Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

68854285 .. 68859864

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGAAACGACGTCGCTCGACGGTCCGCGAGAGCGCAGCAGGCTATGGAAAGGGGTTTTCGCCGTGACCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTACAGGAGAAGATCATGAGAGTGCCTTACGGGGAAGACCATGCCTTTTTCAAGTACTCATTGTTTCTGGTTCTCTGCAATCGAATCACAACGTCGGCGATTTCCGCCGGAGCTTTAATCTCAAGTAAAAAAGCTTTGAATCCGGTAGCTCCGTTTTACAAATACGGCCTTGTATCAGTTACCAATATACTGACCACTACATGTCAGTATGAGGCCCTCAAGTATGTAAGCTTTCCTGTTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTTATGGTTTGGGGTACTATCATTATGCAAAAGAAATACAAGGGACGTGACTATTTGTTTGCTTTTCTAGTTACAGTTGGCTGTTCAATATTTATACTATATCCGGCAGGGTCTGACTTGGGTCCAACTGATGCATTTGGTAGAGCAAGAGAAAATACCATGTGGGGCGTCTCTCTTATGATCGGTTACCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGTTATGATATGGAGATACACAATCAAATATTCTACACAACGTTCTGTTCTTGTGTTCTTAGCTTGAGTGGTCTTATATTACAAGGACAACTGGTTCCAGCAATACAATTTGTTTCTAGCCACAATGATTGTTTCTTTGACATCGCACTGCTTTCGACTGTAGCAACAGCTAGCCAGTTTTTCATTTCTTACACAATTCGCACATTTGGTGCTCTAACGTTTGCCACTATAATGACCACAAGACAGTTGGTCAGCATTATGCTATCATGCGTGTGGTTTCATCACCCGCTTAGCTGGGAACAGTGGATTGGAGCTGTAGTTGTCTTTGGTTCCCTATATGCAAAAACGTTTATGAGAAATGCAACTCCAAGTCCGCCCCCGTCAGACAAAGTACAGGATGGACCTTCTAGCCCAGGAAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

349

Amino Acids

38.57

Weight (kDa)

9.01

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	19 - 321	1.1e-81	UAA transporter family
EamA	PF00892	180 - 318	1.2e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	29, 210, 902, 989
AclI	AACGTT	3 cut(s)	656, 833, 962
AclWI	GGATC	2 cut(s)	1033, 1046
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	14, 546
AfaI	GTAC	3 cut(s)	161, 394, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	1033, 1034
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	157, 244, 347, 465
AhdI	GACNNNNNGTC	1 cut(s)	863
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	8 cut(s)	218, 239, 254, 336, 678, 785, 909, 929
AluI	AGCT	8 cut(s)	218, 239, 254, 336, 678, 785, 909, 929
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	2 cut(s)	1033, 1046
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	3, 271, 318
ApeKI	GCWGC	1 cut(s)	39
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	4 cut(s)	26, 319, 500, 1016
AsuHPI	GGTGA	2 cut(s)	85, 890
AsuNHI	GCTAGC	1 cut(s)	785
AvaII	GGWCC	3 cut(s)	26, 500, 1016
BamHI	GGATCC	1 cut(s)	1038
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	2 cut(s)	572, 1007
BceAI	ACGGC	3 cut(s)	50, 115, 286
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BciT130I	CCWGG	1 cut(s)	1029
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	4 cut(s)	446, 732, 786, 1023
BfmI	CTRYAG	3 cut(s)	107, 774, 930
BisI	GCNGC	1 cut(s)	40
BlpI	GCTNAGC	1 cut(s)	905
BlsI	GCNGC	1 cut(s)	41
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	1029
Bme18I	GGWCC	3 cut(s)	26, 500, 1016
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	4 cut(s)	26, 319, 500, 1016
BmiI	GGNNCC	4 cut(s)	501, 711, 946, 1040
BmrFI	CCNGG	1 cut(s)	1029
BmsI	GCATC	1 cut(s)	499
BmtI	GCTAGC	1 cut(s)	789
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	905
BpuEI	CTTGAG	3 cut(s)	211, 308, 700
BsaHI	GRCGYC	2 cut(s)	14, 546
BsaJI	CCNNGG	2 cut(s)	568, 1027
BsaWI	WCCGGW	2 cut(s)	71, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	1033, 1034
Bse1I	ACTGG	2 cut(s)	711, 790
BseBI	CCWGG	1 cut(s)	1029
BseDI	CCNNGG	2 cut(s)	568, 1027
BseGI	GGATG	1 cut(s)	1018
BseLI	CCNNNNNNNGG	2 cut(s)	1033, 1034
BseNI	ACTGG	2 cut(s)	711, 790
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	5, 273, 320
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	4 cut(s)	72, 213, 248, 482
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	1033, 1034
BsmAI	GTCTC	1 cut(s)	553
BsmBI	CGTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	5, 273, 320
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	3 cut(s)	117, 558, 1038
Bsp1720I	GCTNAGC	1 cut(s)	905
BspACI	CCGC	4 cut(s)	29, 210, 902, 989
BspANI	GGCC	3 cut(s)	5, 273, 320
BspFNI	CGCG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	4 cut(s)	501, 711, 946, 1040
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	1033, 1046
BsrI	ACTGG	2 cut(s)	711, 790
BssECI	CCNNGG	2 cut(s)	568, 1027
BssMI	GATC	3 cut(s)	117, 558, 1038
BssNI	GRCGYC	2 cut(s)	14, 546
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	1029
Bst4CI	ACNGT	5 cut(s)	26, 454, 775, 861, 918
BstACI	GRCGYC	2 cut(s)	14, 546
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	44, 787
BstDEI	CTNAG	2 cut(s)	674, 905
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	120, 561, 1041
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	3 cut(s)	117, 558, 1038
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
BstNI	CCWGG	1 cut(s)	1029
BstNSI	RCATGY	1 cut(s)	309
BstPAI	GACNNNNGTC	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	1027
BstSFI	CTRYAG	3 cut(s)	107, 774, 930
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	1038
BstYI	RGATCY	1 cut(s)	1038
BsuRI	GGCC	3 cut(s)	5, 273, 320
BtgZI	GCGATG	1 cut(s)	742
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	1018
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	761, 923
Cac8I	GCNNGC	2 cut(s)	44, 787
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	4 cut(s)	26, 319, 500, 1016
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	160, 393, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	725, 760
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	6 cut(s)	79, 121, 146, 306, 538, 882
CviQI	GTAC	3 cut(s)	160, 393, 1007
DdeI	CTNAG	2 cut(s)	674, 905
DpnI	GATC	3 cut(s)	119, 560, 1040
DpnII	GATC	3 cut(s)	117, 558, 1038
DraI	TTTAAA	1 cut(s)	613
DriI	GACNNNNNGTC	1 cut(s)	863
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	863
EciI	GGCGGA	2 cut(s)	199, 978
Eco130I	CCWWGG	1 cut(s)	568
Eco47I	GGWCC	3 cut(s)	26, 500, 1016
Eco91I	GGTNACC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	1027
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	553
FaeI	CATG	6 cut(s)	82, 124, 149, 309, 541, 885
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	6 cut(s)	78, 120, 145, 305, 537, 881
FauI	CCCGC	1 cut(s)	909
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	1025
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	4 cut(s)	446, 732, 786, 1023
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	40
GsaI	CCCAGC	1 cut(s)	913
HaeIII	GGCC	3 cut(s)	5, 273, 320
HapII	CCGG	4 cut(s)	72, 213, 248, 482
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	14, 546
Hin1II	CATG	6 cut(s)	82, 124, 149, 309, 541, 885
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	237, 334
HinfI	GANTC	3 cut(s)	75, 189, 244
HpaII	CCGG	4 cut(s)	72, 213, 248, 482
HphI	GGTGA	2 cut(s)	85, 890
Hpy188I	TCNGA	2 cut(s)	493, 1000
Hpy188III	TCNNGA	2 cut(s)	79, 121
Hpy99I	CGWCG	4 cut(s)	16, 19, 26, 202
HpyAV	CCTTC	1 cut(s)	1029
HpyCH4III	ACNGT	5 cut(s)	26, 454, 775, 861, 918
HpyCH4IV	ACGT	6 cut(s)	14, 197, 424, 656, 833, 962
HpyCH4V	TGCA	6 cut(s)	183, 356, 406, 512, 956, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
HpyF3I	CTNAG	2 cut(s)	674, 905
HpySE526I	ACGT	6 cut(s)	14, 197, 424, 656, 833, 962
Hsp92I	GRCGYC	2 cut(s)	14, 546
Hsp92II	CATG	6 cut(s)	82, 124, 149, 309, 541, 885
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	117, 558, 1038
LmnI	GCTCC	3 cut(s)	215, 259, 926
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	4 cut(s)	446, 732, 786, 1023
MaeII	ACGT	6 cut(s)	14, 197, 424, 656, 833, 962
MaeIII	GTNAC	6 cut(s)	67, 91, 283, 425, 448, 563
MalI	GATC	3 cut(s)	119, 560, 1040
MboI	GATC	3 cut(s)	117, 558, 1038
MboII	GAAGA	2 cut(s)	127, 152
MflI	RGATCY	1 cut(s)	1038
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	2 cut(s)	722, 810
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	2 cut(s)	310, 332
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	221, 612
MslI	CAYNNNNRTG	3 cut(s)	125, 845, 886
MspI	CCGG	4 cut(s)	72, 213, 248, 482
MspR9I	CCNGG	1 cut(s)	1029
MvaI	CCWGG	1 cut(s)	1029
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
NdeII	GATC	3 cut(s)	117, 558, 1038
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	6 cut(s)	82, 124, 149, 309, 541, 885
NlaIV	GGNNCC	4 cut(s)	501, 711, 946, 1040
NmuCI	GTSAC	3 cut(s)	67, 91, 425
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	75, 189, 244
PkrI	GCNGC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	498
Psp1406I	AACGTT	3 cut(s)	656, 833, 962
Psp6I	CCWGG	1 cut(s)	1027
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	1027
PspN4I	GGNNCC	4 cut(s)	501, 711, 946, 1040
PspPI	GGNCC	4 cut(s)	26, 319, 500, 1016
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	1038
RsaI	GTAC	3 cut(s)	161, 394, 1008
RsaNI	GTAC	3 cut(s)	160, 393, 1007
RseI	CAYNNNNRTG	3 cut(s)	125, 845, 886
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	221, 612
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	3 cut(s)	117, 558, 1038
Sau96I	GGNCC	4 cut(s)	26, 319, 500, 1016
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	1029
SduI	GDGCHC	1 cut(s)	829
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	3 cut(s)	107, 774, 930
SinI	GGWCC	3 cut(s)	26, 500, 1016
SmiMI	CAYNNNNRTG	3 cut(s)	125, 845, 886
SmlI	CTYRAG	3 cut(s)	226, 323, 679
SmoI	CTYRAG	3 cut(s)	226, 323, 679
Sse9I	AATT	2 cut(s)	722, 810
SsiI	CCGC	4 cut(s)	29, 210, 902, 989
SspI	AATATT	2 cut(s)	468, 645
SspMI	CTAG	4 cut(s)	446, 732, 786, 1023
StyD4I	CCNGG	1 cut(s)	1027
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	5 cut(s)	26, 454, 775, 861, 918
TaiI	ACGT	6 cut(s)	17, 200, 427, 659, 836, 965
TaqI	TCGA	3 cut(s)	21, 187, 770
TasI	AATT	2 cut(s)	722, 810
TatI	WGTACW	2 cut(s)	159, 1006
TfiI	GAWTC	3 cut(s)	75, 189, 244
Tru1I	TTAA	2 cut(s)	221, 612
Tru9I	TTAA	2 cut(s)	221, 612
TscAI	CASTG	2 cut(s)	768, 923
TseFI	GTSAC	3 cut(s)	67, 91, 425
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	3 cut(s)	67, 91, 425
TspDTI	ATGAA	2 cut(s)	787, 884
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	768, 923
VpaK11BI	GGWCC	3 cut(s)	26, 500, 1016
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XspI	CTAG	4 cut(s)	446, 732, 786, 1023
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.