Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Forward (+)

51554216 .. 51554934

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGATCTTGTAGGACTTGCCTACTCTGAGGGTTATCTTTCTATGTCATACAACGACCATATGGAAAACCATAGAACAAAGGCCAATTCTGGTTTTGTTGTTCCTGTTGTGTTTGATGTTTCAGTGCAGCAGTACAGAAAGTTAATCCGATTATACTCAACGGTTATACTTTCAAATGCGACTTCAATGCCATTGGTGCTGCAATTTGATATTCCATTTGGTGTGTCCCCAAAGATCTTGGACCCCATATATCCAGGTCAAGAGTTACCGCTGCCTCTACACTTGGCTGAAGCCAGTAGGATTAGATGGTGTCCAATTGGAGATTCTCATCTCTGGAGTGAAGTTTATAATCTCTCAAACCTGCTTTCTCAAGAGAGTAAAATTAAATTTCTCAAGTCTTTTGGTTGCTATTCAGCCCATCCCAATAGTGATCCATTTCACTGTTGTATTTCAGTTAGAAACATCAGTTTACCTTCATCTGTTAGGTCAAGTGGAGATCTTTTCTTCACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

6.57

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	369
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	12, 425
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	174, 186
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AlwI	GGATC	2 cut(s)	12, 425
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	127, 199, 271
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	139, 186, 258
BccI	CCATC	2 cut(s)	300, 426
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	369
BglII	AGATCT	2 cut(s)	234, 496
BisI	GCNGC	3 cut(s)	128, 200, 272
BlsI	GCNGC	3 cut(s)	129, 201, 273
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	355
BpuEI	CTTGAG	2 cut(s)	354, 377
BsaBI	GATNNNNATC	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	139, 186, 258
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	4, 234, 430, 496
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	12, 425
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	4 cut(s)	4, 234, 430, 496
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	163, 443
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	4 cut(s)	7, 237, 433, 499
BstMBI	GATC	4 cut(s)	4, 234, 430, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	139, 186, 258
BstX2I	RGATCY	3 cut(s)	4, 234, 496
BstYI	RGATCY	3 cut(s)	4, 234, 496
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	129, 439
BveI	ACCTGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	4 cut(s)	83, 287, 293, 416
CviKI_1	RGCY	4 cut(s)	83, 287, 293, 416
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	6, 236, 432, 498
DpnII	GATC	4 cut(s)	4, 234, 430, 496
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	253
FaqI	GGGAC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	128, 200, 272
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	3 cut(s)	128, 200, 272
GluI	GCNGC	3 cut(s)	128, 200, 272
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	28, 149
Hpy188III	TCNNGA	3 cut(s)	260, 334, 371
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	2 cut(s)	163, 443
HpyCH4V	TGCA	2 cut(s)	127, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	4, 234, 430, 496
LpnPI	CCDG	7 cut(s)	75, 117, 240, 267, 307, 319, 374
Lsp1109I	GCAGC	3 cut(s)	139, 186, 258
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	4 cut(s)	6, 236, 432, 498
MboI	GATC	4 cut(s)	4, 234, 430, 496
MboII	GAAGA	1 cut(s)	496
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	3 cut(s)	4, 234, 496
MluCI	AATT	5 cut(s)	85, 203, 315, 381, 386
MnlI	CCTC	2 cut(s)	22, 285
MseI	TTAA	3 cut(s)	143, 384, 514
MspA1I	CMGCKG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	4 cut(s)	4, 234, 430, 496
NlaIV	GGNNCC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	129, 201, 273
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	3 cut(s)	4, 234, 496
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	143, 384, 514
SatI	GCNGC	3 cut(s)	128, 200, 272
Sau3AI	GATC	4 cut(s)	4, 234, 430, 496
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	4 cut(s)	259, 363, 475, 488
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	369, 392
SmoI	CTYRAG	2 cut(s)	369, 392
Sse9I	AATT	5 cut(s)	85, 203, 315, 381, 386
SsiI	CCGC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	163, 443
TasI	AATT	5 cut(s)	85, 203, 315, 381, 386
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	143, 384, 514
Tru9I	TTAA	3 cut(s)	143, 384, 514
TscAI	CASTG	2 cut(s)	129, 446
TseI	GCWGC	3 cut(s)	127, 199, 271
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	129, 446
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.