Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Forward (+)

21968051 .. 21973729

Gene Structure 5679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCCGCAACGACGTCGCTCGACGGTCCGCGAGAGCGCAGCAGGCTATGGAAAGGGGTTTTCGCCGTGACCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTACAGGAGAAGATCATGAGAGTGCCTTACGGGGAAGACCATGCCTTTTTCAAGTACTCATTGTTTCTGGTTCTCTGCAATCGAATCACAACGTCGGCGATTTCCGCCGGAGCTTTAATCTCAAGTAAAAAGGCTTTGAATCCGGTAGCTCCGTTTTACAAATACGGCCTTGTATCAGTTACCAATATACTGACCACCACATGTCAGTATGAGGCCCTCAAGTATGTAAGCTTTCCTGTTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTTATGGAGGCAGTCGGAATATGGCATCAGACTTGTTGTTTAACTTCTGCATCTGATATAACTTTAAAGAATATGACTTACTACAGTCAAGATGAGTATTCTGGGAAGGTGGAAGTGGAGGAGGGGCAGGGCTGGAGGAGGGTGTTTGCACTTACAATTGGTTGTATTGAGAAGGAAGTGGTTATGATAGTCACCAGTCTCTGGTTCCCTGTAAAGTTTACTTTTGCAGGGTCTGACTTGGGCCCAACTGATGCATTTGGTAGAGCAAGAGAAAATACTATGTGGGGCGTCTCTCTTATGATCGGTTACCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGTTATGATATGGAGATACACAATCAAATATTCTATACAACGTTCTGTTCTTGTGTTCTTAGCTTGAGCGGTCTTATATTACAAGGACAACTGGTTCCAGCAATACAATTTGTTTCTAGCCACAATGATTGTTTCTTTGACATCGCACTGCTTTCGACTGTAGCAACAGCTAGCCAATTTTTCATTTCTTACACAATTCGCACATTTGGTGCTCTAACGTTTGCCACTATAATGACCACAAGACAGTTGGTCAGCATTATGCTATCATGCGTATGGTTTCATCACCCGCTTAGCTGGGAACAGTGGATTGGAGCTGTGGTTGTCTTTGGTTCCCTATATGCCAAAACGTTTATGAGAAATGCAACTCCAACTCCGTCCCCGTCAGACAAAGTGCAGGAGGGACCTTCTAGCCCAGTAAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

388

Amino Acids

43.07

Weight (kDa)

8.25

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	19 - 129	5.4e-20	UAA transporter family
UAA	PF08449	214 - 361	6.1e-42	UAA transporter family
EamA	PF00892	220 - 358	1.5e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccBSI	CCGCTC	1 cut(s)	804
AccII	CGCG	1 cut(s)	31
AciI	CCGC	5 cut(s)	6, 29, 210, 804, 1022
AclI	AACGTT	3 cut(s)	776, 953, 1082
AclWI	GGATC	2 cut(s)	1153, 1166
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	14, 666
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	579, 1153, 1154
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	157, 244, 347
AhdI	GACNNNNNGTC	1 cut(s)	983
AjuI	GAANNNNNNNTTGG	2 cut(s)	1026, 1058
AloI	GAACNNNNNNTCC	2 cut(s)	813, 845
AluBI	AGCT	7 cut(s)	218, 254, 336, 798, 905, 1029, 1049
AluI	AGCT	7 cut(s)	218, 254, 336, 798, 905, 1029, 1049
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	2 cut(s)	581, 673
AlwI	GGATC	2 cut(s)	1153, 1166
AlwNI	CAGNNNCTG	2 cut(s)	579, 611
AoxI	GGCC	4 cut(s)	3, 271, 318, 619
ApaI	GGGCCC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	5 cut(s)	26, 319, 619, 620, 1136
AsuHPI	GGTGA	3 cut(s)	85, 562, 1010
AsuNHI	GCTAGC	1 cut(s)	905
AvaII	GGWCC	2 cut(s)	26, 1136
BaeGI	GKGCMC	1 cut(s)	623
BamHI	GGATCC	1 cut(s)	1158
BanII	GRGCYC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	3 cut(s)	50, 115, 286
BcgI	CGANNNNNNTGC	3 cut(s)	31, 870, 904
BcoDI	GTCTC	2 cut(s)	581, 673
BfaI	CTAG	3 cut(s)	852, 906, 1143
BfmI	CTRYAG	3 cut(s)	107, 460, 894
BisI	GCNGC	2 cut(s)	6, 40
BlpI	GCTNAGC	1 cut(s)	1025
BlsI	GCNGC	2 cut(s)	7, 41
BmcAI	AGTACT	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	26, 1136
BmeRI	GACNNNNNGTC	1 cut(s)	983
BmgT120I	GGNCC	5 cut(s)	26, 319, 619, 620, 1136
BmiI	GGNNCC	6 cut(s)	584, 621, 831, 1066, 1137, 1160
BmrI	ACTGGG	1 cut(s)	1142
BmsI	GCATC	3 cut(s)	412, 437, 619
BmtI	GCTAGC	1 cut(s)	909
BmuI	ACTGGG	1 cut(s)	1142
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	1025
BpuEI	CTTGAG	3 cut(s)	211, 308, 820
BsaHI	GRCGYC	2 cut(s)	14, 666
BsaJI	CCNNGG	1 cut(s)	688
BsaWI	WCCGGW	2 cut(s)	71, 247
BsaXI	ACNNNNNCTCC	4 cut(s)	1038, 1068, 1090, 1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	579, 1153, 1154
Bse1I	ACTGG	3 cut(s)	573, 831, 1148
BseDI	CCNNGG	1 cut(s)	688
BseLI	CCNNNNNNNGG	3 cut(s)	579, 1153, 1154
BseNI	ACTGG	3 cut(s)	573, 831, 1148
BseRI	GAGGAG	2 cut(s)	512, 529
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	1029
BsgI	GTGCAG	1 cut(s)	1148
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	5, 273, 320, 621
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	3 cut(s)	72, 213, 248
BslFI	GGGAC	2 cut(s)	1096, 1149
BslI	CCNNNNNNNGG	3 cut(s)	579, 1153, 1154
BsmAI	GTCTC	2 cut(s)	581, 673
BsmBI	CGTCTC	1 cut(s)	673
BsmFI	GGGAC	2 cut(s)	1096, 1149
BsnI	GGCC	4 cut(s)	5, 273, 320, 621
Bsp120I	GGGCCC	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	623, 949
Bsp143I	GATC	3 cut(s)	117, 678, 1158
Bsp1720I	GCTNAGC	1 cut(s)	1025
BspACI	CCGC	5 cut(s)	6, 29, 210, 804, 1022
BspANI	GGCC	4 cut(s)	5, 273, 320, 621
BspFNI	CGCG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	6 cut(s)	584, 621, 831, 1066, 1137, 1160
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	2 cut(s)	1153, 1166
BsrBI	CCGCTC	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	573, 831, 1148
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	3 cut(s)	117, 678, 1158
BssNI	GRCGYC	2 cut(s)	14, 666
BssT1I	CCWWGG	1 cut(s)	688
Bst4CI	ACNGT	5 cut(s)	26, 464, 895, 981, 1038
BstACI	GRCGYC	2 cut(s)	14, 666
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	44, 907
BstDEI	CTNAG	2 cut(s)	794, 1025
BstEII	GGTNACC	1 cut(s)	683
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	120, 681, 1161
BstMAI	GTCTC	2 cut(s)	581, 673
BstMBI	GATC	3 cut(s)	117, 678, 1158
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 708
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	683
BstSFI	CTRYAG	3 cut(s)	107, 460, 894
BstSLI	GKGCMC	1 cut(s)	623
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	1158
BstYI	RGATCY	1 cut(s)	1158
BsuRI	GGCC	4 cut(s)	5, 273, 320, 621
BtgZI	GCGATG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	2 cut(s)	881, 1043
Cac8I	GCNNGC	2 cut(s)	44, 907
CaiI	CAGNNNCTG	2 cut(s)	579, 611
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	5 cut(s)	26, 319, 619, 620, 1136
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	845, 880
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	5 cut(s)	79, 121, 146, 306, 1002
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	794, 1025
DpnI	GATC	3 cut(s)	119, 680, 1160
DpnII	GATC	3 cut(s)	117, 678, 1158
DraI	TTTAAA	2 cut(s)	444, 733
DriI	GACNNNNNGTC	1 cut(s)	983
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	983
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	26, 1136
Eco91I	GGTNACC	1 cut(s)	683
EcoO109I	RGGNCCY	2 cut(s)	319, 1136
EcoO65I	GGTNACC	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	673
FaeI	CATG	5 cut(s)	82, 124, 149, 309, 1005
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	2 cut(s)	1096, 1149
FatI	CATG	5 cut(s)	78, 120, 145, 305, 1001
FauI	CCCGC	1 cut(s)	1029
Fnu4HI	GCNGC	2 cut(s)	6, 40
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	6, 40
FspBI	CTAG	3 cut(s)	852, 906, 1143
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	6, 40
GsaI	CCCAGC	1 cut(s)	1033
GsuI	CTGGAG	1 cut(s)	532
HaeIII	GGCC	4 cut(s)	5, 273, 320, 621
HapII	CCGG	3 cut(s)	72, 213, 248
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	14, 666
Hin1II	CATG	5 cut(s)	82, 124, 149, 309, 1005
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	3 cut(s)	75, 189, 244
HpaII	CCGG	3 cut(s)	72, 213, 248
HphI	GGTGA	3 cut(s)	85, 562, 1010
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	5 cut(s)	395, 408, 433, 613, 1120
Hpy188III	TCNNGA	3 cut(s)	79, 121, 467
Hpy8I	GTNNAC	1 cut(s)	597
Hpy99I	CGWCG	4 cut(s)	16, 19, 26, 202
HpyAV	CCTTC	3 cut(s)	478, 544, 1149
HpyCH4III	ACNGT	5 cut(s)	26, 464, 895, 981, 1038
HpyCH4IV	ACGT	5 cut(s)	14, 197, 776, 953, 1082
HpyCH4V	TGCA	8 cut(s)	183, 356, 428, 527, 605, 632, 1097, 1129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 708
HpyF3I	CTNAG	2 cut(s)	794, 1025
HpySE526I	ACGT	5 cut(s)	14, 197, 776, 953, 1082
Hsp92I	GRCGYC	2 cut(s)	14, 666
Hsp92II	CATG	5 cut(s)	82, 124, 149, 309, 1005
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	117, 678, 1158
LmnI	GCTCC	3 cut(s)	215, 259, 1046
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	3 cut(s)	412, 437, 619
MaeI	CTAG	3 cut(s)	852, 906, 1143
MaeII	ACGT	5 cut(s)	14, 197, 776, 953, 1082
MaeIII	GTNAC	5 cut(s)	67, 91, 283, 568, 683
MalI	GATC	3 cut(s)	119, 680, 1160
MbiI	CCGCTC	1 cut(s)	804
MboI	GATC	3 cut(s)	117, 678, 1158
MboII	GAAGA	2 cut(s)	127, 152
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	1158
MhlI	GDGCHC	2 cut(s)	623, 949
MluCI	AATT	4 cut(s)	534, 842, 911, 930
MmeI	TCCRAC	2 cut(s)	373, 1127
MnlI	CCTC	8 cut(s)	310, 332, 379, 490, 493, 507, 510, 1126
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	4 cut(s)	221, 419, 443, 732
MslI	CAYNNNNRTG	3 cut(s)	125, 965, 1006
MspI	CCGG	3 cut(s)	72, 213, 248
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 708
NdeII	GATC	3 cut(s)	117, 678, 1158
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	5 cut(s)	82, 124, 149, 309, 1005
NlaIV	GGNNCC	6 cut(s)	584, 621, 831, 1066, 1137, 1160
NmuCI	GTSAC	3 cut(s)	67, 91, 568
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	75, 189, 244
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	7, 41
PpuMI	RGGWCCY	1 cut(s)	1136
PscI	ACATGT	1 cut(s)	305
Psp1406I	AACGTT	3 cut(s)	776, 953, 1082
Psp5II	RGGWCCY	1 cut(s)	1136
PspEI	GGTNACC	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	1029
PspN4I	GGNNCC	6 cut(s)	584, 621, 831, 1066, 1137, 1160
PspOMI	GGGCCC	1 cut(s)	619
PspPI	GGNCC	5 cut(s)	26, 319, 619, 620, 1136
PspPPI	RGGWCCY	1 cut(s)	1136
PstNI	CAGNNNCTG	2 cut(s)	579, 611
PsuI	RGATCY	1 cut(s)	1158
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	3 cut(s)	125, 965, 1006
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	221, 419, 443, 732
SatI	GCNGC	2 cut(s)	6, 40
Sau3AI	GATC	3 cut(s)	117, 678, 1158
Sau96I	GGNCC	5 cut(s)	26, 319, 619, 620, 1136
ScaI	AGTACT	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	623, 949
SfaNI	GCATC	3 cut(s)	412, 437, 619
SfcI	CTRYAG	3 cut(s)	107, 460, 894
SinI	GGWCC	2 cut(s)	26, 1136
SmiMI	CAYNNNNRTG	3 cut(s)	125, 965, 1006
SmlI	CTYRAG	3 cut(s)	226, 323, 799
SmoI	CTYRAG	3 cut(s)	226, 323, 799
Sse9I	AATT	4 cut(s)	534, 842, 911, 930
SsiI	CCGC	5 cut(s)	6, 29, 210, 804, 1022
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	3 cut(s)	852, 906, 1143
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	5 cut(s)	26, 464, 895, 981, 1038
TaiI	ACGT	5 cut(s)	17, 200, 779, 956, 1085
TaqI	TCGA	3 cut(s)	21, 187, 890
TasI	AATT	4 cut(s)	534, 842, 911, 930
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	75, 189, 244
Tru1I	TTAA	4 cut(s)	221, 419, 443, 732
Tru9I	TTAA	4 cut(s)	221, 419, 443, 732
TscAI	CASTG	2 cut(s)	888, 1043
TseFI	GTSAC	3 cut(s)	67, 91, 568
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	3 cut(s)	67, 91, 568
TspDTI	ATGAA	2 cut(s)	907, 1004
TspGWI	ACGGA	2 cut(s)	246, 1098
TspRI	CASTG	2 cut(s)	888, 1043
Van91I	CCANNNNNTGG	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	26, 1136
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	979
XspI	CTAG	3 cut(s)	852, 906, 1143
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.