Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

16953997 .. 16956885

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTGAGCCAGATTCTGTAAACGAAGCCAAGGAGAAGAAGAAGAAGCTATGGAAAGCTGTTTTCGCAATCTCTGGGATCATGCTCACTCTCGTCATCTATGGTCTTCTTCAGGAAAAGATCATGAGAGTACCTTATGGATTGAAAAAAGAGTACTTTAAGCACTCTTTGTTTCTTGTTTTCTGTAATCGTCTCACTACATCAGCTGTTTCTGCTGCTGCTTTACTGGCAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTTATATCAGTAACTAACATCTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTTTCCCAGTCCAAACTTTGGCTAAATGTGCCAAGATGATACCTGTAATGGTTTGGGGAACTCTCATTATGCAGAAAAAGTATAGGGGATTTGATTATCTAGTGGCCTTTCTCGTGACTCTTGGCTGCTCTGTGTTTATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAAGAGAAAATACTGTGTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGTTATAATATGGAAATACATAACCAGATATTCTACACAACAATTTGTTCCTCTATTCTTAGTTTTACTGGCCTTATATTGCAAGGACATTTACTCCCAGCAGTAGACTTTGTTTCTCGACATAGGGATTGCCTATTTGACATAGCTTTGCTTTCCACTGTAGCAACAGCCAGCCAATTTTTCATTTCCTACACCATTAGGACATTTGGTGCTCTAACGTTTGCTGCCATAATGACTACAAGGCAGCTTGCCAGCATCATGCTCTCCTGCATTTGGTTCTCACACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGATCTCTATATGCTAAAACCTTCGTGAAGAAGAAATCAGAAAAGCCGCCGGCAGCTCAAGAACTTCCACGGGATGAAGAGGCGCAGCCTCTGAAGGGAAACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

347

Amino Acids

38.86

Weight (kDa)

9.18

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	20 - 320	3.1e-83	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 615
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	3 cut(s)	488, 896, 983
AclI	AACGTT	1 cut(s)	827
AclWI	GGATC	6 cut(s)	86, 242, 255, 915, 928, 946
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	3 cut(s)	132, 155, 509
AfiI	CCNNNNNNNGG	4 cut(s)	319, 355, 882, 1031
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	8 cut(s)	49, 59, 206, 257, 755, 856, 903, 992
AluI	AGCT	8 cut(s)	49, 59, 206, 257, 755, 856, 903, 992
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	6 cut(s)	86, 242, 255, 915, 928, 946
AlwNI	CAGNNNCTG	2 cut(s)	17, 1027
AoxI	GGCC	3 cut(s)	321, 441, 679
ApeKI	GCWGC	7 cut(s)	215, 218, 462, 833, 853, 989, 1021
AspLEI	GCGC	1 cut(s)	1021
AspS9I	GGNCC	1 cut(s)	322
BamHI	GGATCC	2 cut(s)	247, 920
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	7 cut(s)	202, 205, 449, 820, 865, 1001, 1033
BccI	CCATC	1 cut(s)	566
BciVI	GTATCC	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	252, 768
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	8 cut(s)	216, 219, 463, 834, 854, 983, 990, 1022
BlpI	GCTNAGC	2 cut(s)	6, 899
BlsI	GCNGC	8 cut(s)	217, 220, 464, 835, 855, 984, 991, 1023
BmcAI	AGTACT	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	249, 922
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	98
Bpu1102I	GCTNAGC	2 cut(s)	6, 899
BpuEI	CTTGAG	2 cut(s)	311, 978
BsaJI	CCNNGG	2 cut(s)	30, 1004
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 355, 882, 1031
Bse118I	RCCGGY	1 cut(s)	985
Bse1I	ACTGG	3 cut(s)	231, 344, 682
BseDI	CCNNGG	2 cut(s)	30, 1004
BseGI	GGATG	1 cut(s)	1015
BseLI	CCNNNNNNNGG	4 cut(s)	319, 355, 882, 1031
BseNI	ACTGG	3 cut(s)	231, 344, 682
BseXI	GCAGC	7 cut(s)	202, 205, 449, 820, 865, 1001, 1033
BseYI	CCCAGC	2 cut(s)	706, 903
BshFI	GGCC	3 cut(s)	323, 443, 681
BsiHKAI	GWGCWC	1 cut(s)	823
BsiSI	CCGG	3 cut(s)	260, 485, 986
BslI	CCNNNNNNNGG	4 cut(s)	319, 355, 882, 1031
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	323, 443, 681
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	5 cut(s)	78, 120, 247, 920, 938
Bsp1720I	GCTNAGC	2 cut(s)	6, 899
BspACI	CCGC	3 cut(s)	488, 896, 983
BspANI	GGCC	3 cut(s)	323, 443, 681
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	249, 922
BspPI	GGATC	6 cut(s)	86, 242, 255, 915, 928, 946
BsrFI	RCCGGY	1 cut(s)	985
BsrI	ACTGG	3 cut(s)	231, 344, 682
BssAI	RCCGGY	1 cut(s)	985
BssECI	CCNNGG	2 cut(s)	30, 1004
BssMI	GATC	5 cut(s)	78, 120, 247, 920, 938
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	532, 769
Bst6I	CTCTTC	2 cut(s)	514, 1008
BstC8I	GCNNGC	5 cut(s)	232, 781, 858, 862, 987
BstDEI	CTNAG	3 cut(s)	6, 668, 899
BstDSI	CCRYGG	1 cut(s)	1004
BstF5I	GGATG	1 cut(s)	1015
BstHHI	GCGC	1 cut(s)	1021
BstKTI	GATC	5 cut(s)	81, 123, 250, 923, 941
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	78, 120, 247, 920, 938
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 212, 227, 365
BstNSI	RCATGY	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	252, 768
BstV1I	GCAGC	7 cut(s)	202, 205, 449, 820, 865, 1001, 1033
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	3 cut(s)	247, 920, 938
BstYI	RGATCY	3 cut(s)	247, 920, 938
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	323, 443, 681
BtgI	CCRYGG	1 cut(s)	1004
BtsCI	GGATG	1 cut(s)	1015
BtsI	GCAGTG	1 cut(s)	917
BtsIMutI	CAGTG	2 cut(s)	765, 917
Cac8I	GCNNGC	5 cut(s)	232, 781, 858, 862, 987
CaiI	CAGNNNCTG	2 cut(s)	17, 1027
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	1021
Cfr10I	RCCGGY	1 cut(s)	985
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	131, 154, 508
CviAII	CATG	4 cut(s)	82, 124, 309, 868
CviQI	GTAC	3 cut(s)	131, 154, 508
DdeI	CTNAG	3 cut(s)	6, 668, 899
DpnI	GATC	5 cut(s)	80, 122, 249, 922, 940
DpnII	GATC	5 cut(s)	78, 120, 247, 920, 938
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	514, 1008
EarI	CTCTTC	2 cut(s)	514, 1008
Eco130I	CCWWGG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	4 cut(s)	85, 127, 312, 871
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	4 cut(s)	81, 123, 308, 867
FauI	CCCGC	2 cut(s)	481, 903
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	8 cut(s)	216, 219, 463, 834, 854, 983, 990, 1022
FokI	GGATG	1 cut(s)	1022
Fsp4HI	GCNGC	8 cut(s)	216, 219, 463, 834, 854, 983, 990, 1022
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	1020
GluI	GCNGC	8 cut(s)	216, 219, 463, 834, 854, 983, 990, 1022
GsaI	CCCAGC	2 cut(s)	710, 907
HaeIII	GGCC	3 cut(s)	323, 443, 681
HapII	CCGG	3 cut(s)	260, 485, 986
HhaI	GCGC	1 cut(s)	1021
Hin1II	CATG	4 cut(s)	85, 127, 312, 871
Hin6I	GCGC	1 cut(s)	1019
HinP1I	GCGC	1 cut(s)	1019
HinfI	GANTC	2 cut(s)	14, 454
HpaII	CCGG	3 cut(s)	260, 485, 986
Hpy166II	GTNNAC	2 cut(s)	22, 715
Hpy188I	TCNGA	3 cut(s)	938, 976, 1029
Hpy188III	TCNNGA	6 cut(s)	113, 124, 451, 726, 961, 995
Hpy8I	GTNNAC	2 cut(s)	22, 715
HpyAV	CCTTC	2 cut(s)	967, 1024
HpyCH4III	ACNGT	2 cut(s)	532, 769
HpyCH4IV	ACGT	1 cut(s)	827
HpyCH4V	TGCA	3 cut(s)	409, 691, 879
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 212, 227, 365
HpyF3I	CTNAG	3 cut(s)	6, 668, 899
HpySE526I	ACGT	1 cut(s)	827
Hsp92II	CATG	4 cut(s)	85, 127, 312, 871
HspAI	GCGC	1 cut(s)	1019
KroI	GCCGGC	1 cut(s)	985
KroNI	GCCGGC	1 cut(s)	987
Kzo9I	GATC	5 cut(s)	78, 120, 247, 920, 938
LmnI	GCTCC	2 cut(s)	262, 907
Lsp1109I	GCAGC	7 cut(s)	202, 205, 449, 820, 865, 1001, 1033
LweI	GCATC	1 cut(s)	873
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	827
MaeIII	GTNAC	2 cut(s)	286, 451
MalI	GATC	5 cut(s)	80, 122, 249, 922, 940
MboI	GATC	5 cut(s)	78, 120, 247, 920, 938
MboII	GAAGA	9 cut(s)	49, 52, 55, 98, 101, 531, 976, 979, 1025
MflI	RGATCY	3 cut(s)	247, 920, 938
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	3 cut(s)	651, 785, 927
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	313, 335, 670, 1009, 1035
MroNI	GCCGGC	1 cut(s)	985
MseI	TTAA	4 cut(s)	159, 299, 606, 1042
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	260, 485, 986
MwoI	GCNNNNNNNGC	4 cut(s)	65, 212, 227, 365
NaeI	GCCGGC	1 cut(s)	987
NdeII	GATC	5 cut(s)	78, 120, 247, 920, 938
NgoMIV	GCCGGC	1 cut(s)	985
NlaIII	CATG	4 cut(s)	85, 127, 312, 871
NlaIV	GGNNCC	2 cut(s)	249, 922
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	312
PagI	TCATGA	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	8 cut(s)	217, 220, 464, 835, 855, 984, 991, 1023
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PsiI	TTATAA	2 cut(s)	267, 615
Psp1406I	AACGTT	1 cut(s)	827
PspFI	CCCAGC	2 cut(s)	706, 903
PspN4I	GGNNCC	2 cut(s)	249, 922
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	2 cut(s)	17, 1027
PsuI	RGATCY	3 cut(s)	247, 920, 938
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	132, 155, 509
RsaNI	GTAC	3 cut(s)	131, 154, 508
SaqAI	TTAA	4 cut(s)	159, 299, 606, 1042
SatI	GCNGC	8 cut(s)	216, 219, 463, 834, 854, 983, 990, 1022
Sau3AI	GATC	5 cut(s)	78, 120, 247, 920, 938
Sau96I	GGNCC	1 cut(s)	322
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	873
SfcI	CTRYAG	2 cut(s)	252, 768
SmlI	CTYRAG	2 cut(s)	326, 993
SmoI	CTYRAG	2 cut(s)	326, 993
Sse9I	AATT	3 cut(s)	651, 785, 927
SsiI	CCGC	3 cut(s)	488, 896, 983
SspMI	CTAG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	532, 769
TaiI	ACGT	1 cut(s)	830
TaqI	TCGA	1 cut(s)	727
TasI	AATT	3 cut(s)	651, 785, 927
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	985
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	4 cut(s)	159, 299, 606, 1042
Tru9I	TTAA	4 cut(s)	159, 299, 606, 1042
TscAI	CASTG	2 cut(s)	772, 917
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	7 cut(s)	215, 218, 462, 833, 853, 989, 1021
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	781, 1026
TspGWI	ACGGA	2 cut(s)	495, 913
TspRI	CASTG	2 cut(s)	772, 917
Van91I	CCANNNNNTGG	1 cut(s)	355
XceI	RCATGY	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.