Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

71201855 .. 71207630

Gene Structure 5776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG412000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCGAAACGACGTCGCTCGACGGTCCGCGAGAGCGCAGTAGGCTATGGAAAGGGGTTTTCGCCGTGACCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTACAGGAGAAGATCATGAGAGTGCCTTACGGGGAAGACCATGCCTTTTTCAAGTACTCATTGTTTCTGGTTCTCTGCAATCGAATCACAACGTCGGCGATTTCCGCCGGAGCTTTAATCTCAAGTAAAAAGGATTTGAATCCGGTAGCTCCGTTTTACAAATACGGCCTTGTATCAGTTACCAATATACTAACCACTACATGTCAGTATGAGGCCCTCAAGTATGTAAGCTTTCCTGTTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTTATGGTTTGGGGTACCATCATTATGCAAAAGAAATACAAGGGGCGTGACTATTTGTTTGCTTTTCTAGTTACAGTTGGCTGTTCAATATTTATACTATATCCGGCAGGGTCTGACTTGGGCCCAACTGATGCATTTGGTAGAGCAAGAGAAAATACTATGTGGGGCGTCTCTCTTATGATCGGTTACCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGCTATGATATGGAGATACACAATCAAATATTCTACACAACGTTCTGTTCTTGTGTTCTTAGCTTGAGCGGTAAGATCTTATTATTACTATTATTACTTTTCTGGTTGTTGCTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

244

Amino Acids

27.43

Weight (kDa)

9.05

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	19 - 227	9.5e-53	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	684
AccII	CGCG	1 cut(s)	31
AciI	CCGC	3 cut(s)	29, 210, 684
AclI	AACGTT	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	14, 546
AfaI	GTAC	2 cut(s)	161, 394
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	157, 244, 347, 465
AluBI	AGCT	4 cut(s)	218, 254, 336, 678
AluI	AGCT	4 cut(s)	218, 254, 336, 678
Alw26I	GTCTC	1 cut(s)	553
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	3, 271, 318, 499
ApaI	GGGCCC	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	4 cut(s)	26, 319, 499, 500
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	2 cut(s)	404, 572
BceAI	ACGGC	3 cut(s)	50, 115, 286
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	690
BmcAI	AGTACT	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	4 cut(s)	26, 319, 499, 500
BmiI	GGNNCC	2 cut(s)	394, 501
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	3 cut(s)	211, 308, 700
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	14, 546
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	2 cut(s)	71, 247
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	568
BseJI	GATNNNNATC	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	5, 273, 320, 501
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	4 cut(s)	72, 213, 248, 482
BsmAI	GTCTC	1 cut(s)	553
BsmBI	CGTCTC	1 cut(s)	553
BsnI	GGCC	4 cut(s)	5, 273, 320, 501
Bsp120I	GGGCCC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	117, 558, 690
BspACI	CCGC	3 cut(s)	29, 210, 684
BspANI	GGCC	4 cut(s)	5, 273, 320, 501
BspFNI	CGCG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	2 cut(s)	394, 501
BspT107I	GGYRCC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	117, 558, 690
BssNI	GRCGYC	2 cut(s)	14, 546
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	2 cut(s)	26, 454
BstACI	GRCGYC	2 cut(s)	14, 546
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	674
BstEII	GGTNACC	1 cut(s)	563
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	120, 561, 693
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	3 cut(s)	117, 558, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	4 cut(s)	5, 273, 320, 501
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	4 cut(s)	26, 319, 499, 500
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	160, 393
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	4 cut(s)	79, 121, 146, 306
CviQI	GTAC	2 cut(s)	160, 393
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	3 cut(s)	119, 560, 692
DpnII	GATC	3 cut(s)	117, 558, 690
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	553
FaeI	CATG	4 cut(s)	82, 124, 149, 309
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	4 cut(s)	78, 120, 145, 305
FriOI	GRGCYC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	38
HaeIII	GGCC	4 cut(s)	5, 273, 320, 501
HapII	CCGG	4 cut(s)	72, 213, 248, 482
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	14, 546
Hin1II	CATG	4 cut(s)	82, 124, 149, 309
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	3 cut(s)	75, 189, 244
HpaII	CCGG	4 cut(s)	72, 213, 248, 482
HphI	GGTGA	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	2 cut(s)	79, 121
Hpy99I	CGWCG	4 cut(s)	16, 19, 26, 202
HpyCH4III	ACNGT	2 cut(s)	26, 454
HpyCH4IV	ACGT	3 cut(s)	14, 197, 656
HpyCH4V	TGCA	4 cut(s)	183, 356, 406, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	3 cut(s)	14, 197, 656
Hsp92I	GRCGYC	2 cut(s)	14, 546
Hsp92II	CATG	4 cut(s)	82, 124, 149, 309
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	117, 558, 690
LmnI	GCTCC	2 cut(s)	215, 259
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	3 cut(s)	14, 197, 656
MaeIII	GTNAC	6 cut(s)	67, 91, 283, 425, 448, 563
MalI	GATC	3 cut(s)	119, 560, 692
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	3 cut(s)	117, 558, 690
MboII	GAAGA	2 cut(s)	127, 152
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	503
MnlI	CCTC	2 cut(s)	310, 332
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	221, 612
MslI	CAYNNNNRTG	2 cut(s)	125, 401
MspI	CCGG	4 cut(s)	72, 213, 248, 482
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
NdeII	GATC	3 cut(s)	117, 558, 690
NlaIII	CATG	4 cut(s)	82, 124, 149, 309
NlaIV	GGNNCC	2 cut(s)	394, 501
NmuCI	GTSAC	3 cut(s)	67, 91, 425
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	75, 189, 244
PscI	ACATGT	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	656
PspEI	GGTNACC	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	394, 501
PspOMI	GGGCCC	1 cut(s)	499
PspPI	GGNCC	4 cut(s)	26, 319, 499, 500
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	2 cut(s)	161, 394
RsaNI	GTAC	2 cut(s)	160, 393
RseI	CAYNNNNRTG	2 cut(s)	125, 401
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	221, 612
Sau3AI	GATC	3 cut(s)	117, 558, 690
Sau96I	GGNCC	4 cut(s)	26, 319, 499, 500
ScaI	AGTACT	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	125, 401
SmlI	CTYRAG	3 cut(s)	226, 323, 679
SmoI	CTYRAG	3 cut(s)	226, 323, 679
SsiI	CCGC	3 cut(s)	29, 210, 684
SspI	AATATT	2 cut(s)	468, 645
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	26, 454
TaiI	ACGT	3 cut(s)	17, 200, 659
TaqI	TCGA	2 cut(s)	21, 187
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	75, 189, 244
Tru1I	TTAA	2 cut(s)	221, 612
Tru9I	TTAA	2 cut(s)	221, 612
TseFI	GTSAC	3 cut(s)	67, 91, 425
Tsp45I	GTSAC	3 cut(s)	67, 91, 425
TspGWI	ACGGA	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	26
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.