Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Reverse (-)

5868159 .. 5869612

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCAATGGCGACTCGTGCATTTTCCCGGTCAAAGTTTGCATTTTTCTCTTCAATACTCCTTCAAAACCTGAAAACAACGCCCATCAAGTCGACCCTAATGCTTCTAAAATCCACAGAACTTGAACTCGAGTCCTGGAGATCCATTATTGGGCTGAGGCTGTATCACGACGGGAGGCCCAGAGGACCGCTCTGGAGGGGCAAAACGGTTCGAGGACGACGAAGAGAAGCTCGGGAAGTTTGTAAATACGCACGTGTTTTGAGACTGTTGAAGATGGATATGATTGCTGTTCTCACTGAGCTTGAGCGCCAGGAAGAAGTCTATTTGGCAATTAAGACCATTATTTGGAATGAATTCCTTCTAGACTGCACATCTTTATTTCTGTTTAACTACATATGCAATGAAGTTATGTCTTTGTTTATTGGAATTACAAGCGCCTCGGTGAATTTTCAGGTATTTAATGTTATTCGAAAGCAAGACTGGTACAAACCGGATGTCTATCTGTATAAGGACTTAATTATTGCATTAGCAAGATCTAAGAAAATGGAGGACGTTATGCTACTGTGGGACAGCATAAAAAAGGAGGATCTGTTTCCTGATTCTCAAACATATACAGAAGTTATCAGGGGTTTTTTGAACTCTGGTTGTCCTGCAGATGCACGGAACATTTATGAGGACTTGAAGCAGTCTCCAGATCCGCCGGAGGAGCTACCATTCCGGATTTTGTTGAAGGGACTTCTGCCACACCCCCTTTTGAGAAACAGAGTCAAGCAAGACCTTGAGGAGCTGTTTCCGGAACAGCATGTGTACGATCCTCCGGAAGAGATATTTGGCATGCTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

282

Amino Acids

32.92

Weight (kDa)

8.56

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	164 - 212	5.8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	92
AccIII	TCCGGA	3 cut(s)	717, 793, 817
AciI	CCGC	2 cut(s)	188, 698
AclWI	GGATC	4 cut(s)	135, 594, 689, 806
AcsI	RAATTY	2 cut(s)	353, 445
AcvI	CACGTG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	485, 809
AfiI	CCNNNNNNNGG	2 cut(s)	150, 345
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	7 cut(s)	54, 65, 125, 271, 637, 682, 730
AjnI	CCWGG	2 cut(s)	134, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	813, 845
AluBI	AGCT	4 cut(s)	230, 301, 709, 787
AluI	AGCT	4 cut(s)	230, 301, 709, 787
Alw26I	GTCTC	2 cut(s)	256, 693
AlwI	GGATC	4 cut(s)	135, 594, 689, 806
Ama87I	CYCGRG	2 cut(s)	128, 231
Aor13HI	TCCGGA	3 cut(s)	717, 793, 817
AoxI	GGCC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	353, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
Asp700I	GAANNNNTTC	2 cut(s)	353, 357
AspLEI	GCGC	2 cut(s)	309, 437
AspS9I	GGNCC	2 cut(s)	177, 185
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	469
AvaI	CYCGRG	2 cut(s)	128, 231
AvaII	GGWCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	15
BbrPI	CACGTG	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	92, 268
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	2 cut(s)	136, 311
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	256, 693
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	2 cut(s)	310, 438
BglII	AGATCT	1 cut(s)	533
Bme1390I	CCNGG	3 cut(s)	28, 136, 311
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	128, 231
BmgT120I	GGNCC	2 cut(s)	177, 185
BmrFI	CCNGG	3 cut(s)	28, 136, 311
BmsI	GCATC	1 cut(s)	646
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	3 cut(s)	157, 214, 675
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	323, 800
BpuMI	CCSGG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	438
BsaWI	WCCGGW	4 cut(s)	490, 717, 793, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 345
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	2 cut(s)	12, 406
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	3 cut(s)	717, 793, 817
BseBI	CCWGG	2 cut(s)	136, 311
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	150, 345
BseMI	GCAATG	2 cut(s)	12, 406
BseMII	CTCAG	2 cut(s)	146, 288
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	2 cut(s)	719, 797
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	178
BsiHKCI	CYCGRG	2 cut(s)	128, 231
BsiSI	CCGG	6 cut(s)	28, 491, 701, 718, 794, 818
BslFI	GGGAC	2 cut(s)	581, 747
BslI	CCNNNNNNNGG	2 cut(s)	150, 345
BsmAI	GTCTC	2 cut(s)	256, 693
BsmFI	GGGAC	2 cut(s)	581, 747
BsnI	GGCC	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	128, 231
Bsp119I	TTCGAA	1 cut(s)	469
Bsp13I	TCCGGA	3 cut(s)	717, 793, 817
Bsp143I	GATC	5 cut(s)	140, 533, 586, 694, 811
BspACI	CCGC	2 cut(s)	188, 698
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	147, 289
BspEI	TCCGGA	3 cut(s)	717, 793, 817
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	4 cut(s)	135, 594, 689, 806
BspT104I	TTCGAA	1 cut(s)	469
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	12, 406
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	5 cut(s)	140, 533, 586, 694, 811
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	136, 311
Bst4CI	ACNGT	3 cut(s)	208, 267, 564
Bst6I	CTCTTC	3 cut(s)	55, 217, 816
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	836
BstDEI	CTNAG	3 cut(s)	155, 297, 537
BstF5I	GGATG	1 cut(s)	499
BstH2I	RGCGCY	2 cut(s)	310, 438
BstHHI	GCGC	2 cut(s)	309, 437
BstKTI	GATC	5 cut(s)	143, 536, 589, 697, 814
BstMAI	GTCTC	2 cut(s)	256, 693
BstMBI	GATC	5 cut(s)	140, 533, 586, 694, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 706, 840
BstNI	CCWGG	2 cut(s)	136, 311
BstNSI	RCATGY	2 cut(s)	806, 838
BstSCI	CCNGG	3 cut(s)	26, 134, 309
BstSFI	CTRYAG	1 cut(s)	651
BstX2I	RGATCY	4 cut(s)	140, 533, 586, 694
BstYI	RGATCY	4 cut(s)	140, 533, 586, 694
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	836
CfoI	GCGC	2 cut(s)	309, 437
Cfr13I	GGNCC	2 cut(s)	177, 185
Csp6I	GTAC	2 cut(s)	484, 808
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	2 cut(s)	803, 835
CviJI	RGCY	8 cut(s)	154, 160, 178, 230, 301, 709, 787, 843
CviKI_1	RGCY	8 cut(s)	154, 160, 178, 230, 301, 709, 787, 843
CviQI	GTAC	2 cut(s)	484, 808
DdeI	CTNAG	3 cut(s)	155, 297, 537
DpnI	GATC	5 cut(s)	142, 535, 588, 696, 813
DpnII	GATC	5 cut(s)	140, 533, 586, 694, 811
Eam1104I	CTCTTC	3 cut(s)	55, 217, 816
EarI	CTCTTC	3 cut(s)	55, 217, 816
EciI	GGCGGA	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	2 cut(s)	128, 231
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	134, 309
FaeI	CATG	2 cut(s)	806, 838
FaqI	GGGAC	2 cut(s)	581, 747
FatI	CATG	2 cut(s)	802, 834
FauNDI	CATATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	92
FokI	GGATG	1 cut(s)	506
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	308, 436
GsuI	CTGGAG	3 cut(s)	157, 214, 675
HaeII	RGCGCY	2 cut(s)	310, 438
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	6 cut(s)	28, 491, 701, 718, 794, 818
HhaI	GCGC	2 cut(s)	309, 437
Hin1II	CATG	2 cut(s)	806, 838
Hin6I	GCGC	2 cut(s)	307, 435
HinP1I	GCGC	2 cut(s)	307, 435
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	4 cut(s)	13, 131, 599, 765
HpaII	CCGG	6 cut(s)	28, 491, 701, 718, 794, 818
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	2 cut(s)	93, 808
Hpy188III	TCNNGA	9 cut(s)	167, 193, 233, 362, 596, 692, 718, 794, 818
Hpy8I	GTNNAC	2 cut(s)	93, 808
Hpy99I	CGWCG	2 cut(s)	173, 222
HpyAV	CCTTC	3 cut(s)	71, 368, 724
HpyCH4III	ACNGT	3 cut(s)	208, 267, 564
HpyCH4IV	ACGT	2 cut(s)	253, 552
HpyCH4V	TGCA	7 cut(s)	20, 41, 369, 399, 524, 653, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 706, 840
HpyF3I	CTNAG	3 cut(s)	155, 297, 537
HpySE526I	ACGT	2 cut(s)	253, 552
Hsp92II	CATG	2 cut(s)	806, 838
HspAI	GCGC	2 cut(s)	307, 435
Kpn2I	TCCGGA	3 cut(s)	717, 793, 817
Kzo9I	GATC	5 cut(s)	140, 533, 586, 694, 811
LmnI	GCTCC	2 cut(s)	706, 784
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	253, 552
MalI	GATC	5 cut(s)	142, 535, 588, 696, 813
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	5 cut(s)	140, 533, 586, 694, 811
MboII	GAAGA	5 cut(s)	42, 234, 283, 326, 833
MflI	RGATCY	4 cut(s)	140, 533, 586, 694
MluCI	AATT	5 cut(s)	330, 353, 426, 445, 516
MlyI	GAGTC	3 cut(s)	7, 140, 774
MroI	TCCGGA	3 cut(s)	717, 793, 817
MroXI	GAANNNNTTC	2 cut(s)	353, 357
MseI	TTAA	4 cut(s)	333, 387, 459, 515
MspI	CCGG	6 cut(s)	28, 491, 701, 718, 794, 818
MspR9I	CCNGG	3 cut(s)	28, 136, 311
MvaI	CCWGG	2 cut(s)	136, 311
MwoI	GCNNNNNNNGC	3 cut(s)	17, 706, 840
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	5 cut(s)	140, 533, 586, 694, 811
NlaIII	CATG	2 cut(s)	806, 838
NmeAIII	GCCGAG	1 cut(s)	819
NspI	RCATGY	2 cut(s)	806, 838
NspV	TTCGAA	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	838
PaeR7I	CTCGAG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	353, 357
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	134
PleI	GAGTC	3 cut(s)	7, 139, 773
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	3 cut(s)	7, 139, 773
Ppu21I	YACGTR	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	134, 309
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	134, 309
PspPI	GGNCC	2 cut(s)	177, 185
PspXI	VCTCGAGB	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	4 cut(s)	140, 533, 586, 694
RsaI	GTAC	2 cut(s)	485, 809
RsaNI	GTAC	2 cut(s)	484, 808
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	4 cut(s)	333, 387, 459, 515
Sau3AI	GATC	5 cut(s)	140, 533, 586, 694, 811
Sau96I	GGNCC	2 cut(s)	177, 185
SchI	GAGTC	3 cut(s)	7, 140, 774
ScrFI	CCNGG	3 cut(s)	28, 136, 311
SetI	ASST	9 cut(s)	72, 232, 256, 303, 456, 555, 711, 780, 789
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	128, 302, 779
SmoI	CTYRAG	3 cut(s)	128, 302, 779
SphI	GCATGC	1 cut(s)	838
Sse9I	AATT	5 cut(s)	330, 353, 426, 445, 516
SsiI	CCGC	2 cut(s)	188, 698
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	26, 134, 309
TaaI	ACNGT	3 cut(s)	208, 267, 564
TaiI	ACGT	2 cut(s)	256, 555
TaqI	TCGA	4 cut(s)	92, 129, 211, 469
TasI	AATT	5 cut(s)	330, 353, 426, 445, 516
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	4 cut(s)	333, 387, 459, 515
Tru9I	TTAA	4 cut(s)	333, 387, 459, 515
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	366, 417
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	353, 445
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	806, 838
XhoI	CTCGAG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	353, 357
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.