Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

70519602 .. 70525469

Gene Structure 5868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG439900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCAGGAGAAGATCATGAGAGTGCCTTACGGGGAAGACCATGCCTTTTTCAAGTACTCATTGTTTCTGGTTCTCTGCAATCGAATCACAACGTCGGCGATTTCTGCCGGAGCTTTAATCTCAAGTAAAAAGGCTTTGAATCCGGTAGCTCCGTTTTACAAATACGGCCTTGTATCAGTTACCAATATACTAACCACTACATGTCAGTATGAGGCCCTCAAGTATGTAAGCTTTCCTGTTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTTATGGTTTGGGGTACCATCATTATGCAAAAGAAATACAAGGGGCGTGACTATTTGTTTGCTTTTCTAGTTACGGTTGGCTGTTCAATATTTATACTATATCCGGCAGGGTCTGACTTGGGCCCAACTGATGCATTTGGTAGAGCAAGAGAAAATACTATGTGGGGCGTCTCTCTTATGATCGGTTACCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGTTATGATATGGAGATACACAATCAAATATTCTACACAACGTTCTGTTCTTGTGTTCTTAGCTTGAGCGGTCTCATATTACAAGGACAACTGGTTCCAGCAATACAATTTGTTTCTAGCCACAATGATTGTTTCTTTGACATCGCACTGCTTTCGACTGTAGCAACAGCTAGTCAATTTTTCATTTCTTACACAATTCGCACATTTGGTGCTCTAACGTTTGCCACTATAATGACCACAAGACAGTTGGTCAGCATTATGCTATCATGCGTGTGGTTTCATCACCCGCTTAGCTGGGAACAGTGGATTGGAGCTGTGGTTGTCTTTGGTTCCCTATATGCAAAAACGTTTATGAGAAACGCAACTCCAAATCCGTCCCCGTCAGACAAAGTGCAGGATGGACCTTCTAGCCCAGTAAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

313

Amino Acids

34.82

Weight (kDa)

8.93

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	1 - 286	3.1e-77	UAA transporter family
EamA	PF00892	145 - 283	9.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	579
AciI	CCGC	2 cut(s)	579, 797
AclI	AACGTT	3 cut(s)	551, 728, 857
AclWI	GGATC	2 cut(s)	928, 941
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	56, 289
AfiI	CCNNNNNNNGG	2 cut(s)	928, 929
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	52, 139, 242, 360
AhdI	GACNNNNNGTC	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	801, 833
AloI	GAACNNNNNNTCC	2 cut(s)	588, 620
AluBI	AGCT	7 cut(s)	113, 149, 231, 573, 680, 804, 824
AluI	AGCT	7 cut(s)	113, 149, 231, 573, 680, 804, 824
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	448, 587
AlwI	GGATC	2 cut(s)	928, 941
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	166, 213, 394
ApaI	GGGCCC	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	4 cut(s)	214, 394, 395, 911
AsuHPI	GGTGA	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	911
BaeGI	GKGCMC	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	933
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	724
BccI	CCATC	3 cut(s)	299, 467, 902
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	645, 679
BcoDI	GTCTC	2 cut(s)	448, 587
BfaI	CTAG	4 cut(s)	341, 627, 681, 918
BfmI	CTRYAG	1 cut(s)	669
BlpI	GCTNAGC	1 cut(s)	800
BmcAI	AGTACT	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	911
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgT120I	GGNCC	4 cut(s)	214, 394, 395, 911
BmiI	GGNNCC	5 cut(s)	289, 396, 606, 841, 935
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	917
BpiI	GAAGAC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	800
BpuEI	CTTGAG	3 cut(s)	106, 203, 595
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 929
Bse1I	ACTGG	2 cut(s)	606, 923
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	1 cut(s)	913
BseLI	CCNNNNNNNGG	2 cut(s)	928, 929
BseNI	ACTGG	2 cut(s)	606, 923
BseSI	GKGCMC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	804
BsgI	GTGCAG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	168, 215, 396
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	3 cut(s)	108, 143, 377
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	2 cut(s)	928, 929
BsmAI	GTCTC	2 cut(s)	448, 587
BsmBI	CGTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	168, 215, 396
Bso31I	GGTCTC	1 cut(s)	587
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	398, 724
Bsp143I	GATC	3 cut(s)	12, 453, 933
Bsp1720I	GCTNAGC	1 cut(s)	800
BspACI	CCGC	2 cut(s)	579, 797
BspANI	GGCC	3 cut(s)	168, 215, 396
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	5 cut(s)	289, 396, 606, 841, 935
BspPI	GGATC	2 cut(s)	928, 941
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	587
BsrBI	CCGCTC	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	606, 923
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	3 cut(s)	12, 453, 933
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	4 cut(s)	349, 670, 756, 813
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	569, 800
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	913
BstKTI	GATC	3 cut(s)	15, 456, 936
BstMAI	GTCTC	2 cut(s)	448, 587
BstMBI	GATC	3 cut(s)	12, 453, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 257, 483
BstNSI	RCATGY	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	933
BstYI	RGATCY	1 cut(s)	933
BsuRI	GGCC	3 cut(s)	168, 215, 396
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	2 cut(s)	656, 818
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	4 cut(s)	214, 394, 395, 911
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	55, 288
CspCI	CAANNNNNGTGG	2 cut(s)	620, 655
CviAII	CATG	4 cut(s)	16, 41, 201, 777
CviQI	GTAC	2 cut(s)	55, 288
DdeI	CTNAG	2 cut(s)	569, 800
DpnI	GATC	3 cut(s)	14, 455, 935
DpnII	GATC	3 cut(s)	12, 453, 933
DraI	TTTAAA	1 cut(s)	508
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1105I	GACNNNNNGTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	4 cut(s)	19, 44, 204, 780
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	4 cut(s)	15, 40, 200, 776
FauI	CCCGC	1 cut(s)	804
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	4 cut(s)	341, 627, 681, 918
GsaI	CCCAGC	1 cut(s)	808
HaeIII	GGCC	3 cut(s)	168, 215, 396
HapII	CCGG	3 cut(s)	108, 143, 377
HgaI	GACGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	4 cut(s)	19, 44, 204, 780
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	2 cut(s)	84, 139
HpaII	CCGG	3 cut(s)	108, 143, 377
HphI	GGTGA	1 cut(s)	785
Hpy188I	TCNGA	2 cut(s)	388, 895
Hpy188III	TCNNGA	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	924
HpyCH4III	ACNGT	4 cut(s)	349, 670, 756, 813
HpyCH4IV	ACGT	4 cut(s)	92, 551, 728, 857
HpyCH4V	TGCA	7 cut(s)	4, 78, 251, 301, 407, 851, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 257, 483
HpyF3I	CTNAG	2 cut(s)	569, 800
HpySE526I	ACGT	4 cut(s)	92, 551, 728, 857
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	19, 44, 204, 780
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	12, 453, 933
LmnI	GCTCC	3 cut(s)	110, 154, 821
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	4 cut(s)	341, 627, 681, 918
MaeII	ACGT	4 cut(s)	92, 551, 728, 857
MaeIII	GTNAC	4 cut(s)	178, 320, 343, 458
MalI	GATC	3 cut(s)	14, 455, 935
MbiI	CCGCTC	1 cut(s)	579
MboI	GATC	3 cut(s)	12, 453, 933
MboII	GAAGA	2 cut(s)	22, 47
MflI	RGATCY	1 cut(s)	933
MhlI	GDGCHC	2 cut(s)	398, 724
MluCI	AATT	3 cut(s)	617, 686, 705
MnlI	CCTC	2 cut(s)	205, 227
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	2 cut(s)	116, 507
MslI	CAYNNNNRTG	4 cut(s)	20, 296, 740, 781
MspI	CCGG	3 cut(s)	108, 143, 377
MwoI	GCNNNNNNNGC	3 cut(s)	104, 257, 483
NdeII	GATC	3 cut(s)	12, 453, 933
NlaIII	CATG	4 cut(s)	19, 44, 204, 780
NlaIV	GGNNCC	5 cut(s)	289, 396, 606, 841, 935
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	204
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	84, 139
PscI	ACATGT	1 cut(s)	200
Psp1406I	AACGTT	3 cut(s)	551, 728, 857
PspEI	GGTNACC	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	804
PspN4I	GGNNCC	5 cut(s)	289, 396, 606, 841, 935
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	4 cut(s)	214, 394, 395, 911
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	933
RsaI	GTAC	2 cut(s)	56, 289
RsaNI	GTAC	2 cut(s)	55, 288
RseI	CAYNNNNRTG	4 cut(s)	20, 296, 740, 781
SaqAI	TTAA	2 cut(s)	116, 507
Sau3AI	GATC	3 cut(s)	12, 453, 933
Sau96I	GGNCC	4 cut(s)	214, 394, 395, 911
ScaI	AGTACT	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	398, 724
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	911
SmiMI	CAYNNNNRTG	4 cut(s)	20, 296, 740, 781
SmlI	CTYRAG	3 cut(s)	121, 218, 574
SmoI	CTYRAG	3 cut(s)	121, 218, 574
Sse9I	AATT	3 cut(s)	617, 686, 705
SsiI	CCGC	2 cut(s)	579, 797
SspI	AATATT	2 cut(s)	363, 540
SspMI	CTAG	4 cut(s)	341, 627, 681, 918
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	349, 670, 756, 813
TaiI	ACGT	4 cut(s)	95, 554, 731, 860
TaqI	TCGA	2 cut(s)	82, 665
TasI	AATT	3 cut(s)	617, 686, 705
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	84, 139
Tru1I	TTAA	2 cut(s)	116, 507
Tru9I	TTAA	2 cut(s)	116, 507
TscAI	CASTG	2 cut(s)	663, 818
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	682, 779
TspGWI	ACGGA	2 cut(s)	141, 873
TspRI	CASTG	2 cut(s)	663, 818
VpaK11BI	GGWCC	1 cut(s)	911
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XspI	CTAG	4 cut(s)	341, 627, 681, 918
ZrmI	AGTACT	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.