Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

1847487 .. 1847842

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1008500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTCGAAACGACGCTGTTGTCGGGCGCTCCGCAGCCGAGCAAGCTGTGGAAATGGGTTTTTGCAGTGGCCGGAATCATGACCATGCTCGTCACCTACGGCGTTCTCCAGGAGAAGATCATGAGAGTGCCGTACGACGACGACAAGGTGTTTTTCAAGTACTCGCTTTTCCTCGTCTTCTGCAACCGCATCACGACGTCGGCGGTCTTTACCAGAGTTTTGTGGGCCAGAAAGAAGGCTCTGGATTCTGTTGCTCCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

9.66

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AatII	GACGTC	1 cut(s)	200
AciI	CCGC	3 cut(s)	32, 187, 203
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	134, 161
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	2 cut(s)	69, 225
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	115, 115
BciT130I	CCWGG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	92, 240
BsaHI	GRCGYC	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	2 cut(s)	71, 227
BsiSI	CCGG	1 cut(s)	72
BsiWI	CGTACG	1 cut(s)	132
BsnI	GGCC	2 cut(s)	71, 227
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	32, 187, 203
BspANI	GGCC	2 cut(s)	71, 227
BspHI	TCATGA	2 cut(s)	78, 120
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	71, 227
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	133, 160
CviAII	CATG	3 cut(s)	79, 85, 121
CviJI	RGCY	5 cut(s)	37, 46, 71, 227, 239
CviKI_1	RGCY	5 cut(s)	37, 46, 71, 227, 239
CviQI	GTAC	2 cut(s)	133, 160
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	82, 88, 124
FaiI	YATR	3 cut(s)	80, 86, 122
FatI	CATG	3 cut(s)	78, 84, 120
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	92, 240
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	71, 227
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	82, 88, 124
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	75, 245
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	79, 121, 193, 242
Hpy99I	CGWCG	5 cut(s)	16, 140, 143, 199, 202
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	65, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	82, 88, 124
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	34, 259
LpnPI	CCDG	6 cut(s)	85, 95, 122, 226, 227, 241
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	127, 169
MnlI	CCTC	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	83, 125
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	82, 88, 124
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	91
PagI	TCATGA	2 cut(s)	78, 120
PfeI	GAWTC	2 cut(s)	75, 245
Pfl23II	CGTACG	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspLI	CGTACG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	225
RsaI	GTAC	2 cut(s)	134, 161
RsaNI	GTAC	2 cut(s)	133, 160
RseI	CAYNNNNRTG	2 cut(s)	83, 125
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	4 cut(s)	48, 98, 150, 200
SfaNI	GCATC	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	83, 125
SsiI	CCGC	3 cut(s)	32, 187, 203
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	6
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	75, 245
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.