Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Reverse (-)

4649718 .. 4652251

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGACTCGTGCATTTTCAAGATCAAAGTTCGCAATTTTCTCCTCGATACTCCTTCGTGGCCTAAAAAGAACAACCACCCAAGAGACCCCACTGCTTCGAAAATTCAGAATTCCAGAATCAGAAATCGAGTCGTCGAAACCCATTTGTGGGTTTAGGCTATACCACGATGGGAGGCCGAGAGGACCGCTTTGGAGGGGCAAGAAGCTGATTGGCAAAGAAGCGCTTTATGTGATATCGGGTTTGAAGCGGTTCAAGGATGACGAAGAGAAGCTTGGCAAGTTTATAAAGAACCATGTTTTGAGACTCTTGAAGATGGATTTGATTGCTGTTCTCACTGAGCTTGAGCGTCAAGAAGAGGTCAATTTGGCAATTAAGGTGTTTAATGTGATTCGAAAGCAAGATTGGTACAATCCTGATGTCTATCTGTATAAAGACTTAATCATTTCATTAGCAAGATCTAAGAAAATGGATGATGTTATGCTGCTGTGGGACGGCATGAAAAAGGAGGATCTATTCCCTGATTCTCAAACATATACAGAAGTTATTAGGGGTTTTTTGAGCTCTGGTTCTCCTGCCGATGCAATGAACATATATGAAGACATGAAGAACTCTCCAGATCCACCAGAGGAGCTACCATTCCGTATTTTGTTGAAGGGGCTTCTACCACACCCCCTTTTGAGAAACAGAGTCAAGCAAGACTTTGAGGAGCTCTTTCCTGAACAGCATGTGTATGATCCTCCGGAAGAGATATTTGGTGTGCGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

257

Amino Acids

29.92

Weight (kDa)

9.02

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	2 cut(s)	188, 250
AclWI	GGATC	3 cut(s)	519, 614, 731
AcsI	RAATTY	2 cut(s)	104, 111
AfaI	GTAC	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	149, 150
AgsI	TTSAA	5 cut(s)	21, 247, 256, 313, 655
AjuI	GAANNNNNNNTTGG	6 cut(s)	258, 290, 388, 420, 738, 770
AluBI	AGCT	6 cut(s)	208, 274, 343, 564, 634, 712
AluI	AGCT	6 cut(s)	208, 274, 343, 564, 634, 712
Alw21I	GWGCWC	2 cut(s)	566, 714
Alw26I	GTCTC	2 cut(s)	80, 298
AlwI	GGATC	3 cut(s)	519, 614, 731
Aor13HI	TCCGGA	1 cut(s)	742
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	61, 176
ApeKI	GCWGC	2 cut(s)	484, 765
ApoI	RAATTY	2 cut(s)	104, 111
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	226, 765
AspS9I	GGNCC	1 cut(s)	185
AsuII	TTCGAA	2 cut(s)	100, 394
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	566, 714
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	566, 714
BbvI	GCAGC	2 cut(s)	471, 752
BccI	CCATC	2 cut(s)	164, 310
BceAI	ACGGC	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	80, 298
BfoI	RGCGCY	1 cut(s)	227
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	485, 766
BlsI	GCNGC	2 cut(s)	486, 767
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	600
Bpu14I	TTCGAA	2 cut(s)	100, 394
BpuEI	CTTGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 150
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	742
BseGI	GGATG	2 cut(s)	265, 478
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	149, 150
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	3 cut(s)	34, 644, 722
BseXI	GCAGC	2 cut(s)	471, 752
BshFI	GGCC	2 cut(s)	63, 178
BsiHKAI	GWGCWC	2 cut(s)	566, 714
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	149, 150
BsmAI	GTCTC	2 cut(s)	80, 298
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	63, 178
Bso31I	GGTCTC	1 cut(s)	80
Bsp119I	TTCGAA	2 cut(s)	100, 394
Bsp1286I	GDGCHC	2 cut(s)	566, 714
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	5 cut(s)	23, 458, 511, 619, 736
BspACI	CCGC	2 cut(s)	188, 250
BspANI	GGCC	2 cut(s)	63, 178
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	742
BspPI	GGATC	3 cut(s)	519, 614, 731
BspT104I	TTCGAA	2 cut(s)	100, 394
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	591
BssMI	GATC	5 cut(s)	23, 458, 511, 619, 736
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst6I	CTCTTC	3 cut(s)	261, 351, 741
BstBI	TTCGAA	2 cut(s)	100, 394
BstDEI	CTNAG	2 cut(s)	339, 462
BstF5I	GGATG	2 cut(s)	265, 478
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 765
BstKTI	GATC	5 cut(s)	26, 461, 514, 622, 739
BstMAI	GTCTC	2 cut(s)	80, 298
BstMBI	GATC	5 cut(s)	23, 458, 511, 619, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	471, 752
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	3 cut(s)	458, 511, 619
BstYI	RGATCY	3 cut(s)	458, 511, 619
BsuRI	GGCC	2 cut(s)	63, 178
BtsCI	GGATG	2 cut(s)	265, 478
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	92, 336
CfoI	GCGC	2 cut(s)	226, 765
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	4 cut(s)	296, 499, 604, 728
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	339, 462
DpnI	GATC	5 cut(s)	25, 460, 513, 621, 738
DpnII	GATC	5 cut(s)	23, 458, 511, 619, 736
Eam1104I	CTCTTC	3 cut(s)	261, 351, 741
EarI	CTCTTC	3 cut(s)	261, 351, 741
Ecl136II	GAGCTC	2 cut(s)	564, 712
Eco24I	GRGCYC	2 cut(s)	566, 714
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	225
Eco53kI	GAGCTC	2 cut(s)	564, 712
EcoICRI	GAGCTC	2 cut(s)	564, 712
EcoRI	GAATTC	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	566, 714
FaeI	CATG	4 cut(s)	299, 502, 607, 731
FalI	AAGNNNNNCTT	6 cut(s)	210, 242, 258, 290, 686, 718
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	4 cut(s)	295, 498, 603, 727
Fnu4HI	GCNGC	2 cut(s)	485, 766
FokI	GGATG	2 cut(s)	272, 485
FriOI	GRGCYC	2 cut(s)	566, 714
Fsp4HI	GCNGC	2 cut(s)	485, 766
GlaI	GCGC	2 cut(s)	225, 764
GluI	GCNGC	2 cut(s)	485, 766
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	63, 178
HapII	CCGG	1 cut(s)	743
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	2 cut(s)	226, 765
Hin1II	CATG	4 cut(s)	299, 502, 607, 731
Hin6I	GCGC	2 cut(s)	224, 763
HinP1I	GCGC	2 cut(s)	224, 763
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	7 cut(s)	7, 119, 131, 306, 391, 524, 690
HpaII	CCGG	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	110, 124
Hpy188III	TCNNGA	8 cut(s)	21, 116, 310, 353, 416, 617, 719, 743
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	65, 649
HpyCH4V	TGCA	2 cut(s)	14, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	339, 462
Hsp92II	CATG	4 cut(s)	299, 502, 607, 731
HspAI	GCGC	2 cut(s)	224, 763
Kpn2I	TCCGGA	1 cut(s)	742
Kzo9I	GATC	5 cut(s)	23, 458, 511, 619, 736
LmnI	GCTCC	2 cut(s)	631, 709
LpnPI	CCDG	9 cut(s)	129, 429, 534, 552, 588, 630, 639, 732, 756
Lsp1109I	GCAGC	2 cut(s)	471, 752
LweI	GCATC	1 cut(s)	571
MalI	GATC	5 cut(s)	25, 460, 513, 621, 738
MboI	GATC	5 cut(s)	23, 458, 511, 619, 736
MboII	GAAGA	6 cut(s)	278, 325, 368, 611, 619, 758
MflI	RGATCY	3 cut(s)	458, 511, 619
MhlI	GDGCHC	2 cut(s)	566, 714
MluCI	AATT	5 cut(s)	36, 104, 111, 364, 372
MlyI	GAGTC	3 cut(s)	140, 300, 699
MnlI	CCTC	9 cut(s)	55, 168, 176, 189, 352, 502, 622, 700, 750
MroI	TCCGGA	1 cut(s)	742
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	3 cut(s)	375, 384, 440
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	23, 458, 511, 619, 736
NlaIII	CATG	4 cut(s)	299, 502, 607, 731
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	731
NspV	TTCGAA	2 cut(s)	100, 394
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	119, 391, 524
PkrI	GCNGC	2 cut(s)	486, 767
PleI	GAGTC	3 cut(s)	139, 300, 698
PpsI	GAGTC	3 cut(s)	139, 300, 698
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	2 cut(s)	566, 714
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	3 cut(s)	458, 511, 619
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	2 cut(s)	566, 714
SaqAI	TTAA	3 cut(s)	375, 384, 440
SatI	GCNGC	2 cut(s)	485, 766
Sau3AI	GATC	5 cut(s)	23, 458, 511, 619, 736
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	3 cut(s)	140, 300, 699
SduI	GDGCHC	2 cut(s)	566, 714
SetI	ASST	8 cut(s)	210, 276, 345, 363, 381, 566, 636, 714
SfaNI	GCATC	1 cut(s)	571
SfuI	TTCGAA	2 cut(s)	100, 394
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	5 cut(s)	36, 104, 111, 364, 372
SsiI	CCGC	2 cut(s)	188, 250
SstI	GAGCTC	2 cut(s)	566, 714
TaqI	TCGA	5 cut(s)	47, 100, 129, 137, 394
TasI	AATT	5 cut(s)	36, 104, 111, 364, 372
TfiI	GAWTC	3 cut(s)	119, 391, 524
Tru1I	TTAA	3 cut(s)	375, 384, 440
Tru9I	TTAA	3 cut(s)	375, 384, 440
TscAI	CASTG	2 cut(s)	99, 343
TseI	GCWGC	2 cut(s)	484, 765
TspDTI	ATGAA	5 cut(s)	438, 515, 602, 612, 620
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	99, 343
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	104, 111
XceI	RCATGY	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.