCGCGAGGCACAGGTTGGGAGCTGCTCAGAACTGCTCTGCCACCACAAAGGGCAACCACAAGCTCACTGGTGCCGTTCTCCCTGAGTCGAAAAACTGGAAAGAAGAAGGCATAGTGACCCCGGTTAAAGATCAAGGTCACTGTGGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCAGCGTATGTGCAGGCATTTGGAAAGCAAATCTCCCTCTCCGAGCAGCAGCTTGTGGATTGTGCCGGAGATTTCAACAACAACGGCTGCCATGGTGGGCTGCCATCTCAAGCATTTGAGTACATTAAGTATAACGGGGGTCTTGACACTGAGGCTGCGTATCCCTACGTTGGAGTTGACGGTGCTTGCAAATTTTCGTCGGAAAATGTTGGCGTCCAAGTCGTCGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCCGTTGCATTTGTGCGGCCGGTCAGCGTGGCGTTTCAGGTCGTCCAAAGTTTCCGGTTTTACAAGTCGGGAGTTTACACCAGTGACACATGCGGCAGCAGTTCCATGGATGTGAACCATGCGGTTCTTGCGGTTGGGTACGGAGTGGAAGACGGCGTCCCCTTCTGGCTCATCAAGAACTCTTGGGGACAAAGCTGGGGGGACAATGGCTACTTCAAGATGGAGTACGGGAAGAACATGTGTGGTGTTGCAACATGTGCATCGTACCCGGTTGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

359

Amino Acids

39.14

Weight (kDa)

6.26

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 2 cut(s) 71, 750
AccII CGCG 3 cut(s) 218, 347, 1073
AciI CCGC 9 cut(s) 27, 44, 57, 160, 218, 811, 888, 917, 926
AclWI GGATC 2 cut(s) 267, 496
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 798
AcyI GRCGYC 2 cut(s) 738, 951
AfaI GTAC 5 cut(s) 209, 647, 935, 1022, 1061
AfiI CCNNNNNNNGG 3 cut(s) 124, 282, 695
AflIII ACRYGT 2 cut(s) 1032, 1049
AgsI TTSAA 3 cut(s) 601, 790, 1012
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 39, 768
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 2 cut(s) 267, 496
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 812
ApoI RAATTY 1 cut(s) 716
AspLEI GCGC 1 cut(s) 218
AsuC2I CCSGG 2 cut(s) 464, 1064
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 521
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 2 cut(s) 637, 1009
BceAI ACGGC 4 cut(s) 401, 625, 782, 964
BciT130I CCWGG 2 cut(s) 41, 770
BciVI GTATCC 1 cut(s) 696
BcnI CCSGG 2 cut(s) 464, 1064
BfuI GTATCC 1 cut(s) 696
Bme1390I CCNGG 4 cut(s) 41, 464, 770, 1064
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 4 cut(s) 41, 464, 770, 1064
BmsI GCATC 2 cut(s) 3, 1064
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 2 cut(s) 464, 1064
BsaHI GRCGYC 2 cut(s) 738, 951
BsaJI CCNNGG 6 cut(s) 148, 462, 616, 768, 769, 900
BsaWI WCCGGW 1 cut(s) 849
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 282, 695
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 4 cut(s) 415, 443, 517, 876
BseBI CCWGG 2 cut(s) 41, 770
BseDI CCNNGG 6 cut(s) 148, 462, 616, 768, 769, 900
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 3 cut(s) 124, 282, 695
BseMII CTCAG 3 cut(s) 383, 417, 666
BseNI ACTGG 4 cut(s) 415, 443, 517, 876
BseRI GAGGAG 2 cut(s) 143, 236
BseX3I CGGCCG 1 cut(s) 812
BseYI CCCAGC 2 cut(s) 333, 990
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 3 cut(s) 218, 347, 1073
Bsh1285I CGRYCG 1 cut(s) 815
BshFI GGCC 1 cut(s) 814
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 815
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 5 cut(s) 464, 591, 815, 850, 1064
BslFI GGGAC 3 cut(s) 938, 996, 1010
BslI CCNNNNNNNGG 3 cut(s) 124, 282, 695
BsmFI GGGAC 3 cut(s) 938, 996, 1010
BsnI GGCC 1 cut(s) 814
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 4 cut(s) 48, 272, 472, 488
Bsp19I CCATGG 2 cut(s) 616, 900
Bsp68I TCGCGA 1 cut(s) 347
BspACI CCGC 9 cut(s) 27, 44, 57, 160, 218, 811, 888, 917, 926
BspANI GGCC 1 cut(s) 814
BspCNI CTCAG 3 cut(s) 382, 418, 667
BspFNI CGCG 3 cut(s) 218, 347, 1073
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 2 cut(s) 267, 496
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 4 cut(s) 415, 443, 517, 876
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 6 cut(s) 148, 462, 616, 768, 769, 900
BssMI GATC 4 cut(s) 48, 272, 472, 488
BssNI GRCGYC 2 cut(s) 738, 951
BssT1I CCWWGG 2 cut(s) 616, 900
Bst2UI CCWGG 2 cut(s) 41, 770
Bst4CI ACNGT 2 cut(s) 485, 707
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 738, 951
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstC8I GCNNGC 4 cut(s) 7, 540, 712, 795
BstDEI CTNAG 3 cut(s) 369, 426, 675
BstDSI CCRYGG 2 cut(s) 616, 900
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 3 cut(s) 218, 347, 1073
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 4 cut(s) 51, 275, 475, 491
BstMBI GATC 4 cut(s) 48, 272, 472, 488
BstMCI CGRYCG 1 cut(s) 815
BstMWI GCNNNNNNNGC 5 cut(s) 159, 185, 524, 923, 1052
BstNI CCWGG 2 cut(s) 41, 770
BstNSI RCATGY 4 cut(s) 797, 888, 1036, 1053
BstSCI CCNGG 4 cut(s) 39, 462, 768, 1062
BstUI CGCG 3 cut(s) 218, 347, 1073
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BstZI CGGCCG 1 cut(s) 812
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 1 cut(s) 814
BtgI CCRYGG 2 cut(s) 616, 900
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 910
BtsIMutI CAGTG 5 cut(s) 408, 481, 510, 672, 883
BtuMI TCGCGA 1 cut(s) 347
Cac8I GCNNGC 4 cut(s) 7, 540, 712, 795
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 814
CseI GACGC 4 cut(s) 57, 119, 727, 940
Csp6I GTAC 5 cut(s) 208, 646, 934, 1021, 1060
CviAII CATG 8 cut(s) 124, 617, 794, 885, 901, 914, 1033, 1050
CviQI GTAC 5 cut(s) 208, 646, 934, 1021, 1060
DdeI CTNAG 3 cut(s) 369, 426, 675
DpnI GATC 4 cut(s) 50, 274, 474, 490
DpnII GATC 4 cut(s) 48, 272, 472, 488
EaeI YGGCCR 1 cut(s) 812
EagI CGGCCG 1 cut(s) 812
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 518
EclXI CGGCCG 1 cut(s) 812
Eco130I CCWWGG 2 cut(s) 616, 900
Eco24I GRGCYC 1 cut(s) 520
Eco52I CGGCCG 1 cut(s) 812
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 39, 768
EcoT14I CCWWGG 2 cut(s) 616, 900
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 616, 900
FaeI CATG 8 cut(s) 127, 620, 797, 888, 904, 917, 1036, 1053
FaqI GGGAC 3 cut(s) 938, 996, 1010
FatI CATG 8 cut(s) 123, 616, 793, 884, 900, 913, 1032, 1049
FauI CCCGC 2 cut(s) 50, 167
FblI GTMKAC 2 cut(s) 71, 750
FokI GGATG 1 cut(s) 917
FriOI GRGCYC 1 cut(s) 520
GlaI GCGC 1 cut(s) 217
GsaI CCCAGC 2 cut(s) 337, 994
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 814
HapII CCGG 5 cut(s) 464, 591, 815, 850, 1064
HgaI GACGC 4 cut(s) 57, 119, 727, 940
HhaI GCGC 1 cut(s) 218
Hin1I GRCGYC 2 cut(s) 738, 951
Hin1II CATG 8 cut(s) 127, 620, 797, 888, 904, 917, 1036, 1053
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 3 cut(s) 72, 703, 751
HindII GTYRAC 3 cut(s) 72, 703, 751
HinfI GANTC 4 cut(s) 83, 268, 428, 752
HpaII CCGG 5 cut(s) 464, 591, 815, 850, 1064
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 5 cut(s) 72, 703, 751, 871, 910
Hpy188I TCNGA 5 cut(s) 98, 109, 372, 568, 727
Hpy188III TCNNGA 7 cut(s) 199, 346, 521, 668, 864, 970, 1012
Hpy8I GTNNAC 5 cut(s) 72, 703, 751, 871, 910
Hpy99I CGWCG 4 cut(s) 73, 113, 727, 752
HpyAV CCTTC 4 cut(s) 85, 280, 443, 967
HpyCH4III ACNGT 2 cut(s) 485, 707
HpyCH4IV ACGT 2 cut(s) 165, 693
HpyCH4V TGCA 5 cut(s) 538, 714, 803, 1046, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 185, 524, 923, 1052
HpyF3I CTNAG 3 cut(s) 369, 426, 675
HpySE526I ACGT 2 cut(s) 165, 693
Hsp92I GRCGYC 2 cut(s) 738, 951
Hsp92II CATG 8 cut(s) 127, 620, 797, 888, 904, 917, 1036, 1053
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 4 cut(s) 48, 272, 472, 488
LmnI GCTCC 5 cut(s) 130, 161, 330, 362, 515
LweI GCATC 2 cut(s) 3, 1064
MaeII ACGT 2 cut(s) 165, 693
MaeIII GTNAC 4 cut(s) 119, 457, 479, 878
MalI GATC 4 cut(s) 50, 274, 474, 490
MboI GATC 4 cut(s) 48, 272, 472, 488
MboII GAAGA 7 cut(s) 214, 350, 458, 791, 794, 956, 1039
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 716, 785
MlyI GAGTC 3 cut(s) 92, 437, 746
MmeI TCCRAC 4 cut(s) 111, 132, 676, 705
MnlI CCTC 8 cut(s) 121, 158, 179, 214, 342, 517, 572, 670
MseI TTAA 3 cut(s) 312, 468, 651
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 2 cut(s) 29, 54
MspI CCGG 5 cut(s) 464, 591, 815, 850, 1064
MspR9I CCNGG 4 cut(s) 41, 464, 770, 1064
MvaI CCWGG 2 cut(s) 41, 770
MvnI CGCG 3 cut(s) 218, 347, 1073
MwoI GCNNNNNNNGC 5 cut(s) 159, 185, 524, 923, 1052
NciI CCSGG 2 cut(s) 464, 1064
NcoI CCATGG 2 cut(s) 616, 900
NdeII GATC 4 cut(s) 48, 272, 472, 488
NlaIII CATG 8 cut(s) 127, 620, 797, 888, 904, 917, 1036, 1053
NlaIV GGNNCC 1 cut(s) 415
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 119, 457, 479, 878
NruI TCGCGA 1 cut(s) 347
NspI RCATGY 4 cut(s) 797, 888, 1036, 1053
PaeI GCATGC 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 521
PasI CCCWGGG 1 cut(s) 769
PciI ACATGT 2 cut(s) 1032, 1049
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 2 cut(s) 755, 950
PleI GAGTC 3 cut(s) 91, 436, 746
PpsI GAGTC 3 cut(s) 91, 436, 746
PscI ACATGT 2 cut(s) 1032, 1049
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 39, 768
PspFI CCCAGC 2 cut(s) 333, 990
PspGI CCWGG 2 cut(s) 39, 768
PspN4I GGNNCC 1 cut(s) 415
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 2 cut(s) 755, 950
PvuII CAGCTG 1 cut(s) 54
RruI TCGCGA 1 cut(s) 347
RsaI GTAC 5 cut(s) 209, 647, 935, 1022, 1061
RsaNI GTAC 5 cut(s) 208, 646, 934, 1021, 1060
RseI CAYNNNNRTG 1 cut(s) 905
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 2 cut(s) 70, 749
SaqAI TTAA 3 cut(s) 312, 468, 651
Sau3AI GATC 4 cut(s) 48, 272, 472, 488
SchI GAGTC 3 cut(s) 92, 437, 746
ScrFI CCNGG 4 cut(s) 41, 464, 770, 1064
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 2 cut(s) 3, 1064
Sfr274I CTCGAG 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 521, 633
SmoI CTYRAG 2 cut(s) 521, 633
SphI GCATGC 1 cut(s) 797
Sse9I AATT 2 cut(s) 716, 785
SsiI CCGC 9 cut(s) 27, 44, 57, 160, 218, 811, 888, 917, 926
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 4 cut(s) 39, 462, 768, 1062
StyI CCWWGG 2 cut(s) 616, 900
TaaI ACNGT 2 cut(s) 485, 707
TaiI ACGT 2 cut(s) 168, 696
TaqI TCGA 6 cut(s) 71, 78, 271, 431, 522, 750
TasI AATT 2 cut(s) 716, 785
TatI WGTACW 1 cut(s) 645
TauI GCSGC 3 cut(s) 47, 814, 891
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 312, 468, 651
Tru9I TTAA 3 cut(s) 312, 468, 651
TscAI CASTG 5 cut(s) 415, 488, 517, 679, 883
TseFI GTSAC 4 cut(s) 119, 457, 479, 878
Tsp45I GTSAC 4 cut(s) 119, 457, 479, 878
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 107, 951
TspRI CASTG 5 cut(s) 415, 488, 517, 679, 883
Tth111I GACNNNGTC 2 cut(s) 755, 950
XapI RAATTY 1 cut(s) 716
XceI RCATGY 4 cut(s) 797, 888, 1036, 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 521
XmiI GTMKAC 2 cut(s) 71, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.