Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008570

Physical Location & Seq

Genomic Coordinates Forward (+)

6679914 .. 6684121

Gene Structure 4208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08280.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCCGAAACAACGTCGTTGCCGGGCGCTCCGCAGCCGAGCAAGCTGTGGAAAGGGGTTTTCGCGGTGGCCGGAATCATGACCACGCTCGTCACCTACGGCGTTCTCCAGGAGAAGATCATGAGAGTGCCTTACGGCGACGACAAGGCGTTTTTCAAGTACTCGCTTTTCCTCGTCTTCTGCAACCGCATCACGACGTCGGCCGTCTCCGCCGGAGTTTTGTGGGCCAGAAAGAAGGCACTGGATCCTGTGGCTCCGGTTTACAAGTACGGCCTCGTATCGATTTCAAACATACTAACCACTACATGTCAGTACGAGGCTCTCAAATACGTCAGCTTTCCGGTTCAAACGCTTGCGAAATGCGCCAAGATGATACCTGTGATGGTTTGGGGCACTATCATTATGCAAAAGAAATATAGTGTACCGCACTATTTTCTGGCATTTCTAGTGACAGTGGGCTGTTCAATATTCATTCTATATCCGGCAGGATCTGCTGACATTGGTCCATCTGATATATACGGAAGAGGAAGAGAAAATACCATTTGGGGCATTTCTCTTATGATTGGTTATCTTGGGTTTGACGGCTTTACAAGCACGTTCCAAGATAAGCTATTTAAGGGATATGATATGGAGATACACAATCAAATATTTTACACCACATTCTGTTCTTGTGTTCTCAGCATGACAGGTCTTCTACTACAAGGGCAACTTCTGCCAGCAATTCATTTTGTTGCTAGTCACAATGGTTGTTTTTTCGACATTGCATTGCTTTCCACTGTAGCAACAGCGAGCCAGTTTTTTATTTCTTACACAATTCGCACTTTTGGTGCTCTCACGTTTGCCACAATAATGACCACAAGACAGCTGGCCAGCATTATGTTGTCATGCTTGTGGTTTTCGCACCCCCTTAGCTGGGAACAGTGGATGGGAGCCGCTATTGTCTTTGGTTCCCTATATGCGAAAAGCTTCTTGAGAACGGATCCTTCACCTTCCCAACAAATTCAGAATGGAGCTTCGAGTCCTGTGAAGGGGATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

347

Amino Acids

38.18

Weight (kDa)

9.09

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46180 AT3G46180 AT5G59740
fragaria_vesca	FvH4_3g34850 FvH4_3g34850 FvH4_3g34850 FvH4_3g34850
malus_domestica	MD03G1100700.v1.1 MD05G1008500.v1.1 MD11G1114800.v1.1
prunus_persica	Prupe.6G085700_v2.0.a1
pyrus_communis	pycom03g08280 pycom11g09640
rosa_chinensis	RchiOBHm_Chr5g0062701
rosa_laevigata	RLG00000035573
rosa_multiflora	Rmu_ssc0000472.1_g000021
rosa_roxburghii	Rroxscaffold_1G00017930
rosa_rugosa	Rorug05G0351000
rosa_samantha	Rh5AG412000 Rh5BG426000 Rh5CG450100 Rh5DG439900
rosa_wichuraiana	Rw5G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	65
AciI	CCGC	6 cut(s)	32, 65, 187, 210, 425, 933
AclWI	GGATC	7 cut(s)	239, 252, 496, 974, 987, 1027, 1040
AcoI	YGGCCR	4 cut(s)	3, 69, 201, 867
AcsI	RAATTY	1 cut(s)	999
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	4 cut(s)	161, 269, 314, 423
AfiI	CCNNNNNNNGG	3 cut(s)	912, 913, 1028
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	157, 288, 347, 465
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	7 cut(s)	46, 336, 610, 865, 912, 966, 1013
AluI	AGCT	7 cut(s)	46, 336, 610, 865, 912, 966, 1013
Alw21I	GWGCWC	1 cut(s)	832
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	7 cut(s)	239, 252, 496, 974, 987, 1027, 1040
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	6 cut(s)	3, 69, 201, 225, 271, 867
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	965
AspLEI	GCGC	2 cut(s)	29, 365
AspS9I	GGNCC	2 cut(s)	225, 503
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	85, 978
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	869
BamHI	GGATCC	3 cut(s)	244, 979, 1032
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbsI	GAAGAC	2 cut(s)	169, 683
Bbv12I	GWGCWC	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	376, 514, 919
BceAI	ACGGC	5 cut(s)	115, 151, 188, 286, 598
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	446, 735
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	35, 933
BlsI	GCNGC	2 cut(s)	36, 934
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	24, 110
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	225, 503
BmiI	GGNNCC	6 cut(s)	246, 255, 931, 949, 981, 1034
BmrFI	CCNGG	2 cut(s)	24, 110
BmsI	GCATC	1 cut(s)	198
BoxI	GACNNNNGTC	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	169, 683
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	1 cut(s)	991
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	197
BsaWI	WCCGGW	2 cut(s)	256, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	912, 913, 1028
Bse1I	ACTGG	2 cut(s)	246, 793
Bse3DI	GCAATG	2 cut(s)	759, 764
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	281
BseGI	GGATG	1 cut(s)	930
BseLI	CCNNNNNNNGG	3 cut(s)	912, 913, 1028
BseMI	GCAATG	2 cut(s)	759, 764
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	2 cut(s)	246, 793
BseSI	GKGCMC	1 cut(s)	395
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	912
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	6 cut(s)	5, 71, 203, 227, 273, 869
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	832
BsiSI	CCGG	6 cut(s)	23, 72, 213, 257, 341, 482
BslI	CCNNNNNNNGG	3 cut(s)	912, 913, 1028
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	6 cut(s)	5, 71, 203, 227, 273, 869
Bsp1286I	GDGCHC	2 cut(s)	395, 832
Bsp143I	GATC	5 cut(s)	117, 244, 488, 979, 1032
BspACI	CCGC	6 cut(s)	32, 65, 187, 210, 425, 933
BspANI	GGCC	6 cut(s)	5, 71, 203, 227, 273, 869
BspCNI	CTCAG	1 cut(s)	690
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	2 cut(s)	78, 120
BspLI	GGNNCC	6 cut(s)	246, 255, 931, 949, 981, 1034
BspPI	GGATC	7 cut(s)	239, 252, 496, 974, 987, 1027, 1040
BsrDI	GCAATG	2 cut(s)	759, 764
BsrI	ACTGG	2 cut(s)	246, 793
BssMI	GATC	5 cut(s)	117, 244, 488, 979, 1032
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	454, 778, 921
Bst6I	CTCTTC	2 cut(s)	517, 523
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	491, 712
BstC8I	GCNNGC	6 cut(s)	44, 354, 717, 790, 867, 871
BstDEI	CTNAG	2 cut(s)	677, 908
BstF5I	GGATG	1 cut(s)	930
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 365
BstKTI	GATC	5 cut(s)	120, 247, 491, 982, 1035
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	5 cut(s)	117, 244, 488, 979, 1032
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 209, 362, 491, 591, 712
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	309
BstPAI	GACNNNNGTC	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	22, 108
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	169, 683
BstX2I	RGATCY	4 cut(s)	244, 488, 979, 1032
BstYI	RGATCY	4 cut(s)	244, 488, 979, 1032
BstZI	CGGCCG	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	6 cut(s)	5, 71, 203, 227, 273, 869
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	930
BtsIMutI	CAGTG	4 cut(s)	239, 459, 774, 926
Cac8I	GCNNGC	6 cut(s)	44, 354, 717, 790, 867, 871
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	2 cut(s)	78, 120
CfoI	GCGC	2 cut(s)	29, 365
Cfr13I	GGNCC	2 cut(s)	225, 503
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	4 cut(s)	160, 268, 313, 422
CviAII	CATG	5 cut(s)	79, 121, 306, 682, 885
CviQI	GTAC	4 cut(s)	160, 268, 313, 422
DdeI	CTNAG	2 cut(s)	677, 908
DpnI	GATC	5 cut(s)	119, 246, 490, 981, 1034
DpnII	GATC	5 cut(s)	117, 244, 488, 979, 1032
EaeI	YGGCCR	4 cut(s)	3, 69, 201, 867
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	517, 523
EarI	CTCTTC	2 cut(s)	517, 523
EciI	GGCGGA	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	503
Eco52I	CGGCCG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	5 cut(s)	82, 124, 309, 685, 888
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	5 cut(s)	78, 120, 305, 681, 884
Fnu4HI	GCNGC	2 cut(s)	35, 933
FokI	GGATG	1 cut(s)	937
Fsp4HI	GCNGC	2 cut(s)	35, 933
FspBI	CTAG	2 cut(s)	446, 735
GlaI	GCGC	2 cut(s)	28, 364
GluI	GCNGC	2 cut(s)	35, 933
GsaI	CCCAGC	1 cut(s)	916
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	6 cut(s)	5, 71, 203, 227, 273, 869
HapII	CCGG	6 cut(s)	23, 72, 213, 257, 341, 482
HhaI	GCGC	2 cut(s)	29, 365
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	82, 124, 309, 685, 888
Hin6I	GCGC	2 cut(s)	27, 363
HinP1I	GCGC	2 cut(s)	27, 363
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	2 cut(s)	75, 1018
HpaII	CCGG	6 cut(s)	23, 72, 213, 257, 341, 482
HphI	GGTGA	2 cut(s)	85, 978
Hpy166II	GTNNAC	2 cut(s)	262, 422
Hpy188I	TCNGA	2 cut(s)	511, 1005
Hpy188III	TCNNGA	4 cut(s)	79, 121, 193, 970
Hpy8I	GTNNAC	2 cut(s)	262, 422
Hpy99I	CGWCG	4 cut(s)	19, 143, 199, 202
HpyAV	CCTTC	4 cut(s)	229, 993, 999, 1021
HpyCH4III	ACNGT	3 cut(s)	454, 778, 921
HpyCH4IV	ACGT	5 cut(s)	14, 197, 330, 596, 836
HpyCH4V	TGCA	3 cut(s)	183, 406, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 209, 362, 491, 591, 712
HpyF3I	CTNAG	2 cut(s)	677, 908
HpySE526I	ACGT	5 cut(s)	14, 197, 330, 596, 836
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	5 cut(s)	82, 124, 309, 685, 888
HspAI	GCGC	2 cut(s)	27, 363
Kzo9I	GATC	5 cut(s)	117, 244, 488, 979, 1032
LmnI	GCTCC	4 cut(s)	34, 259, 929, 1010
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	446, 735
MaeII	ACGT	5 cut(s)	14, 197, 330, 596, 836
MaeIII	GTNAC	3 cut(s)	91, 448, 737
MalI	GATC	5 cut(s)	119, 246, 490, 981, 1034
MboI	GATC	5 cut(s)	117, 244, 488, 979, 1032
MboII	GAAGA	5 cut(s)	127, 169, 534, 540, 683
MflI	RGATCY	4 cut(s)	244, 488, 979, 1032
MhlI	GDGCHC	2 cut(s)	395, 832
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	3 cut(s)	720, 813, 999
MluNI	TGGCCA	1 cut(s)	869
MlyI	GAGTC	1 cut(s)	1027
MnlI	CCTC	4 cut(s)	182, 284, 310, 518
Mox20I	TGGCCA	1 cut(s)	869
MroXI	GAANNNNTTC	1 cut(s)	965
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	3 cut(s)	125, 848, 889
Msp20I	TGGCCA	1 cut(s)	869
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	6 cut(s)	23, 72, 213, 257, 341, 482
MspR9I	CCNGG	2 cut(s)	24, 110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	43, 209, 362, 491, 591, 712
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	5 cut(s)	117, 244, 488, 979, 1032
NlaIII	CATG	5 cut(s)	82, 124, 309, 685, 888
NlaIV	GGNNCC	6 cut(s)	246, 255, 931, 949, 981, 1034
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	3 cut(s)	91, 448, 737
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	78, 120
PciI	ACATGT	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	36, 934
PleI	GAGTC	1 cut(s)	1026
PpsI	GAGTC	1 cut(s)	1026
PscI	ACATGT	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	912
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	246, 255, 931, 949, 981, 1034
PspPI	GGNCC	2 cut(s)	225, 503
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	4 cut(s)	244, 488, 979, 1032
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	4 cut(s)	161, 269, 314, 423
RsaNI	GTAC	4 cut(s)	160, 268, 313, 422
RseI	CAYNNNNRTG	3 cut(s)	125, 848, 889
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	2 cut(s)	35, 933
Sau3AI	GATC	5 cut(s)	117, 244, 488, 979, 1032
Sau96I	GGNCC	2 cut(s)	225, 503
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	1 cut(s)	1027
ScrFI	CCNGG	2 cut(s)	24, 110
SduI	GDGCHC	2 cut(s)	395, 832
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	125, 848, 889
SmlI	CTYRAG	1 cut(s)	970
SmoI	CTYRAG	1 cut(s)	970
Sse9I	AATT	3 cut(s)	720, 813, 999
SsiI	CCGC	6 cut(s)	32, 65, 187, 210, 425, 933
SspI	AATATT	2 cut(s)	468, 648
SspMI	CTAG	2 cut(s)	446, 735
StyD4I	CCNGG	2 cut(s)	22, 108
TaaI	ACNGT	3 cut(s)	454, 778, 921
TaiI	ACGT	5 cut(s)	17, 200, 333, 599, 839
TaqI	TCGA	3 cut(s)	281, 756, 1016
TasI	AATT	3 cut(s)	720, 813, 999
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	4 cut(s)	246, 459, 781, 926
TseFI	GTSAC	3 cut(s)	91, 448, 737
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	3 cut(s)	91, 448, 737
TspDTI	ATGAA	2 cut(s)	460, 713
TspGWI	ACGGA	2 cut(s)	534, 992
TspRI	CASTG	4 cut(s)	246, 459, 781, 926
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	999
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	2 cut(s)	446, 735
ZraI	GACGTC	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.