Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Reverse (-)

69005269 .. 69011146

Gene Structure 5878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCCGAAACGACGTCGCTCGACGGTCCGCGAGAGCGCAGCAGGCTATGGAAAGGGGTTTTCGCCGTGACCGGAATCATGACCACGCTCGTCACCTACGGAGTTCTACAGGAGAAGATCATGAGAGTGCCTTACGGGGAAGACCATGCCTTTTTCAAGTACTCATTGTTTCTGGTTCTCTGCAATCGAATCACAACGTCGGCGATTTCCGCCGGAGCTTTAATCTCAAGTAAAAAGGCTTTGAATCCGGTAGCTCCGTTTTACAAATACGGCCTTGTATCAGTTACCAATATACTAACCACTACATGTCAGTATGAGGCCCTCAAGTATGTAAGCTTTCCTGTTCAAACACTTGCAAAATGTGCCAAGATGATACCTGTTATGGTTTGGGGTACCATCATTATGCAAAAGAAATACAAGGGGCGTGACTATTTGTTTGCTTTTCTAGTTACAGTTGGCTGTTCAATATTTATACTATATCCGGCAGGGTCTGACTTGGGCCCAACTGATGCATTTGGTAGAGCAAGAGAAAATACTATGTGGGGCGTCTCTCTTATGATCGGTTACCTTGGGTTTGATGGCTTTACAAGCACATTCCAAGACAAACTTTTTAAAGGTTATGATATGGAGATACACAATCAAATATTCTACACAACGTTCTGTTCTTGTGTTCTTAGCTTGAGCGGTCTCATATTACAAGGACAACTGGTTCCAGCAATACAATTTGTTTCTAGCCACAATGATTGTTTCTTTGACATCGCACTGCTTTCGACTGTAGCAACAGCTAGCCAATTTTTCATTTCTTACACAATTCGCACATTTGGTGCTCTAACGTTTGCCACTATAATGACCACAAGACAGGTAAATCATAACTCCCAAATAATCCTTGAATTTTCTCTTTTGTTTTTTCAAATATTGATGGTACTAATAACTGGGGTCTTCTGTTTGGTGCTGAAGTTGGTCAGCATTATGCTATCATGCGTATGGTTTCATCACCCGCTTAGCTGGGAACAGTGGATTGGAGCTGTGGTTGTCTTTGGTTCCCTATATGCAAAAACGTTTATGAGAAATGCAACTCCAAATCCGTCCCCGTCAGACAAAGTGCAGGATGGACCTTCTAGCCCAGTAAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

380

Amino Acids

42.31

Weight (kDa)

8.96

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	19 - 288	6.4e-65	UAA transporter family
UAA	PF08449	313 - 353	2e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	684
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	29, 210, 684, 998
AclI	AACGTT	3 cut(s)	656, 833, 1058
AclWI	GGATC	2 cut(s)	1129, 1142
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	1 cut(s)	974
AcyI	GRCGYC	2 cut(s)	14, 546
AfaI	GTAC	3 cut(s)	161, 394, 924
AfiI	CCNNNNNNNGG	2 cut(s)	1129, 1130
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	6 cut(s)	157, 244, 347, 465, 890, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	1002, 1034
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	7 cut(s)	218, 254, 336, 678, 785, 1005, 1025
AluI	AGCT	7 cut(s)	218, 254, 336, 678, 785, 1005, 1025
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	2 cut(s)	553, 692
AlwI	GGATC	2 cut(s)	1129, 1142
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	3, 271, 318, 499
ApaI	GGGCCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	890
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	5 cut(s)	26, 319, 499, 500, 1112
AsuHPI	GGTGA	2 cut(s)	85, 986
AsuNHI	GCTAGC	1 cut(s)	785
AvaII	GGWCC	2 cut(s)	26, 1112
BaeGI	GKGCMC	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	1134
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	147, 931
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	4 cut(s)	404, 572, 913, 1103
BceAI	ACGGC	2 cut(s)	50, 286
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BcoDI	GTCTC	2 cut(s)	553, 692
BfaI	CTAG	4 cut(s)	446, 732, 786, 1119
BfmI	CTRYAG	2 cut(s)	107, 774
BisI	GCNGC	1 cut(s)	40
BlpI	GCTNAGC	1 cut(s)	1001
BlsI	GCNGC	1 cut(s)	41
BmcAI	AGTACT	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	26, 1112
BmgT120I	GGNCC	5 cut(s)	26, 319, 499, 500, 1112
BmiI	GGNNCC	5 cut(s)	394, 501, 711, 1042, 1136
BmrI	ACTGGG	2 cut(s)	942, 1118
BmsI	GCATC	1 cut(s)	499
BmtI	GCTAGC	1 cut(s)	789
BmuI	ACTGGG	2 cut(s)	942, 1118
BpiI	GAAGAC	2 cut(s)	147, 931
Bpu1102I	GCTNAGC	1 cut(s)	1001
BpuEI	CTTGAG	3 cut(s)	211, 308, 700
BsaHI	GRCGYC	2 cut(s)	14, 546
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	2 cut(s)	71, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	1129, 1130
Bse1I	ACTGG	3 cut(s)	711, 937, 1124
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	1 cut(s)	1114
BseLI	CCNNNNNNNGG	2 cut(s)	1129, 1130
BseNI	ACTGG	3 cut(s)	711, 937, 1124
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	1124
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	5, 273, 320, 501
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	4 cut(s)	72, 213, 248, 482
BslFI	GGGAC	1 cut(s)	1072
BslI	CCNNNNNNNGG	2 cut(s)	1129, 1130
BsmAI	GTCTC	2 cut(s)	553, 692
BsmBI	CGTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	1072
BsnI	GGCC	4 cut(s)	5, 273, 320, 501
Bso31I	GGTCTC	1 cut(s)	692
Bsp120I	GGGCCC	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	503, 829
Bsp143I	GATC	3 cut(s)	117, 558, 1134
Bsp1720I	GCTNAGC	1 cut(s)	1001
BspACI	CCGC	4 cut(s)	29, 210, 684, 998
BspANI	GGCC	4 cut(s)	5, 273, 320, 501
BspFNI	CGCG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	5 cut(s)	394, 501, 711, 1042, 1136
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	1129, 1142
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	711, 937, 1124
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	117, 558, 1134
BssNI	GRCGYC	2 cut(s)	14, 546
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	4 cut(s)	26, 454, 775, 1014
BstACI	GRCGYC	2 cut(s)	14, 546
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	44, 787
BstDEI	CTNAG	2 cut(s)	674, 1001
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	1114
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	120, 561, 1137
BstMAI	GTCTC	2 cut(s)	553, 692
BstMBI	GATC	3 cut(s)	117, 558, 1134
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	563
BstSFI	CTRYAG	2 cut(s)	107, 774
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	2 cut(s)	147, 931
BstX2I	RGATCY	1 cut(s)	1134
BstYI	RGATCY	1 cut(s)	1134
BsuRI	GGCC	4 cut(s)	5, 273, 320, 501
BtgZI	GCGATG	1 cut(s)	742
BtsCI	GGATG	1 cut(s)	1114
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	761, 1019
Cac8I	GCNNGC	2 cut(s)	44, 787
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	5 cut(s)	26, 319, 499, 500, 1112
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	160, 393, 923
CspCI	CAANNNNNGTGG	2 cut(s)	725, 760
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	5 cut(s)	79, 121, 146, 306, 978
CviQI	GTAC	3 cut(s)	160, 393, 923
DdeI	CTNAG	2 cut(s)	674, 1001
DpnI	GATC	3 cut(s)	119, 560, 1136
DpnII	GATC	3 cut(s)	117, 558, 1134
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	26, 1112
Eco57I	CTGAAG	1 cut(s)	974
Eco91I	GGTNACC	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	553
FaeI	CATG	5 cut(s)	82, 124, 149, 309, 981
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	1072
FatI	CATG	5 cut(s)	78, 120, 145, 305, 977
FauI	CCCGC	1 cut(s)	1005
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	1121
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	4 cut(s)	446, 732, 786, 1119
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	40
GsaI	CCCAGC	1 cut(s)	1009
HaeIII	GGCC	4 cut(s)	5, 273, 320, 501
HapII	CCGG	4 cut(s)	72, 213, 248, 482
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	14, 546
Hin1II	CATG	5 cut(s)	82, 124, 149, 309, 981
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	3 cut(s)	75, 189, 244
HpaII	CCGG	4 cut(s)	72, 213, 248, 482
HphI	GGTGA	2 cut(s)	85, 986
Hpy188I	TCNGA	2 cut(s)	493, 1096
Hpy188III	TCNNGA	2 cut(s)	79, 121
Hpy99I	CGWCG	4 cut(s)	16, 19, 26, 202
HpyAV	CCTTC	1 cut(s)	1125
HpyCH4III	ACNGT	4 cut(s)	26, 454, 775, 1014
HpyCH4IV	ACGT	5 cut(s)	14, 197, 656, 833, 1058
HpyCH4V	TGCA	7 cut(s)	183, 356, 406, 512, 1052, 1073, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
HpyF3I	CTNAG	2 cut(s)	674, 1001
HpySE526I	ACGT	5 cut(s)	14, 197, 656, 833, 1058
Hsp92I	GRCGYC	2 cut(s)	14, 546
Hsp92II	CATG	5 cut(s)	82, 124, 149, 309, 981
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	117, 558, 1134
LmnI	GCTCC	3 cut(s)	215, 259, 1022
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	4 cut(s)	446, 732, 786, 1119
MaeII	ACGT	5 cut(s)	14, 197, 656, 833, 1058
MaeIII	GTNAC	6 cut(s)	67, 91, 283, 425, 448, 563
MalI	GATC	3 cut(s)	119, 560, 1136
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	3 cut(s)	117, 558, 1134
MboII	GAAGA	3 cut(s)	127, 152, 931
MflI	RGATCY	1 cut(s)	1134
MhlI	GDGCHC	2 cut(s)	503, 829
MluCI	AATT	4 cut(s)	722, 791, 810, 890
MnlI	CCTC	2 cut(s)	310, 332
Mph1103I	ATGCAT	1 cut(s)	514
MseI	TTAA	2 cut(s)	221, 612
MslI	CAYNNNNRTG	4 cut(s)	125, 401, 845, 982
MspI	CCGG	4 cut(s)	72, 213, 248, 482
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	43, 209, 362, 588
NdeII	GATC	3 cut(s)	117, 558, 1134
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	5 cut(s)	82, 124, 149, 309, 981
NlaIV	GGNNCC	5 cut(s)	394, 501, 711, 1042, 1136
NmuCI	GTSAC	3 cut(s)	67, 91, 425
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	75, 189, 244
PkrI	GCNGC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	305
Psp1406I	AACGTT	3 cut(s)	656, 833, 1058
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	1005
PspN4I	GGNNCC	5 cut(s)	394, 501, 711, 1042, 1136
PspOMI	GGGCCC	1 cut(s)	499
PspPI	GGNCC	5 cut(s)	26, 319, 499, 500, 1112
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	161, 394, 924
RsaNI	GTAC	3 cut(s)	160, 393, 923
RseI	CAYNNNNRTG	4 cut(s)	125, 401, 845, 982
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	221, 612
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	3 cut(s)	117, 558, 1134
Sau96I	GGNCC	5 cut(s)	26, 319, 499, 500, 1112
ScaI	AGTACT	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	503, 829
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	107, 774
SinI	GGWCC	2 cut(s)	26, 1112
SmiMI	CAYNNNNRTG	4 cut(s)	125, 401, 845, 982
SmlI	CTYRAG	3 cut(s)	226, 323, 679
SmoI	CTYRAG	3 cut(s)	226, 323, 679
Sse9I	AATT	4 cut(s)	722, 791, 810, 890
SsiI	CCGC	4 cut(s)	29, 210, 684, 998
SspI	AATATT	3 cut(s)	468, 645, 915
SspMI	CTAG	4 cut(s)	446, 732, 786, 1119
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	4 cut(s)	26, 454, 775, 1014
TaiI	ACGT	5 cut(s)	17, 200, 659, 836, 1061
TaqI	TCGA	3 cut(s)	21, 187, 770
TasI	AATT	4 cut(s)	722, 791, 810, 890
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	75, 189, 244
Tru1I	TTAA	2 cut(s)	221, 612
Tru9I	TTAA	2 cut(s)	221, 612
TscAI	CASTG	2 cut(s)	768, 1019
TseFI	GTSAC	3 cut(s)	67, 91, 425
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	3 cut(s)	67, 91, 425
TspDTI	ATGAA	2 cut(s)	787, 980
TspGWI	ACGGA	3 cut(s)	114, 246, 1074
TspRI	CASTG	2 cut(s)	768, 1019
VpaK11BI	GGWCC	2 cut(s)	26, 1112
XapI	RAATTY	1 cut(s)	890
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	4 cut(s)	446, 732, 786, 1119
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.