Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Forward (+)

5765319 .. 5771197

Gene Structure 5879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G085700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGAAACGGCGCCGTTATCGATTGTTACGCAGCCGAGCAAGCTATGGAAGGGGGTTTTCGCCGTGGCCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTCCAGGAAAAGATCATGAGAGTCCCGTACGGGGACGACAAGGCGTTTTTCAGGTACTCGTTGTTTCTCGTCTTCTGCAATCGCATTGCGACGTCGGCGATCTCCGCCGGAGCCTTGTTGGCGAGCAAGAAGGCTTTGGATCCCGTTGCTCCGGTCTACAAGTACTCCCTTGTATCGGTTTCTAACATATTAACCACTACATGTCAGTATGAGGCTCTCAAATATGTCAGCTTTCCTATTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTGATGGTTTGGGGCACTATCATTATGCAAAAGAAATACAAGGGACAGGACTATTTGTTGGCATTTCTAGTGACAGTGGGCTGTTCAATATTTATTTTATATCCGGCAGGATCTTCCGAGATTGGTCCATCTGATATATATGGTAGAGGAAGAGAAAATACTGTTTGGGGCATTTCCCTTATGATTGGTTATCTTGGGTTTGATGGCTTTACAAGCACGTTCCAAGATAAACTATTTAAAGGCTATGATATGGAGATACACAATCAAATATTTTACACTGCATTCTGTTCTTGTGTTCTCAGCTTGACAGGTCTTATATTACAAGGACAGTTGCTTCCAGCAATCCACTTTGTTTCTATCCACAATGATTGTTTCTTTGACATTGCATTGCTTTCCACTGTAGCAACAGCTAGCCAATTTTTCATTTCTTATACGATTCGCACATTTGGTGCTCTCACATTTGCCACTATAATGACCACAAGACAGTTGGTCAGCATTATGCTATCATGCTTGTGGTTTTCACACCCCCTTAGCAGGGAACAATGGATTGGAGCTGTCGTAGTCTTTGGTACCCTCTATGCAAAAAGCTTCCTGAGAAGTGCACCAAAGCCTTCACCTTCCCAACAAATGCAGAATGGAGCTTCTCTTCCAGTGAAGGGGAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

349

Amino Acids

38.37

Weight (kDa)

9.16

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	13, 947
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	3 cut(s)	239, 252, 496
AcoI	YGGCCR	2 cut(s)	3, 69
AcyI	GRCGYC	2 cut(s)	14, 197
AfaI	GTAC	4 cut(s)	134, 161, 269, 949
AfiI	CCNNNNNNNGG	5 cut(s)	136, 280, 912, 913, 1034
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	347, 465
AhdI	GACNNNNNGTC	1 cut(s)	866
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	909, 941
AluBI	AGCT	7 cut(s)	46, 336, 681, 788, 932, 966, 1019
AluI	AGCT	7 cut(s)	46, 336, 681, 788, 932, 966, 1019
Alw21I	GWGCWC	2 cut(s)	832, 982
Alw44I	GTGCAC	1 cut(s)	978
AlwI	GGATC	3 cut(s)	239, 252, 496
AoxI	GGCC	2 cut(s)	3, 69
ApaLI	GTGCAC	1 cut(s)	978
ApeKI	GCWGC	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	85, 984
AsuNHI	GCTAGC	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	2 cut(s)	395, 982
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	13, 947
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	832, 982
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	376, 514, 575
BceAI	ACGGC	3 cut(s)	27, 50, 115
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	446, 789
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	17
BglI	GCCNNNNNGGC	2 cut(s)	11, 224
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	503
BmeRI	GACNNNNNGTC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	5 cut(s)	15, 217, 246, 949, 1040
BmrFI	CCNGG	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	908
Bsa29I	ATCGAT	1 cut(s)	23
BsaHI	GRCGYC	2 cut(s)	14, 197
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 921, 951
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 280, 912, 913, 1034
Bse1I	ACTGG	1 cut(s)	1028
Bse3DI	GCAATG	3 cut(s)	189, 759, 764
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	5 cut(s)	136, 280, 912, 913, 1034
BseMI	GCAATG	3 cut(s)	189, 759, 764
BseMII	CTCAG	2 cut(s)	691, 962
BseNI	ACTGG	1 cut(s)	1028
BseSI	GKGCMC	2 cut(s)	395, 982
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	2 cut(s)	5, 71
BshNI	GGYRCC	2 cut(s)	13, 947
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	832, 982
BsiSI	CCGG	4 cut(s)	72, 213, 257, 482
BsiWI	CGTACG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	113, 152, 435
BslI	CCNNNNNNNGG	5 cut(s)	136, 280, 912, 913, 1034
BsmFI	GGGAC	3 cut(s)	113, 152, 435
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	5, 71
Bsp1286I	GDGCHC	3 cut(s)	395, 832, 982
Bsp143I	GATC	4 cut(s)	117, 204, 244, 488
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	5, 71
BspCNI	CTCAG	2 cut(s)	690, 963
BspDI	ATCGAT	1 cut(s)	23
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	5 cut(s)	15, 217, 246, 949, 1040
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	3 cut(s)	239, 252, 496
BspT107I	GGYRCC	2 cut(s)	13, 947
BsrDI	GCAATG	3 cut(s)	189, 759, 764
BsrI	ACTGG	1 cut(s)	1028
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	4 cut(s)	117, 204, 244, 488
BssNI	GRCGYC	2 cut(s)	14, 197
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	5 cut(s)	454, 541, 708, 778, 864
Bst6I	CTCTTC	2 cut(s)	523, 1029
BstACI	GRCGYC	2 cut(s)	14, 197
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	44, 229, 790
BstDEI	CTNAG	3 cut(s)	677, 908, 971
BstDSI	CCRYGG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	120, 207, 247, 491
BstMBI	GATC	4 cut(s)	117, 204, 244, 488
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 43, 200, 209, 224, 362, 591
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	2 cut(s)	395, 982
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	244, 488
BstYI	RGATCY	2 cut(s)	244, 488
Bsu15I	ATCGAT	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	5, 71
BsuTUI	ATCGAT	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	459, 654, 774, 1035
Cac8I	GCNNGC	3 cut(s)	44, 229, 790
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	133, 160, 268, 948
CspCI	CAANNNNNGTGG	2 cut(s)	728, 763
CviAII	CATG	4 cut(s)	79, 121, 306, 885
CviQI	GTAC	4 cut(s)	133, 160, 268, 948
DdeI	CTNAG	3 cut(s)	677, 908, 971
DinI	GGCGCC	1 cut(s)	15
DpnI	GATC	4 cut(s)	119, 206, 246, 490
DpnII	GATC	4 cut(s)	117, 204, 244, 488
DraI	TTTAAA	1 cut(s)	616
DriI	GACNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	2 cut(s)	3, 69
Eam1104I	CTCTTC	2 cut(s)	523, 1029
Eam1105I	GACNNNNNGTC	1 cut(s)	866
EarI	CTCTTC	2 cut(s)	523, 1029
EciI	GGCGGA	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	15
EheI	GGCGCC	1 cut(s)	15
FaeI	CATG	4 cut(s)	82, 124, 309, 888
FaqI	GGGAC	3 cut(s)	113, 152, 435
FatI	CATG	4 cut(s)	78, 120, 305, 884
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	446, 789
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	5, 71
HapII	CCGG	4 cut(s)	72, 213, 257, 482
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	2 cut(s)	14, 197
Hin1II	CATG	4 cut(s)	82, 124, 309, 888
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	3 cut(s)	75, 126, 814
HpaII	CCGG	4 cut(s)	72, 213, 257, 482
HphI	GGTGA	2 cut(s)	85, 984
Hpy166II	GTNNAC	2 cut(s)	262, 980
Hpy188I	TCNGA	2 cut(s)	496, 511
Hpy188III	TCNNGA	3 cut(s)	79, 121, 970
Hpy8I	GTNNAC	2 cut(s)	262, 980
Hpy99I	CGWCG	2 cut(s)	199, 202
HpyAV	CCTTC	5 cut(s)	46, 229, 999, 1005, 1027
HpyCH4III	ACNGT	5 cut(s)	454, 541, 708, 778, 864
HpyCH4IV	ACGT	2 cut(s)	197, 596
HpyCH4V	TGCA	8 cut(s)	183, 356, 406, 659, 764, 959, 980, 1009
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 43, 200, 209, 224, 362, 591
HpyF3I	CTNAG	3 cut(s)	677, 908, 971
HpySE526I	ACGT	2 cut(s)	197, 596
Hsp92I	GRCGYC	2 cut(s)	14, 197
Hsp92II	CATG	4 cut(s)	82, 124, 309, 888
HspAI	GCGC	1 cut(s)	14
KasI	GGCGCC	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	951
Kzo9I	GATC	4 cut(s)	117, 204, 244, 488
LmnI	GCTCC	4 cut(s)	215, 259, 929, 1016
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	446, 789
MaeII	ACGT	2 cut(s)	197, 596
MaeIII	GTNAC	3 cut(s)	28, 91, 448
MalI	GATC	4 cut(s)	119, 206, 246, 490
MboI	GATC	4 cut(s)	117, 204, 244, 488
MboII	GAAGA	4 cut(s)	169, 483, 540, 1016
MflI	RGATCY	2 cut(s)	244, 488
MhlI	GDGCHC	3 cut(s)	395, 832, 982
MluCI	AATT	1 cut(s)	794
Mly113I	GGCGCC	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	310, 518, 962
MseI	TTAA	2 cut(s)	296, 615
MslI	CAYNNNNRTG	2 cut(s)	848, 889
MspI	CCGG	4 cut(s)	72, 213, 257, 482
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	7 cut(s)	11, 43, 200, 209, 224, 362, 591
NarI	GGCGCC	1 cut(s)	14
NdeII	GATC	4 cut(s)	117, 204, 244, 488
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	4 cut(s)	82, 124, 309, 888
NlaIV	GGNNCC	5 cut(s)	15, 217, 246, 949, 1040
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	91, 448
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	75, 814
Pfl23II	CGTACG	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	134
PscI	ACATGT	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	5 cut(s)	15, 217, 246, 949, 1040
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	244, 488
RsaI	GTAC	4 cut(s)	134, 161, 269, 949
RsaNI	GTAC	4 cut(s)	133, 160, 268, 948
RseI	CAYNNNNRTG	2 cut(s)	848, 889
SaqAI	TTAA	2 cut(s)	296, 615
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	4 cut(s)	117, 204, 244, 488
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	3 cut(s)	395, 832, 982
SfcI	CTRYAG	1 cut(s)	777
SfoI	GGCGCC	1 cut(s)	15
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	848, 889
Sse9I	AATT	1 cut(s)	794
SsiI	CCGC	1 cut(s)	210
SspDI	GGCGCC	1 cut(s)	13
SspI	AATATT	2 cut(s)	468, 648
SspMI	CTAG	2 cut(s)	446, 789
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	5 cut(s)	454, 541, 708, 778, 864
TaiI	ACGT	2 cut(s)	200, 599
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	794
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	75, 814
Tru1I	TTAA	2 cut(s)	296, 615
Tru9I	TTAA	2 cut(s)	296, 615
TscAI	CASTG	4 cut(s)	459, 661, 781, 1035
TseFI	GTSAC	2 cut(s)	91, 448
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	91, 448
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	4 cut(s)	459, 661, 781, 1035
VneI	GTGCAC	1 cut(s)	978
VpaK11BI	GGWCC	1 cut(s)	503
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	2 cut(s)	446, 789
ZraI	GACGTC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.