Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

30122778 .. 30128169

Gene Structure 5392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCCGAAACGACGTCGCTCCACGGCCCGCCGCGAGAGCCCAGCAGCAAGCTGTGGAAAGGGGTTTTCGCCGTCACCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTACAGGAGAAGATCATGAGAGTGCCTTATGGGGAAGACCACGCCTTTTTCAAGTACTCGCTGTTTCTGGTTTTCTGCAACCGAATCATGACGTCGGCGGTCTCCGCCGGAGCTTTGATTTCGAGTAAAAAGGACTTGAATCCGGTGGCTCCGATTTACAAATACGGCCTTGTGTCTGTTACCAATATACTAACCACTACTTGTCAGTATGAGGCACTCAAGTATGTGAGCTTTCCTGTTCAAACACTTGCCAAGTGTGCCAAGATGATTCCTGTTATGATTTGGGGTACTATCATTATGCAAAAGAAATACAAGGGACGCGACTATTTACTTGCTTTTCTAGTTACAGTTGGCTGTTCAATATTTATACTATATCCGGCAGGGTCTGACTTGGGTCCAAATGATGCATTCGGTAGAGCAAGAGAAAATACTATATGGGGCGTCTCTCTTATGATCGGTTATCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTCAAAGGTTATGATATGGAGATACATAATCAAATATTCTACACAACGTTCTGTTCTTGTGTTCTTAGTTTGACTGGTCTTATATTACAAGCACAACTGCTTCCAGCAATACAATTTGTTGCTAGCCACAATGATTGTTTCTTTGACATCGCACTGCTTTCCACTGTAGCAACAGCAAGCCAATTTTTCATTTCTTACACAATTCGCACATTTGGTGCGCTAACATTTGCAACTATAATGACCACAAGACAGTTGGTCAGCATTATGCTATCATGTGTGTGGTTTCATCACCCGCTTAGCTTGGAACAGTGCATTGGAGCTGTGATTGTCTTTGGTTCCCTATATGCAAAAACATTTATGAGAAATGCAACTCCGAAGCTGTCCCCATCTGACAATGAGCAGAATGGAGCGTCTAGCCCAGTGAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

351

Amino Acids

38.69

Weight (kDa)

8.86

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	21 - 268	2.4e-52	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	17, 206
AccII	CGCG	2 cut(s)	34, 432
AciI	CCGC	5 cut(s)	29, 32, 209, 216, 908
AclI	AACGTT	1 cut(s)	662
AclWI	GGATC	2 cut(s)	1039, 1052
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	3 cut(s)	14, 203, 552
AfaI	GTAC	2 cut(s)	167, 400
AfiI	CCNNNNNNNGG	2 cut(s)	1039, 1040
AgsI	TTSAA	5 cut(s)	163, 250, 353, 471, 619
AhdI	GACNNNNNGTC	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AluBI	AGCT	6 cut(s)	52, 224, 342, 915, 935, 994
AluI	AGCT	6 cut(s)	52, 224, 342, 915, 935, 994
Alw26I	GTCTC	2 cut(s)	217, 559
AlwI	GGATC	2 cut(s)	1039, 1052
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	3 cut(s)	3, 25, 277
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	26, 506
AsuHPI	GGTGA	3 cut(s)	67, 91, 896
AsuNHI	GCTAGC	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	1044
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	2 cut(s)	578, 1009
BceAI	ACGGC	4 cut(s)	40, 56, 121, 292
BcoDI	GTCTC	2 cut(s)	217, 559
BfaI	CTAG	3 cut(s)	452, 738, 1029
BfmI	CTRYAG	2 cut(s)	113, 780
BisI	GCNGC	2 cut(s)	32, 46
BlpI	GCTNAGC	1 cut(s)	911
BlsI	GCNGC	2 cut(s)	33, 47
BmcAI	AGTACT	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	506
BmeRI	GACNNNNNGTC	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	26, 506
BmiI	GGNNCC	4 cut(s)	261, 507, 952, 1046
BmrI	ACTGGG	1 cut(s)	1028
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	1028
BoxI	GACNNNNGTC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	314
BsaHI	GRCGYC	3 cut(s)	14, 203, 552
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	2 cut(s)	77, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	1039, 1040
Bse1I	ACTGG	2 cut(s)	694, 1034
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	1039, 1040
BseNI	ACTGG	2 cut(s)	694, 1034
BseXI	GCAGC	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	34, 432
BshFI	GGCC	3 cut(s)	5, 27, 279
BsiSI	CCGG	4 cut(s)	78, 219, 254, 488
BslFI	GGGAC	2 cut(s)	441, 982
BslI	CCNNNNNNNGG	2 cut(s)	1039, 1040
BsmAI	GTCTC	2 cut(s)	217, 559
BsmBI	CGTCTC	1 cut(s)	559
BsmFI	GGGAC	2 cut(s)	441, 982
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	3 cut(s)	5, 27, 279
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	123, 564, 1044
Bsp1720I	GCTNAGC	1 cut(s)	911
BspACI	CCGC	5 cut(s)	29, 32, 209, 216, 908
BspANI	GGCC	3 cut(s)	5, 27, 279
BspFNI	CGCG	2 cut(s)	34, 432
BspHI	TCATGA	3 cut(s)	84, 126, 198
BspLI	GGNNCC	4 cut(s)	261, 507, 952, 1046
BspOI	GCTAGC	1 cut(s)	741
BspPI	GGATC	2 cut(s)	1039, 1052
BspTNI	GGTCTC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	694, 1034
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	123, 564, 1044
BssNI	GRCGYC	3 cut(s)	14, 203, 552
Bst4CI	ACNGT	4 cut(s)	460, 781, 867, 924
BstACI	GRCGYC	3 cut(s)	14, 203, 552
BstC8I	GCNNGC	4 cut(s)	29, 50, 739, 793
BstDEI	CTNAG	2 cut(s)	680, 911
BstDSI	CCRYGG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	34, 432
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	3 cut(s)	126, 567, 1047
BstMAI	GTCTC	2 cut(s)	217, 559
BstMBI	GATC	3 cut(s)	123, 564, 1044
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 215, 368, 594
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	113, 780
BstUI	CGCG	2 cut(s)	34, 432
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	1044
BstYI	RGATCY	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	5, 27, 279
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	4 cut(s)	767, 777, 929, 1041
Cac8I	GCNNGC	4 cut(s)	29, 50, 739, 793
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	3 cut(s)	84, 126, 198
CfoI	GCGC	1 cut(s)	835
Cfr13I	GGNCC	2 cut(s)	26, 506
CseI	GACGC	3 cut(s)	438, 541, 1014
Csp6I	GTAC	2 cut(s)	166, 399
CspCI	CAANNNNNGTGG	2 cut(s)	731, 766
CviAII	CATG	4 cut(s)	85, 127, 199, 888
CviQI	GTAC	2 cut(s)	166, 399
DdeI	CTNAG	2 cut(s)	680, 911
DpnI	GATC	3 cut(s)	125, 566, 1046
DpnII	GATC	3 cut(s)	123, 564, 1044
DriI	GACNNNNNGTC	1 cut(s)	869
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	869
EciI	GGCGGA	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	4 cut(s)	88, 130, 202, 891
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	441, 982
FatI	CATG	4 cut(s)	84, 126, 198, 887
FauI	CCCGC	2 cut(s)	36, 915
Fnu4HI	GCNGC	2 cut(s)	32, 46
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	32, 46
FspBI	CTAG	3 cut(s)	452, 738, 1029
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	2 cut(s)	32, 46
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	5, 27, 279
HapII	CCGG	4 cut(s)	78, 219, 254, 488
HgaI	GACGC	3 cut(s)	438, 541, 1014
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	3 cut(s)	14, 203, 552
Hin1II	CATG	4 cut(s)	88, 130, 202, 891
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HinfI	GANTC	4 cut(s)	81, 195, 250, 379
HpaII	CCGG	4 cut(s)	78, 219, 254, 488
HphI	GGTGA	3 cut(s)	67, 91, 896
Hpy188I	TCNGA	4 cut(s)	264, 499, 990, 1006
Hpy188III	TCNNGA	3 cut(s)	85, 127, 199
Hpy99I	CGWCG	3 cut(s)	16, 19, 208
HpyAV	CCTTC	1 cut(s)	1033
HpyCH4III	ACNGT	4 cut(s)	460, 781, 867, 924
HpyCH4IV	ACGT	3 cut(s)	14, 203, 662
HpyCH4V	TGCA	7 cut(s)	189, 412, 518, 845, 927, 962, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 215, 368, 594
HpyF3I	CTNAG	2 cut(s)	680, 911
HpySE526I	ACGT	3 cut(s)	14, 203, 662
Hsp92I	GRCGYC	3 cut(s)	14, 203, 552
Hsp92II	CATG	4 cut(s)	88, 130, 202, 891
HspAI	GCGC	1 cut(s)	833
Kzo9I	GATC	3 cut(s)	123, 564, 1044
LmnI	GCTCC	5 cut(s)	24, 221, 265, 932, 1022
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	452, 738, 1029
MaeII	ACGT	3 cut(s)	14, 203, 662
MaeIII	GTNAC	4 cut(s)	73, 97, 289, 454
MalI	GATC	3 cut(s)	125, 566, 1046
MboI	GATC	3 cut(s)	123, 564, 1044
MboII	GAAGA	2 cut(s)	133, 158
MflI	RGATCY	1 cut(s)	1044
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	728, 797, 816
MnlI	CCTC	1 cut(s)	316
Mph1103I	ATGCAT	1 cut(s)	520
MslI	CAYNNNNRTG	2 cut(s)	131, 892
MspI	CCGG	4 cut(s)	78, 219, 254, 488
Mva1269I	GAATGC	1 cut(s)	518
MvnI	CGCG	2 cut(s)	34, 432
MwoI	GCNNNNNNNGC	4 cut(s)	37, 215, 368, 594
NdeII	GATC	3 cut(s)	123, 564, 1044
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	4 cut(s)	88, 130, 202, 891
NlaIV	GGNNCC	4 cut(s)	261, 507, 952, 1046
NmuCI	GTSAC	2 cut(s)	73, 97
NsiI	ATGCAT	1 cut(s)	520
PagI	TCATGA	3 cut(s)	84, 126, 198
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	81, 195, 250, 379
PkrI	GCNGC	2 cut(s)	33, 47
PshAI	GACNNNNGTC	1 cut(s)	504
Psp1406I	AACGTT	1 cut(s)	662
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	261, 507, 952, 1046
PspPI	GGNCC	2 cut(s)	26, 506
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	1044
RsaI	GTAC	2 cut(s)	167, 400
RsaNI	GTAC	2 cut(s)	166, 399
RseI	CAYNNNNRTG	2 cut(s)	131, 892
SatI	GCNGC	2 cut(s)	32, 46
Sau3AI	GATC	3 cut(s)	123, 564, 1044
Sau96I	GGNCC	2 cut(s)	26, 506
ScaI	AGTACT	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	2 cut(s)	113, 780
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	131, 892
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	728, 797, 816
SsiI	CCGC	5 cut(s)	29, 32, 209, 216, 908
SspI	AATATT	2 cut(s)	474, 651
SspMI	CTAG	3 cut(s)	452, 738, 1029
TaaI	ACNGT	4 cut(s)	460, 781, 867, 924
TaiI	ACGT	3 cut(s)	17, 206, 665
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	728, 797, 816
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	4 cut(s)	81, 195, 250, 379
TscAI	CASTG	4 cut(s)	774, 784, 929, 1041
TseFI	GTSAC	2 cut(s)	73, 97
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	2 cut(s)	73, 97
TspDTI	ATGAA	2 cut(s)	793, 890
TspRI	CASTG	4 cut(s)	774, 784, 929, 1041
VpaK11BI	GGWCC	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
XspI	CTAG	3 cut(s)	452, 738, 1029
ZraI	GACGTC	2 cut(s)	15, 204
ZrmI	AGTACT	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.