Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011119

Physical Location & Seq

Genomic Coordinates Forward (+)

24279660 .. 24282482

Gene Structure 2823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCTGCGAAAACAATCCTATCATCAGTAGTTTTGGTGGTTCTCGTCGCCGCATCAGCAGCGGCTAATATCGGATTCGATGAGTCAAACCCGATCCGAATGGTCTCCGATGGTCTCCGGGAGGTAGAAGAATCTGTTTCCCAGATCTTAGGTCAATCTCGTCACGTTCTCTCTTTCGCTCGCTTCACTCACCGATATGGTAAAAAGTATCAGAACGTGGAGGAGATGAAGCTTCGATTCTCGATTTTCAAGGAGAATCTTGATTTGATCAGATCCACCAACAAGAAAGGCTTATCTTACAAACTCGGTGTTAATCAATTTGCTGATTTGACATGGCAAGAGTTTCAAAGGACCAAGCTTGGTGCTGCTCAGAACTGCTCTGCCACTTTAAAGGGCAGCCACAAGGTCACAGAAGCAGCTCTTCCTGAAACAAAAGACTGGAGAGAAGATGGTATCGTTAGTCCGGTCAAAGATCAGGGAGGTTGTGGATCTTGCTGGACATTCAGCACAACTGGAGCTCTTGAGGCAGCTTACCATCAGGCATTTGGAAAAGGAATTTCTCTCTCTGAGCAACAGCTTGTGGATTGTGCTGGAGCTTTCAATAACTATGGTTGCAATGGTGGCCTTCCTTCTCAAGCCTTTGAATACATCAAATCCAACGGTGGCCTCGACACAGAGAAAGCTTATCCTTATACCGGTAAAGATGAAACCTGCAAATTTTCAGCTGAAAACGTTGGTGTACAAGTCCTCAACTCAGTCAACATTACTCTGGGTGCTGAAGATGAACTGAAGCATGCGGTTGGATTGGTACGGCCAGTAAGCATAGCATTTGAGGTTATACACTCGTTCCGGCTTTACAAGAGTGGAGTTTACACTGATAGTCACTGTGGAAGTACTCCAATGGATGTGAACCACGCGGTTTTGGCCGTTGGTTATGGAGTTGAAGACGGTGTACCATATTGGCTTATTAAGAACTCATGGGGAGCGGATTGGGGCGACAAAGGTTACTTCAAGATGGAGATGGGGAAGAACATGTGTGGTATTGCTACATGTGCATCATACCCCGTTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

358

Amino Acids

38.96

Weight (kDa)

6.26

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	59 - 115	2.5e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	141 - 356	2.5e-80	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca	FvH4_1g08760
malus_domestica	MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica	Prupe.7G198500_v2.0.a1
pyrus_communis	pycom02g07310 pycom15g19350
rosa_chinensis	RchiOBHm_Chr2g0095151
rosa_laevigata	RLG00000016536
rosa_multiflora	Rmu_sc0004439.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146620
rosa_samantha	Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana	Rw2G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	986
AccII	CGCG	1 cut(s)	917
AciI	CCGC	5 cut(s)	51, 62, 797, 917, 986
AclI	AACGTT	1 cut(s)	732
AclWI	GGATC	3 cut(s)	88, 267, 496
AcoI	YGGCCR	2 cut(s)	812, 924
AcsI	RAATTY	2 cut(s)	555, 716
AcuI	CTGAAG	2 cut(s)	798, 809
AfaI	GTAC	4 cut(s)	741, 810, 895, 954
AfiI	CCNNNNNNNGG	2 cut(s)	695, 1069
AflIII	ACRYGT	2 cut(s)	1032, 1049
AgeI	ACCGGT	1 cut(s)	695
AgsI	TTSAA	6 cut(s)	250, 347, 601, 644, 944, 1012
AluBI	AGCT	9 cut(s)	232, 358, 419, 518, 530, 577, 596, 683, 725
AluI	AGCT	9 cut(s)	232, 358, 419, 518, 530, 577, 596, 683, 725
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	109, 119
AlwI	GGATC	3 cut(s)	88, 267, 496
AoxI	GGCC	4 cut(s)	622, 664, 812, 924
ApeKI	GCWGC	5 cut(s)	59, 365, 396, 416, 527
ApoI	RAATTY	2 cut(s)	555, 716
AsiGI	ACCGGT	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	520
BarI	GAAGNNNNNNTAC	2 cut(s)	936, 968
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	5 cut(s)	71, 352, 408, 428, 539
BccI	CCATC	5 cut(s)	104, 443, 543, 1009, 1015
BceAI	ACGGC	2 cut(s)	827, 911
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	109, 119
BfuAI	ACCTGC	1 cut(s)	719
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	7 cut(s)	51, 60, 63, 366, 397, 417, 528
BlsI	GCNGC	7 cut(s)	52, 61, 64, 367, 398, 418, 529
BmcAI	AGTACT	1 cut(s)	895
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	62, 1064
BpiI	GAAGAC	1 cut(s)	951
BpmI	CTGGAG	3 cut(s)	460, 534, 612
BpuEI	CTTGAG	2 cut(s)	542, 618
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	2 cut(s)	109, 119
BsaWI	WCCGGW	2 cut(s)	463, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 1069
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	443, 517, 815
Bse3DI	GCAATG	1 cut(s)	622
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	2 cut(s)	695, 1069
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	3 cut(s)	383, 558, 768
BseNI	ACTGG	3 cut(s)	443, 517, 815
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	5 cut(s)	71, 352, 408, 428, 539
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	4 cut(s)	624, 666, 814, 926
BshTI	ACCGGT	1 cut(s)	695
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	4 cut(s)	118, 464, 696, 850
BslI	CCNNNNNNNGG	2 cut(s)	695, 1069
BsmAI	GTCTC	2 cut(s)	109, 119
BsnI	GGCC	4 cut(s)	624, 666, 814, 926
Bso31I	GGTCTC	2 cut(s)	109, 119
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
BspACI	CCGC	5 cut(s)	51, 62, 797, 917, 986
BspANI	GGCC	4 cut(s)	624, 666, 814, 926
BspCNI	CTCAG	3 cut(s)	382, 559, 767
BspFNI	CGCG	1 cut(s)	917
BspMI	ACCTGC	1 cut(s)	719
BspPI	GGATC	3 cut(s)	88, 267, 496
BspQI	GCTCTTC	1 cut(s)	426
BspTNI	GGTCTC	2 cut(s)	109, 119
BsrBI	CCGCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	739
BsrI	ACTGG	3 cut(s)	443, 517, 815
BssAI	RCCGGY	1 cut(s)	695
BssMI	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
Bst4CI	ACNGT	3 cut(s)	662, 887, 950
Bst6I	CTCTTC	1 cut(s)	426
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	2 cut(s)	181, 795
BstDEI	CTNAG	4 cut(s)	148, 369, 567, 754
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	1 cut(s)	917
BstKTI	GATC	6 cut(s)	96, 147, 270, 275, 475, 491
BstMAI	GTCTC	2 cut(s)	109, 119
BstMBI	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 59, 524, 621, 923, 1052
BstNSI	RCATGY	3 cut(s)	797, 1036, 1053
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	5 cut(s)	71, 352, 408, 428, 539
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	3 cut(s)	144, 272, 488
BstYI	RGATCY	3 cut(s)	144, 272, 488
BsuRI	GGCC	4 cut(s)	624, 666, 814, 926
BtsCI	GGATG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	873, 883
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	2 cut(s)	181, 795
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	740, 809, 894, 953
CspAI	ACCGGT	1 cut(s)	695
CviAII	CATG	5 cut(s)	333, 794, 978, 1033, 1050
CviQI	GTAC	4 cut(s)	740, 809, 894, 953
DdeI	CTNAG	4 cut(s)	148, 369, 567, 754
DpnI	GATC	6 cut(s)	95, 146, 269, 274, 474, 490
DpnII	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
DraI	TTTAAA	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	812, 924
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	2 cut(s)	109, 119
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	798, 809
EcoICRI	GAGCTC	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	520
FaeI	CATG	5 cut(s)	336, 797, 981, 1036, 1053
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 405, 437
FatI	CATG	5 cut(s)	332, 793, 977, 1032, 1049
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	7 cut(s)	51, 60, 63, 366, 397, 417, 528
FokI	GGATG	1 cut(s)	917
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	7 cut(s)	51, 60, 63, 366, 397, 417, 528
GluI	GCNGC	7 cut(s)	51, 60, 63, 366, 397, 417, 528
GsuI	CTGGAG	3 cut(s)	460, 534, 612
HaeIII	GGCC	4 cut(s)	624, 666, 814, 926
HapII	CCGG	4 cut(s)	118, 464, 696, 850
Hin1II	CATG	5 cut(s)	336, 797, 981, 1036, 1053
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	3 cut(s)	230, 356, 681
HinfI	GANTC	5 cut(s)	75, 83, 131, 237, 256
HpaII	CCGG	4 cut(s)	118, 464, 696, 850
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	5 cut(s)	740, 760, 871, 910, 953
Hpy188I	TCNGA	7 cut(s)	74, 98, 109, 213, 272, 372, 568
Hpy188III	TCNNGA	5 cut(s)	241, 260, 425, 521, 1012
Hpy8I	GTNNAC	5 cut(s)	740, 760, 871, 910, 953
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	635, 639
HpyCH4III	ACNGT	3 cut(s)	662, 887, 950
HpyCH4IV	ACGT	3 cut(s)	165, 216, 732
HpyCH4V	TGCA	3 cut(s)	615, 714, 1055
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 59, 524, 621, 923, 1052
HpyF3I	CTNAG	4 cut(s)	148, 369, 567, 754
HpySE526I	ACGT	3 cut(s)	165, 216, 732
Hsp92II	CATG	5 cut(s)	336, 797, 981, 1036, 1053
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	3 cut(s)	515, 593, 983
Lsp1109I	GCAGC	5 cut(s)	71, 352, 408, 428, 539
LweI	GCATC	2 cut(s)	62, 1064
MaeII	ACGT	3 cut(s)	165, 216, 732
MaeIII	GTNAC	4 cut(s)	161, 406, 881, 1004
MalI	GATC	6 cut(s)	95, 146, 269, 274, 474, 490
MbiI	CCGCTC	1 cut(s)	986
MboI	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
MboII	GAAGA	6 cut(s)	140, 413, 458, 791, 956, 1039
MflI	RGATCY	3 cut(s)	144, 272, 488
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	3 cut(s)	317, 555, 716
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	681, 781
MnlI	CCTC	7 cut(s)	115, 214, 473, 517, 677, 758, 826
MseI	TTAA	3 cut(s)	312, 389, 969
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	62, 725
MspI	CCGG	4 cut(s)	118, 464, 696, 850
MspR9I	CCNGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	6 cut(s)	56, 59, 524, 621, 923, 1052
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
NlaIII	CATG	5 cut(s)	336, 797, 981, 1036, 1053
NmuCI	GTSAC	3 cut(s)	161, 406, 881
NspI	RCATGY	3 cut(s)	797, 1036, 1053
PaeI	GCATGC	1 cut(s)	797
PciI	ACATGT	2 cut(s)	1032, 1049
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PfeI	GAWTC	4 cut(s)	75, 131, 237, 256
PfoI	TCCNGGA	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	695
PkrI	GCNGC	7 cut(s)	52, 61, 64, 367, 398, 418, 529
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	2 cut(s)	1032, 1049
Psp124BI	GAGCTC	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	3 cut(s)	144, 272, 488
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	4 cut(s)	741, 810, 895, 954
RsaNI	GTAC	4 cut(s)	740, 809, 894, 953
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	312, 389, 969
SatI	GCNGC	7 cut(s)	51, 60, 63, 366, 397, 417, 528
Sau3AI	GATC	6 cut(s)	93, 144, 267, 272, 472, 488
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	895
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	2 cut(s)	62, 1064
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	521, 633
SmoI	CTYRAG	2 cut(s)	521, 633
SphI	GCATGC	1 cut(s)	797
Sse9I	AATT	3 cut(s)	317, 555, 716
SsiI	CCGC	5 cut(s)	51, 62, 797, 917, 986
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	662, 887, 950
TaiI	ACGT	3 cut(s)	168, 219, 735
TaqI	TCGA	4 cut(s)	78, 235, 242, 669
TasI	AATT	3 cut(s)	317, 555, 716
TatI	WGTACW	2 cut(s)	739, 893
TauI	GCSGC	2 cut(s)	53, 65
TfiI	GAWTC	4 cut(s)	75, 131, 237, 256
Tru1I	TTAA	3 cut(s)	312, 389, 969
Tru9I	TTAA	3 cut(s)	312, 389, 969
TscAI	CASTG	2 cut(s)	880, 890
TseFI	GTSAC	3 cut(s)	161, 406, 881
TseI	GCWGC	5 cut(s)	59, 365, 396, 416, 527
Tsp45I	GTSAC	3 cut(s)	161, 406, 881
TspDTI	ATGAA	3 cut(s)	242, 720, 798
TspRI	CASTG	2 cut(s)	880, 890
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	2 cut(s)	555, 716
XceI	RCATGY	3 cut(s)	797, 1036, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.