Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Forward (+)

17262943 .. 17264555

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACAGCCATTCGCGTCTGCTCGCGAAAGTTCCCAACTTTCGCTTCGATTTTCTTCCAAAACATTACAAGGAATCCGTCAATTCATCGAATTTCATTCTCGAATTTAAAACCCAAAACGCTACTTCACCCAATTCCGCCGAAACCCTTCACTGTCTTTGTTTCTCGGTTCCATGACGGGAGACCAAGAGGTCCTCTCTGGAGAGGTAAGAAACTGATCGGAAAAGAAGCCCTTTTCGTGATTCTGGGTCTCAAGAGATTGAAAGAAGACGACGAGAAGCTGGACAAGTTTATAAAAACCCATGTTTTCAGATTGTTGAAATTAGACATGTTAGCTGTTATCGGTGAGCTTGAACGACAAGAAGAGACTGCGTTAGCCATCAAGATGTTTGAGGTGATCCAGAAACAAGAATGGTACCAACCTGATGTGTTTATGTACAAGGACCTTATAGTATCCTTAGCAAAGAGTAAAAGAATGGATGAAGCAATGGCGTTGTGGGAGAAAATGAAGAAAGAAAACCTCTTTCCTGATTCTCAGACTTATACTGAGGTTATCAGAGGATTTCTTCGAGACGGATGTCCAGCTGATGCTATGAATGTGTATGAAGACATGTTGAAATCTCCAGATCCGCCGGAAGAGTTGCCGTTTAGGGTTTTGTTGAAGGGGCTTCTGCCGCATCCGCTTCTTAGAAACAAAGTGAAGAAGGATTTCGAAGAGTTGTTCCCTGAGAAACATGCTTATGATCCACCAGAAGAGATATTTGGTAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

257

Amino Acids

30.13

Weight (kDa)

9.27

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	153 - 201	8.5e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AasI	GACNNNNNNGTC	1 cut(s)	189
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	414
AccII	CGCG	2 cut(s)	15, 25
AciI	CCGC	4 cut(s)	137, 629, 674, 680
AclWI	GGATC	3 cut(s)	391, 620, 737
AcsI	RAATTY	2 cut(s)	90, 103
AfaI	GTAC	2 cut(s)	416, 437
AflIII	ACRYGT	2 cut(s)	327, 609
AgsI	TTSAA	5 cut(s)	262, 319, 353, 616, 661
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 60, 744
AluBI	AGCT	4 cut(s)	280, 335, 349, 584
AluI	AGCT	4 cut(s)	280, 335, 349, 584
Alw26I	GTCTC	4 cut(s)	175, 254, 359, 564
AlwI	GGATC	3 cut(s)	391, 620, 737
ApoI	RAATTY	2 cut(s)	90, 103
Asp700I	GAANNNNTTC	2 cut(s)	146, 707
Asp718I	GGTACC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	191, 442
AsuHPI	GGTGA	3 cut(s)	119, 356, 406
AsuII	TTCGAA	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	191, 442
BanI	GGYRCC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	273, 612
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	628
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	4 cut(s)	175, 254, 359, 564
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	191, 442
BmgT120I	GGNCC	2 cut(s)	191, 442
BmiI	GGNNCC	2 cut(s)	170, 416
BmsI	GCATC	3 cut(s)	577, 685, 758
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	2 cut(s)	273, 612
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpmI	CTGGAG	2 cut(s)	220, 606
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	236
BsaI	GGTCTC	2 cut(s)	175, 254
Bse3DI	GCAATG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	484, 581, 676
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	537, 548, 717
Bsh1236I	CGCG	2 cut(s)	15, 25
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	632
BsmAI	GTCTC	4 cut(s)	175, 254, 359, 564
BsmBI	CGTCTC	1 cut(s)	564
Bso31I	GGTCTC	2 cut(s)	175, 254
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	216, 396, 625, 742
Bsp68I	TCGCGA	1 cut(s)	25
BspACI	CCGC	4 cut(s)	137, 629, 674, 680
BspCNI	CTCAG	3 cut(s)	538, 547, 718
BspFNI	CGCG	2 cut(s)	15, 25
BspLI	GGNNCC	2 cut(s)	170, 416
BspPI	GGATC	3 cut(s)	391, 620, 737
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	414
BspTNI	GGTCTC	2 cut(s)	175, 254
BsrDI	GCAATG	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	435
BssMI	GATC	4 cut(s)	216, 396, 625, 742
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	4 cut(s)	357, 630, 708, 747
BstAUI	TGTACA	1 cut(s)	435
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	5 cut(s)	457, 534, 546, 686, 726
BstF5I	GGATG	3 cut(s)	484, 581, 676
BstFNI	CGCG	2 cut(s)	15, 25
BstKTI	GATC	4 cut(s)	219, 399, 628, 745
BstMAI	GTCTC	4 cut(s)	175, 254, 359, 564
BstMBI	GATC	4 cut(s)	216, 396, 625, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	673, 679
BstNSI	RCATGY	3 cut(s)	331, 613, 737
BstPAI	GACNNNNGTC	1 cut(s)	576
BstUI	CGCG	2 cut(s)	15, 25
BstV2I	GAAGAC	2 cut(s)	273, 612
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	484, 581, 676
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	191, 442
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	415, 436
CviAII	CATG	5 cut(s)	173, 302, 328, 610, 734
CviJI	RGCY	8 cut(s)	8, 230, 280, 335, 349, 377, 584, 667
CviKI_1	RGCY	8 cut(s)	8, 230, 280, 335, 349, 377, 584, 667
CviQI	GTAC	2 cut(s)	415, 436
DdeI	CTNAG	5 cut(s)	457, 534, 546, 686, 726
DpnI	GATC	4 cut(s)	218, 398, 627, 744
DpnII	GATC	4 cut(s)	216, 396, 625, 742
DraI	TTTAAA	1 cut(s)	108
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
Eam1104I	CTCTTC	4 cut(s)	357, 630, 708, 747
EarI	CTCTTC	4 cut(s)	357, 630, 708, 747
EciI	GGCGGA	2 cut(s)	126, 618
Eco31I	GGTCTC	2 cut(s)	175, 254
Eco47I	GGWCC	2 cut(s)	191, 442
EcoO109I	RGGNCCY	2 cut(s)	191, 442
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	5 cut(s)	176, 305, 331, 613, 737
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	5 cut(s)	172, 301, 327, 609, 733
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	3 cut(s)	491, 588, 663
Fsp4HI	GCNGC	1 cut(s)	674
GluI	GCNGC	1 cut(s)	674
GsuI	CTGGAG	2 cut(s)	220, 606
HapII	CCGG	1 cut(s)	632
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	5 cut(s)	176, 305, 331, 613, 737
HinfI	GANTC	3 cut(s)	73, 241, 530
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	3 cut(s)	119, 356, 406
Hpy188I	TCNGA	4 cut(s)	221, 311, 537, 557
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	157, 655, 697
HpyCH4III	ACNGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	673, 679
HpyF3I	CTNAG	5 cut(s)	457, 534, 546, 686, 726
Hsp92II	CATG	5 cut(s)	176, 305, 331, 613, 737
KpnI	GGTACC	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	216, 396, 625, 742
LweI	GCATC	3 cut(s)	577, 685, 758
MalI	GATC	4 cut(s)	218, 398, 627, 744
MboI	GATC	4 cut(s)	216, 396, 625, 742
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	5 cut(s)	81, 90, 103, 132, 320
MnlI	CCTC	7 cut(s)	182, 197, 204, 385, 530, 541, 551
MroXI	GAANNNNTTC	2 cut(s)	146, 707
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	2 cut(s)	383, 738
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	632
MvnI	CGCG	2 cut(s)	15, 25
MwoI	GCNNNNNNNGC	2 cut(s)	673, 679
NdeII	GATC	4 cut(s)	216, 396, 625, 742
NlaIII	CATG	5 cut(s)	176, 305, 331, 613, 737
NlaIV	GGNNCC	2 cut(s)	170, 416
NruI	TCGCGA	1 cut(s)	25
NspI	RCATGY	3 cut(s)	331, 613, 737
NspV	TTCGAA	1 cut(s)	711
PciI	ACATGT	2 cut(s)	327, 609
PdmI	GAANNNNTTC	2 cut(s)	146, 707
PfeI	GAWTC	3 cut(s)	73, 241, 530
PkrI	GCNGC	1 cut(s)	675
PpuMI	RGGWCCY	2 cut(s)	191, 442
PscI	ACATGT	2 cut(s)	327, 609
PshAI	GACNNNNGTC	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	293
Psp5II	RGGWCCY	2 cut(s)	191, 442
PspN4I	GGNNCC	2 cut(s)	170, 416
PspPI	GGNCC	2 cut(s)	191, 442
PspPPI	RGGWCCY	2 cut(s)	191, 442
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	584
RruI	TCGCGA	1 cut(s)	25
RsaI	GTAC	2 cut(s)	416, 437
RsaNI	GTAC	2 cut(s)	415, 436
RseI	CAYNNNNRTG	2 cut(s)	383, 738
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	4 cut(s)	216, 396, 625, 742
Sau96I	GGNCC	2 cut(s)	191, 442
SfaNI	GCATC	3 cut(s)	577, 685, 758
SfuI	TTCGAA	1 cut(s)	711
SinI	GGWCC	2 cut(s)	191, 442
SmiMI	CAYNNNNRTG	2 cut(s)	383, 738
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	81, 90, 103, 132, 320
SsiI	CCGC	4 cut(s)	137, 629, 674, 680
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	5 cut(s)	47, 88, 101, 568, 711
TasI	AATT	5 cut(s)	81, 90, 103, 132, 320
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	3 cut(s)	73, 241, 530
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	6 cut(s)	74, 84, 495, 521, 608, 618
TspGWI	ACGGA	2 cut(s)	66, 588
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	191, 442
XapI	RAATTY	2 cut(s)	90, 103
XceI	RCATGY	3 cut(s)	331, 613, 737
XmnI	GAANNNNTTC	2 cut(s)	146, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.