Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Forward (+)

51551711 .. 51553732

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGCTGAGCCTCAGACCTCAACGTCATCGTCTCCTTTCTCTCTCAGCTCACAGACACAAGCCCACCAATTGGAACACCACCACCCACAAATTTGTTCAAGCAAACCCACTTCTCTCCCTATTGGAAACCTGCAAATCCATGTCCCAGTTGAAGCAAATCCAAACTCAAATGATCATTACCGGCTTCATCTCAGACGGGTTCGCTTCTAGTCGCCTCATTGCCTTCTGTGCGCTTTCGGAGTGCCGAAATCTTCACTATGCCACCAAGATCCTGCACAATGTGCACGACCCAAATGCCTTCTCTTGGAATGTGGTCATCCGAGGGCTTTCGGAGACCGAAAATCCGAGAGGAGCAGTTGTAATGTATAGGGAGATGTTGAGAAATGGTGGGTCGAGACCGGATAATTATACTTACCCATTACTACTAGGAATCTGCTCTAATTTGTCATTGAATTTGATGGGGGGTTTGGTTCTTGGCCATGTGTTCCGAGTGGGATTGGATTCTGATAGATTTGTTCGCAATGCGGCGATTCATATGCTTGTTTCATTCAGAGAATTAGGGGATGCACGTAAGGTGTTCGACGAAAGTTCTGTGAGAGACTTGGTGTCTTGGAATTCTCTGATTCATGGTTATGTGCGAAGTGGGTTGGCACGTGAGGCATTGCGGGTTTATGAGGAAATGGAGGTGGAGAGAGTTGAGCCGGATCAAGTGACAATGATTGGGGTGGTTTCTTCGTGTGCCCAACTTGAGGACTTGAGTCTCGGGAGGAAATTTCATCGGTTGATACGAGAGATTGGGCTAGGCTTGACTCCTCCTCTTGCCAATGCACTTATGGACATGTACGCCAAGTGTGGGAATCTTGAGGCAGCTCAAGCATTATTTGACAACATGAGACAGAAAACCATCGTCTCATGGACTACAATGATAGTGGGATATGCCAAACATGGGTTTTTGGAGATTGCTCACCGCCTTTTGTACGAGGTGCCAGAGAGTAATGTTGTGCCGTGGAATGCAATGATCGGTGGCTATGTGCAAGCTAGACGTAGCAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAATCTAGGAACATAAATCCTGATGAAATAACCATGGTTTGCTGCTTATCTGCATGCTCACAACTTGGAGCAGTTGATGTTGGAATATGGATTCACCATTATATTGAAAAACATGATCTTTCTCTCAACGTTGCTTTAGGGACTGCCCTTGTTGACATGTATGCTAAGTGTGGGAACATCACAAAAGCTCTCAATATTTTCTTGGACATGCCAGGAAAAAATTGTTTCACTTGGACATCTATCATTTGTGGTTTAGCCCTTAATGGACATGCACATGATGCTATATCTTACTTTGAAGAGATGATAAATACGGGACTGAAGCCCGATGAGATCACGTTTCTTGGAGTATTATCAGCATGTTGCCATGGAGGTTTGGTTGAAGAAGGCCGAAAGTATTTTTCCTTAATGAACACTAAATTCAATATCTGCCCGAAACTTAAACATTACTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGTCTTTTGCAAGAAGCAGCGGATCTTATTAATAGCATGCCAATCAAGGCAGATGCTGTGGTGTGGGGTGCATTATTCTTTGCTTGTTATATTCACAAAAGTGTTTTGATGGGAGAAAGAGCAGCTTCCAAGCTTCTTGAGTTGGACCCCCACGATAGTGGAATTTATGTTTTGCTTGCAAAAATGTATAGGGAATTGAATATGTGGGAGAAGGCAGAGCAGGCAAAGAAGATGATGAAGGAGAGAGGACTGGAGAAGACTCCTGGTTGTAGCTCAATTGAGGTGAATGGCAGTGTGTGCGAGTTCATTGTCAGAGACAAATCACATCCTCATTCGAAACAGATCTATGATTGCTTATTTCAGTTAACAAGACAAATGGATCCGGTGGGTGGTATATCTGAAGTTCCTGCACTTTGGGATGACTCTCTCCTTGGTGATGAATTTAGGCAAAATTTTACTAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

673

Amino Acids

75.52

Weight (kDa)

7.1

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 144	1.1e-07	PPR repeat family
PPR_2	PF13041	200 - 247	8.4e-11	PPR repeat family
PPR	PF01535	202 - 230	2.5e-08	PPR repeat
PPR_2	PF13041	332 - 379	3.1e-12	PPR repeat family
PPR	PF01535	335 - 364	9.4e-08	PPR repeat
PPR_2	PF13041	433 - 481	1.1e-09	PPR repeat family
E_motif	PF20431	551 - 612	7e-16	E motif
Eplus_motif	PF20430	618 - 644	4.8e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2007
AasI	GACNNNNNNGTC	1 cut(s)	21
Acc36I	ACCTGC	2 cut(s)	137, 2007
AccB1I	GGYRCC	1 cut(s)	982
AccB7I	CCANNNNNTGG	1 cut(s)	69
AciI	CCGC	4 cut(s)	524, 664, 967, 1574
AclI	AACGTT	1 cut(s)	1206
AclWI	GGATC	5 cut(s)	262, 711, 1584, 1928, 1941
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	8 cut(s)	89, 451, 613, 770, 1493, 1716, 1994, 2005
AcuI	CTGAAG	2 cut(s)	1415, 1974
AcvI	CACGTG	1 cut(s)	653
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	842, 977
AfiI	CCNNNNNNNGG	6 cut(s)	69, 303, 748, 852, 945, 1943
AflIII	ACRYGT	2 cut(s)	837, 1233
AgsI	TTSAA	8 cut(s)	98, 151, 451, 1184, 1373, 1457, 1498, 1753
AhdI	GACNNNNNGTC	1 cut(s)	604
AjnI	CCWGG	2 cut(s)	1288, 1816
AleI	CACNNNNGTG	2 cut(s)	1653, 1710
AluBI	AGCT	7 cut(s)	47, 869, 1037, 1265, 1679, 1687, 1827
AluI	AGCT	7 cut(s)	47, 869, 1037, 1265, 1679, 1687, 1827
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	8 cut(s)	35, 326, 388, 591, 764, 886, 913, 1863
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	5 cut(s)	262, 711, 1584, 1928, 1941
AlwNI	CAGNNNCTG	1 cut(s)	1610
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	2 cut(s)	475, 1462
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	4 cut(s)	866, 1119, 1571, 1676
ApoI	RAATTY	8 cut(s)	89, 451, 613, 770, 1493, 1716, 1994, 2005
AseI	ATTAAT	1 cut(s)	1584
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	1537, 1699
AsuHPI	GGTGA	4 cut(s)	956, 1163, 1849, 2000
AsuII	TTCGAA	1 cut(s)	1889
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	1537, 1699
BaeGI	GKGCMC	2 cut(s)	285, 742
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	1933
BanI	GGYRCC	1 cut(s)	982
BbrPI	CACGTG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	1817
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	878, 1106, 1583, 1688
BccI	CCATC	3 cut(s)	451, 911, 1657
BceAI	ACGGC	1 cut(s)	988
BcgI	CGANNNNNNTGC	4 cut(s)	275, 309, 517, 551
BciT130I	CCWGG	2 cut(s)	1290, 1818
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	8 cut(s)	35, 326, 388, 591, 764, 886, 913, 1863
BfaI	CTAG	7 cut(s)	207, 425, 800, 1038, 1083, 1544, 2013
BfuAI	ACCTGC	2 cut(s)	137, 2007
BglII	AGATCT	1 cut(s)	1896
BisI	GCNGC	5 cut(s)	525, 867, 1120, 1572, 1677
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	5 cut(s)	526, 868, 1121, 1573, 1678
Bme1390I	CCNGG	2 cut(s)	1290, 1818
Bme18I	GGWCC	2 cut(s)	1537, 1699
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	1537, 1699
BmiI	GGNNCC	3 cut(s)	984, 1701, 1935
BmrFI	CCNGG	2 cut(s)	1290, 1818
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	553, 1345, 1597
BmuI	ACTGGG	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	1817
BpmI	CTGGAG	1 cut(s)	1826
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	1889
BpuEI	CTTGAG	5 cut(s)	767, 775, 855, 881, 1712
BsaAI	YACGTR	2 cut(s)	569, 653
BsaI	GGTCTC	2 cut(s)	326, 388
BsaJI	CCNNGG	5 cut(s)	319, 1004, 1110, 1441, 1984
BsaWI	WCCGGW	2 cut(s)	397, 1936
BsaXI	ACNNNNNCTCC	4 cut(s)	342, 372, 1437, 1467
Bsc4I	CCNNNNNNNGG	6 cut(s)	69, 303, 748, 852, 945, 1943
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	145, 1809
Bse3DI	GCAATG	4 cut(s)	216, 526, 659, 1020
BseBI	CCWGG	2 cut(s)	1290, 1818
BseDI	CCNNGG	5 cut(s)	319, 1004, 1110, 1441, 1984
BseGI	GGATG	4 cut(s)	315, 568, 1879, 1978
BseLI	CCNNNNNNNGG	6 cut(s)	69, 303, 748, 852, 945, 1943
BseMI	GCAATG	4 cut(s)	216, 526, 659, 1020
BseMII	CTCAG	3 cut(s)	25, 57, 204
BseNI	ACTGG	2 cut(s)	145, 1809
BseRI	GAGGAG	3 cut(s)	363, 801, 804
BseSI	GKGCMC	2 cut(s)	285, 742
BseXI	GCAGC	4 cut(s)	878, 1106, 1583, 1688
BsgI	GTGCAG	2 cut(s)	257, 1947
BshFI	GGCC	2 cut(s)	477, 1464
BshNI	GGYRCC	1 cut(s)	982
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	4 cut(s)	180, 398, 701, 1937
BslFI	GGGAC	3 cut(s)	127, 1231, 1404
BslI	CCNNNNNNNGG	6 cut(s)	69, 303, 748, 852, 945, 1943
BsmAI	GTCTC	8 cut(s)	35, 326, 388, 591, 764, 886, 913, 1863
BsmBI	CGTCTC	2 cut(s)	35, 913
BsmFI	GGGAC	3 cut(s)	127, 1231, 1404
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	2 cut(s)	477, 1464
Bso31I	GGTCTC	2 cut(s)	326, 388
BsoBI	CYCGRG	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	1889
Bsp1286I	GDGCHC	2 cut(s)	285, 742
Bsp143I	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	2 cut(s)	1110, 1441
BspACI	CCGC	4 cut(s)	524, 664, 967, 1574
BspANI	GGCC	2 cut(s)	477, 1464
BspCNI	CTCAG	3 cut(s)	24, 56, 203
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	3 cut(s)	984, 1701, 1935
BspMI	ACCTGC	2 cut(s)	137, 2007
BspPI	GGATC	5 cut(s)	262, 711, 1584, 1928, 1941
BspT104I	TTCGAA	1 cut(s)	1889
BspT107I	GGYRCC	1 cut(s)	982
BspTNI	GGTCTC	2 cut(s)	326, 388
BsrDI	GCAATG	4 cut(s)	216, 526, 659, 1020
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	145, 1809
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	5 cut(s)	319, 1004, 1110, 1441, 1984
BssMI	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
BssT1I	CCWWGG	3 cut(s)	1110, 1441, 1984
Bst2UI	CCWGG	2 cut(s)	1290, 1818
Bst6I	CTCTTC	1 cut(s)	1368
BstAPI	GCANNNNNTGC	3 cut(s)	280, 1355, 1851
BstBAI	YACGTR	2 cut(s)	569, 653
BstBI	TTCGAA	1 cut(s)	1889
BstC8I	GCNNGC	5 cut(s)	1035, 1132, 1592, 1731, 1776
BstDEI	CTNAG	5 cut(s)	5, 11, 43, 190, 1242
BstDSI	CCRYGG	3 cut(s)	1004, 1110, 1441
BstF5I	GGATG	4 cut(s)	315, 568, 1879, 1978
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	9 cut(s)	174, 270, 706, 1020, 1195, 1410, 1579, 1899, 1936
BstMAI	GTCTC	8 cut(s)	35, 326, 388, 591, 764, 886, 913, 1863
BstMBI	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
BstMWI	GCNNNNNNNGC	7 cut(s)	227, 280, 656, 872, 1355, 1775, 1851
BstNI	CCWGG	2 cut(s)	1290, 1818
BstNSI	RCATGY	7 cut(s)	841, 1134, 1237, 1288, 1349, 1437, 1594
BstPAI	GACNNNNGTC	1 cut(s)	756
BstSCI	CCNGG	2 cut(s)	1288, 1816
BstSLI	GKGCMC	2 cut(s)	285, 742
BstV1I	GCAGC	4 cut(s)	878, 1106, 1583, 1688
BstV2I	GAAGAC	1 cut(s)	1817
BstX2I	RGATCY	4 cut(s)	267, 1576, 1896, 1933
BstXI	CCANNNNNNTGG	1 cut(s)	1712
BstYI	RGATCY	4 cut(s)	267, 1576, 1896, 1933
BsuRI	GGCC	2 cut(s)	477, 1464
BtgI	CCRYGG	3 cut(s)	1004, 1110, 1441
BtsCI	GGATG	4 cut(s)	315, 568, 1879, 1978
BtsI	GCAGTG	1 cut(s)	1852
BtsIMutI	CAGTG	1 cut(s)	1852
BveI	ACCTGC	2 cut(s)	137, 2007
Cac8I	GCNNGC	5 cut(s)	1035, 1132, 1592, 1731, 1776
CaiI	CAGNNNCTG	1 cut(s)	1610
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	1537, 1699
Csp6I	GTAC	2 cut(s)	841, 976
CspCI	CAANNNNNGTGG	2 cut(s)	909, 944
CviQI	GTAC	2 cut(s)	841, 976
DdeI	CTNAG	5 cut(s)	5, 11, 43, 190, 1242
DpnI	GATC	9 cut(s)	173, 269, 705, 1019, 1194, 1409, 1578, 1898, 1935
DpnII	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
DraIII	CACNNNGTG	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	21
DriI	GACNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	1368
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	1368
Eco130I	CCWWGG	3 cut(s)	1110, 1441, 1984
Eco31I	GGTCTC	2 cut(s)	326, 388
Eco47I	GGWCC	2 cut(s)	1537, 1699
Eco57I	CTGAAG	2 cut(s)	1415, 1974
Eco72I	CACGTG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	1288, 1816
EcoT14I	CCWWGG	3 cut(s)	1110, 1441, 1984
ErhI	CCWWGG	3 cut(s)	1110, 1441, 1984
Esp3I	CGTCTC	2 cut(s)	35, 913
FalI	AAGNNNNNCTT	2 cut(s)	1663, 1695
FaqI	GGGAC	3 cut(s)	127, 1231, 1404
FauI	CCCGC	1 cut(s)	657
FauNDI	CATATG	1 cut(s)	534
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	525, 867, 1120, 1572, 1677
FokI	GGATG	4 cut(s)	302, 575, 1866, 1985
Fsp4HI	GCNGC	5 cut(s)	525, 867, 1120, 1572, 1677
FspBI	CTAG	7 cut(s)	207, 425, 800, 1038, 1083, 1544, 2013
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	5 cut(s)	525, 867, 1120, 1572, 1677
GsuI	CTGGAG	1 cut(s)	1826
HaeIII	GGCC	2 cut(s)	477, 1464
HapII	CCGG	4 cut(s)	180, 398, 701, 1937
HhaI	GCGC	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	1231, 1920
HindII	GTYRAC	2 cut(s)	1231, 1920
HindIII	AAGCTT	1 cut(s)	1685
HpaI	GTTAAC	1 cut(s)	1920
HpaII	CCGG	4 cut(s)	180, 398, 701, 1937
HphI	GGTGA	4 cut(s)	956, 1163, 1849, 2000
Hpy166II	GTNNAC	4 cut(s)	283, 1231, 1537, 1920
Hpy188III	TCNNGA	6 cut(s)	393, 763, 860, 1070, 1097, 1691
Hpy8I	GTNNAC	4 cut(s)	283, 1231, 1537, 1920
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	6 cut(s)	232, 307, 1454, 1550, 1759, 1786
HpyCH4IV	ACGT	6 cut(s)	22, 568, 652, 1042, 1206, 1412
HpyF10VI	GCNNNNNNNGC	7 cut(s)	227, 280, 656, 872, 1355, 1775, 1851
HpyF3I	CTNAG	5 cut(s)	5, 11, 43, 190, 1242
HpySE526I	ACGT	6 cut(s)	22, 568, 652, 1042, 1206, 1412
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	171
KspAI	GTTAAC	1 cut(s)	1920
Kzo9I	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
LmnI	GCTCC	2 cut(s)	350, 1145
Lsp1109I	GCAGC	4 cut(s)	878, 1106, 1583, 1688
LweI	GCATC	3 cut(s)	553, 1345, 1597
MaeI	CTAG	7 cut(s)	207, 425, 800, 1038, 1083, 1544, 2013
MaeII	ACGT	6 cut(s)	22, 568, 652, 1042, 1206, 1412
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	9 cut(s)	173, 269, 705, 1019, 1194, 1409, 1578, 1898, 1935
MboI	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
MboII	GAAGA	6 cut(s)	242, 723, 1385, 1469, 1795, 1822
MfeI	CAATTG	2 cut(s)	67, 1830
MflI	RGATCY	4 cut(s)	267, 1576, 1896, 1933
MhlI	GDGCHC	2 cut(s)	285, 742
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	4 cut(s)	766, 802, 1807, 1970
MmeI	TCCRAC	2 cut(s)	1138, 1677
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	5 cut(s)	1338, 1481, 1515, 1584, 1919
MslI	CAYNNNNRTG	4 cut(s)	630, 1350, 1653, 1710
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	1574
MspI	CCGG	4 cut(s)	180, 398, 701, 1937
MspR9I	CCNGG	2 cut(s)	1290, 1818
MunI	CAATTG	2 cut(s)	67, 1830
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	2 cut(s)	1290, 1818
MwoI	GCNNNNNNNGC	7 cut(s)	227, 280, 656, 872, 1355, 1775, 1851
NcoI	CCATGG	2 cut(s)	1110, 1441
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
NlaIV	GGNNCC	3 cut(s)	984, 1701, 1935
NmuCI	GTSAC	1 cut(s)	709
NspI	RCATGY	7 cut(s)	841, 1134, 1237, 1288, 1349, 1437, 1594
NspV	TTCGAA	1 cut(s)	1889
OliI	CACNNNNGTG	2 cut(s)	1653, 1710
PaeI	GCATGC	2 cut(s)	1134, 1594
PagI	TCATGA	1 cut(s)	1069
PaqCI	CACCTGC	1 cut(s)	2007
PciI	ACATGT	2 cut(s)	837, 1233
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	6 cut(s)	429, 500, 529, 622, 856, 1168
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	526, 868, 1121, 1573, 1678
PleI	GAGTC	4 cut(s)	765, 802, 1807, 1970
PmaCI	CACGTG	1 cut(s)	653
PmlI	CACGTG	1 cut(s)	653
PpsI	GAGTC	4 cut(s)	765, 802, 1807, 1970
Ppu21I	YACGTR	2 cut(s)	569, 653
PscI	ACATGT	2 cut(s)	837, 1233
PshAI	GACNNNNGTC	1 cut(s)	756
PshBI	ATTAAT	1 cut(s)	1584
Psp1406I	AACGTT	1 cut(s)	1206
Psp6I	CCWGG	2 cut(s)	1288, 1816
PspCI	CACGTG	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	1288, 1816
PspN4I	GGNNCC	3 cut(s)	984, 1701, 1935
PspPI	GGNCC	2 cut(s)	1537, 1699
PstNI	CAGNNNCTG	1 cut(s)	1610
PsuI	RGATCY	4 cut(s)	267, 1576, 1896, 1933
RsaI	GTAC	2 cut(s)	842, 977
RsaNI	GTAC	2 cut(s)	841, 976
RseI	CAYNNNNRTG	4 cut(s)	630, 1350, 1653, 1710
SaqAI	TTAA	5 cut(s)	1338, 1481, 1515, 1584, 1919
SatI	GCNGC	5 cut(s)	525, 867, 1120, 1572, 1677
Sau3AI	GATC	9 cut(s)	171, 267, 703, 1017, 1192, 1407, 1576, 1896, 1933
Sau96I	GGNCC	2 cut(s)	1537, 1699
SchI	GAGTC	4 cut(s)	766, 802, 1807, 1970
ScrFI	CCNGG	2 cut(s)	1290, 1818
SduI	GDGCHC	2 cut(s)	285, 742
SfaNI	GCATC	3 cut(s)	553, 1345, 1597
SfuI	TTCGAA	1 cut(s)	1889
SinI	GGWCC	2 cut(s)	1537, 1699
SmiMI	CAYNNNNRTG	4 cut(s)	630, 1350, 1653, 1710
SmlI	CTYRAG	5 cut(s)	746, 754, 860, 870, 1691
SmoI	CTYRAG	5 cut(s)	746, 754, 860, 870, 1691
SphI	GCATGC	2 cut(s)	1134, 1594
SsiI	CCGC	4 cut(s)	524, 664, 967, 1574
SspI	AATATT	1 cut(s)	1273
SspMI	CTAG	7 cut(s)	207, 425, 800, 1038, 1083, 1544, 2013
StyD4I	CCNGG	2 cut(s)	1288, 1816
StyI	CCWWGG	3 cut(s)	1110, 1441, 1984
TaiI	ACGT	6 cut(s)	25, 571, 655, 1045, 1209, 1415
TaqI	TCGA	3 cut(s)	392, 579, 1889
TaqII	GACCGA	1 cut(s)	350
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	6 cut(s)	429, 500, 529, 622, 856, 1168
Tru1I	TTAA	5 cut(s)	1338, 1481, 1515, 1584, 1919
Tru9I	TTAA	5 cut(s)	1338, 1481, 1515, 1584, 1919
TscAI	CASTG	1 cut(s)	1852
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	4 cut(s)	866, 1119, 1571, 1676
Tsp45I	GTSAC	1 cut(s)	709
TspRI	CASTG	1 cut(s)	1852
Van91I	CCANNNNNTGG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	1537, 1699
VspI	ATTAAT	1 cut(s)	1584
XapI	RAATTY	8 cut(s)	89, 451, 613, 770, 1493, 1716, 1994, 2005
XceI	RCATGY	7 cut(s)	841, 1134, 1237, 1288, 1349, 1437, 1594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XspI	CTAG	7 cut(s)	207, 425, 800, 1038, 1083, 1544, 2013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.