Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

24070049 .. 24073086

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGAGCCAGAATTAGTAAACGGAGGAGTGAAAGAGAACAAATTATGGAAAGGTGTATTCGCAGTTTCCGGCATTATGTCTACTCTTGTAATCTACGGTGTTCTTCAGGAGAAGATAATGAGAGTTCCTTATGGAGTGAACAAGGAGTTTTTTAAGCACTCTTTGTTTCTTGTTTTCTGCAATCGGCTTACTACATCAGCTGTCTCTGCTGGTGCTTTACTGGCAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCTTAACTACAACATGTCAATATGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTGCAAAGTGTGCCAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAGTATAAGGGCTTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATTCTCTTTCCGGCAGGAGATGATGTTAGTCCATACAATAAGGGAAGGGAAAATACTGTTTGGGGTGTTTCCCTTATGGCTGGTTATCTTGGGTTTGACGGCTTTACAAGTACATTCCAAGACAAGCTCTTTAAAGGATATAACATGGAGATACATAACCAAATATTCTACACAACACTTTGTTCTTGTGTTTTGAGTTTCACTGGACTTATATTGCAAGGGCATCTACTACCAGCTGTAGATTTTGTTTCTCTGCATAGGGATTGTTTACTCGACATCGCTCTGCTTTCCACAGTTGCAACAGCGAGCCAGTTCTTCATTTCTTACACAATTAGGACATTTGGTGCTCTAACATTTGCTGCAATCATGACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCATCCTCTTAGCTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGGTCTTTATATGCGAAAAACTTACTGAACAACAAGAAAAATTCACAAACGCAACCACCACCTCCAGAACTTCCGCAGTACGAAAAGGTTGAGAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

344

Amino Acids

38.22

Weight (kDa)

8.8

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	19 - 319	5.2e-85	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	1007
AclWI	GGATC	3 cut(s)	239, 252, 925
AcsI	RAATTY	1 cut(s)	973
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	583, 1013
AflIII	ACRYGT	1 cut(s)	305
AluBI	AGCT	8 cut(s)	203, 254, 336, 598, 707, 853, 900, 1029
AluI	AGCT	8 cut(s)	203, 254, 336, 598, 707, 853, 900, 1029
Alw21I	GWGCWC	2 cut(s)	820, 1031
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	3 cut(s)	239, 252, 925
ApeKI	GCWGC	2 cut(s)	459, 830
ApoI	RAATTY	1 cut(s)	973
AsuHPI	GGTGA	1 cut(s)	460
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	1031
BarI	GAAGNNNNNNTAC	4 cut(s)	320, 352, 508, 540
Bbv12I	GWGCWC	2 cut(s)	820, 1031
BbvI	GCAGC	2 cut(s)	446, 817
BceAI	ACGGC	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	211
BfmI	CTRYAG	2 cut(s)	249, 708
BisI	GCNGC	2 cut(s)	460, 831
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	461, 832
BmiI	GGNNCC	1 cut(s)	246
BmsI	GCATC	2 cut(s)	703, 870
BpmI	CTGGAG	1 cut(s)	981
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse1I	ACTGG	4 cut(s)	228, 377, 679, 781
Bse3DI	GCAATG	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	1 cut(s)	889
BseMI	GCAATG	1 cut(s)	914
BseNI	ACTGG	4 cut(s)	228, 377, 679, 781
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	446, 817
BseYI	CCCAGC	1 cut(s)	900
BsiHKAI	GWGCWC	2 cut(s)	820, 1031
BsiSI	CCGG	3 cut(s)	72, 257, 482
BsmAI	GTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	820, 1031
Bsp143I	GATC	2 cut(s)	244, 917
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	1007
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	239, 252, 925
BsrDI	GCAATG	1 cut(s)	914
BsrI	ACTGG	4 cut(s)	228, 377, 679, 781
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	2 cut(s)	244, 917
BssT1I	CCWWGG	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	101, 529, 766
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	4 cut(s)	229, 778, 855, 859
BstDEI	CTNAG	2 cut(s)	6, 896
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	889
BstKTI	GATC	2 cut(s)	247, 920
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	244, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 224, 362, 403
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	448
BstSFI	CTRYAG	2 cut(s)	249, 708
BstV1I	GCAGC	2 cut(s)	446, 817
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	889
BtsIMutI	CAGTG	2 cut(s)	288, 672
Cac8I	GCNNGC	4 cut(s)	229, 778, 855, 859
CciI	TCATGA	1 cut(s)	837
Csp6I	GTAC	2 cut(s)	582, 1012
CviAII	CATG	5 cut(s)	306, 616, 838, 865, 873
CviQI	GTAC	2 cut(s)	582, 1012
DdeI	CTNAG	2 cut(s)	6, 896
DpnI	GATC	2 cut(s)	246, 919
DpnII	GATC	2 cut(s)	244, 917
DraI	TTTAAA	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	1029
EcoO65I	GGTNACC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	878
EcoT38I	GRGCYC	1 cut(s)	1031
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	309, 619, 841, 868, 876
FatI	CATG	5 cut(s)	305, 615, 837, 864, 872
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	460, 831
FokI	GGATG	1 cut(s)	876
FriOI	GRGCYC	1 cut(s)	1031
Fsp4HI	GCNGC	2 cut(s)	460, 831
GluI	GCNGC	2 cut(s)	460, 831
GsaI	CCCAGC	1 cut(s)	904
GsuI	CTGGAG	1 cut(s)	981
HapII	CCGG	3 cut(s)	72, 257, 482
Hin1II	CATG	5 cut(s)	309, 619, 841, 868, 876
HpaII	CCGG	3 cut(s)	72, 257, 482
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	4 cut(s)	22, 84, 142, 740
Hpy188I	TCNGA	1 cut(s)	917
Hpy188III	TCNNGA	3 cut(s)	110, 838, 998
Hpy8I	GTNNAC	4 cut(s)	22, 84, 142, 740
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	3 cut(s)	101, 529, 766
HpyCH4V	TGCA	9 cut(s)	183, 356, 406, 688, 727, 770, 833, 857, 876
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 224, 362, 403
HpyF3I	CTNAG	2 cut(s)	6, 896
Hsp92II	CATG	5 cut(s)	309, 619, 841, 868, 876
Kzo9I	GATC	2 cut(s)	244, 917
LmnI	GCTCC	2 cut(s)	259, 904
Lsp1109I	GCAGC	2 cut(s)	446, 817
LweI	GCATC	2 cut(s)	703, 870
MaeIII	GTNAC	2 cut(s)	283, 448
MalI	GATC	2 cut(s)	246, 919
MboI	GATC	2 cut(s)	244, 917
MboII	GAAGA	4 cut(s)	98, 127, 421, 778
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	820, 1031
MluCI	AATT	4 cut(s)	14, 44, 801, 973
MnlI	CCTC	4 cut(s)	20, 310, 903, 1005
Mph1103I	ATGCAT	1 cut(s)	878
MseI	TTAA	4 cut(s)	156, 296, 603, 1033
MspA1I	CMGCKG	2 cut(s)	203, 707
MspI	CCGG	3 cut(s)	72, 257, 482
MwoI	GCNNNNNNNGC	4 cut(s)	209, 224, 362, 403
NdeII	GATC	2 cut(s)	244, 917
NlaIII	CATG	5 cut(s)	309, 619, 841, 868, 876
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	283, 448
NsiI	ATGCAT	1 cut(s)	878
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	837
PciI	ACATGT	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	461, 832
PscI	ACATGT	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	1031
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	900
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	203, 707
RsaI	GTAC	2 cut(s)	583, 1013
RsaNI	GTAC	2 cut(s)	582, 1012
SacI	GAGCTC	1 cut(s)	1031
SaqAI	TTAA	4 cut(s)	156, 296, 603, 1033
SatI	GCNGC	2 cut(s)	460, 831
Sau3AI	GATC	2 cut(s)	244, 917
SduI	GDGCHC	2 cut(s)	820, 1031
SfaNI	GCATC	2 cut(s)	703, 870
SfcI	CTRYAG	2 cut(s)	249, 708
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	14, 44, 801, 973
SsiI	CCGC	1 cut(s)	1007
SspI	AATATT	2 cut(s)	269, 636
SstI	GAGCTC	1 cut(s)	1031
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	3 cut(s)	101, 529, 766
TaqI	TCGA	1 cut(s)	744
TaqII	GACCGA	1 cut(s)	910
TasI	AATT	4 cut(s)	14, 44, 801, 973
TatI	WGTACW	1 cut(s)	581
Tru1I	TTAA	4 cut(s)	156, 296, 603, 1033
Tru9I	TTAA	4 cut(s)	156, 296, 603, 1033
TscAI	CASTG	2 cut(s)	288, 679
TseFI	GTSAC	2 cut(s)	283, 448
TseI	GCWGC	2 cut(s)	459, 830
Tsp45I	GTSAC	2 cut(s)	283, 448
TspDTI	ATGAA	1 cut(s)	778
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	288, 679
XapI	RAATTY	1 cut(s)	973
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.