Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Reverse (-)

7605208 .. 7607125

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1091300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAATGGCGACTCGTGCATTTTCGCGATCGAAGTTCGCATTTTTATCTTCAATACTCCTCCAAAACCTGAAAACAACGCCCATCAAATCAAACCCAATGCTTCTAAAATCCACAGAACTAGCACTCGAGTCCTGGAGGCCCATTTGTGGGCTGAGGCTGTATCACGACGGGAGGCCCAGAGGACCGCTCTGGAGGGGCAAAAAGCTGATCGGCAAAGAAGCGCTTTTCGTAATCTCGGGTTTGAAGCTGTTCGAGGACGTGGAAGAGAAGCTCGGGAAGTTTGTAAATACCCACGTTTTGAGACTGTTGAAGACGGATATGATTGCTGTTCTCACTGAGCTCGAGCGCCAGGAAGAAGTCGCTTTGGCAATTAAGGTATTTAATGTTATTCGAAAGCAAGACTGGTACAAACCGGATGTCTATCTGTATAAGGACTTAATTATTGCATTAGCAAGATCTAAGAAAATGGAGGATGTTATGCTACTGTGGGACAGCGTGAAAAGGGAGGATCTGTTTCCTGATTCTCAAACATATACAGAAGTTATCAGGGGTTTTTTGAACTCTGGTTGTCCTACAGATGCAATGAACATTTATGAGGACATGAAGCAGTCTCCAGATCCACCAGAGGAGCTGCCATTCCGGATTTTGTTAAAGGGACTTCTGCCACACCCCCTTTTGAGAAACAGAGTCAAGCAAGACTTTGAGGAGCTGTTTCCCGAACAGCATGTGTATGATCCTCCGGAAGAGATATTTGGCATGCGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

257

Amino Acids

29.72

Weight (kDa)

8.39

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	139 - 187	3.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AccII	CGCG	2 cut(s)	28, 765
AccIII	TCCGGA	2 cut(s)	642, 742
AciI	CCGC	2 cut(s)	188, 765
AclWI	GGATC	3 cut(s)	519, 614, 731
AfaI	GTAC	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	149, 150
AgsI	TTSAA	4 cut(s)	54, 247, 313, 562
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	134, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	6 cut(s)	208, 250, 274, 343, 634, 712
AluI	AGCT	6 cut(s)	208, 250, 274, 343, 634, 712
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	2 cut(s)	298, 618
AlwI	GGATC	3 cut(s)	519, 614, 731
Ama87I	CYCGRG	4 cut(s)	128, 238, 275, 344
Aor13HI	TCCGGA	2 cut(s)	642, 742
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	140, 176
ApeKI	GCWGC	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	3 cut(s)	226, 351, 765
AspS9I	GGNCC	3 cut(s)	141, 177, 185
AsuII	TTCGAA	1 cut(s)	394
AvaI	CYCGRG	4 cut(s)	128, 238, 275, 344
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	136, 353
BcoDI	GTCTC	2 cut(s)	298, 618
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	2 cut(s)	227, 352
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	635, 766
BlsI	GCNGC	2 cut(s)	636, 767
Bme1390I	CCNGG	2 cut(s)	136, 353
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	4 cut(s)	128, 238, 275, 344
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	141, 177, 185
BmrFI	CCNGG	2 cut(s)	136, 353
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	3 cut(s)	157, 214, 600
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	423
BsaWI	WCCGGW	3 cut(s)	415, 642, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 150
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	2 cut(s)	12, 591
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	2 cut(s)	642, 742
BseBI	CCWGG	2 cut(s)	136, 353
BseGI	GGATG	2 cut(s)	424, 481
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	149, 150
BseMI	GCAATG	2 cut(s)	12, 591
BseMII	CTCAG	2 cut(s)	146, 330
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	3 cut(s)	50, 644, 722
BseXI	GCAGC	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	28, 765
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	142, 178
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	4 cut(s)	128, 238, 275, 344
BsiSI	CCGG	3 cut(s)	416, 643, 743
BslFI	GGGAC	2 cut(s)	506, 672
BslI	CCNNNNNNNGG	2 cut(s)	149, 150
BsmAI	GTCTC	2 cut(s)	298, 618
BsmFI	GGGAC	2 cut(s)	506, 672
BsnI	GGCC	2 cut(s)	142, 178
BsoBI	CYCGRG	4 cut(s)	128, 238, 275, 344
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp13I	TCCGGA	2 cut(s)	642, 742
Bsp143I	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
Bsp68I	TCGCGA	1 cut(s)	28
BspACI	CCGC	2 cut(s)	188, 765
BspANI	GGCC	2 cut(s)	142, 178
BspCNI	CTCAG	2 cut(s)	147, 331
BspEI	TCCGGA	2 cut(s)	642, 742
BspFNI	CGCG	2 cut(s)	28, 765
BspPI	GGATC	3 cut(s)	519, 614, 731
BspT104I	TTCGAA	1 cut(s)	394
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	12, 591
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	136, 353
Bst4CI	ACNGT	2 cut(s)	309, 489
Bst6I	CTCTTC	2 cut(s)	261, 741
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	3 cut(s)	155, 339, 462
BstF5I	GGATG	2 cut(s)	424, 481
BstFNI	CGCG	2 cut(s)	28, 765
BstH2I	RGCGCY	2 cut(s)	227, 352
BstHHI	GCGC	3 cut(s)	226, 351, 765
BstKTI	GATC	6 cut(s)	32, 213, 461, 514, 622, 739
BstMAI	GTCTC	2 cut(s)	298, 618
BstMBI	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 765
BstNI	CCWGG	2 cut(s)	136, 353
BstNSI	RCATGY	2 cut(s)	731, 763
BstSCI	CCNGG	2 cut(s)	134, 351
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	2 cut(s)	28, 765
BstV1I	GCAGC	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	3 cut(s)	458, 511, 619
BstYI	RGATCY	3 cut(s)	458, 511, 619
BsuRI	GGCC	2 cut(s)	142, 178
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	424, 481
BtsIMutI	CAGTG	1 cut(s)	336
BtuMI	TCGCGA	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	761
CfoI	GCGC	3 cut(s)	226, 351, 765
Cfr13I	GGNCC	3 cut(s)	141, 177, 185
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	604, 728, 760
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	155, 339, 462
DpnI	GATC	6 cut(s)	31, 212, 460, 513, 621, 738
DpnII	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
Eam1104I	CTCTTC	2 cut(s)	261, 741
EarI	CTCTTC	2 cut(s)	261, 741
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	343
Eco88I	CYCGRG	4 cut(s)	128, 238, 275, 344
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	134, 351
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	3 cut(s)	607, 731, 763
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 686, 718
FaqI	GGGAC	2 cut(s)	506, 672
FatI	CATG	3 cut(s)	603, 727, 759
Fnu4HI	GCNGC	2 cut(s)	635, 766
FokI	GGATG	2 cut(s)	431, 488
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	635, 766
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	3 cut(s)	225, 350, 764
GluI	GCNGC	2 cut(s)	635, 766
GsuI	CTGGAG	3 cut(s)	157, 214, 600
HaeII	RGCGCY	2 cut(s)	227, 352
HaeIII	GGCC	2 cut(s)	142, 178
HapII	CCGG	3 cut(s)	416, 643, 743
HhaI	GCGC	3 cut(s)	226, 351, 765
Hin1II	CATG	3 cut(s)	607, 731, 763
Hin6I	GCGC	3 cut(s)	224, 349, 763
HinP1I	GCGC	3 cut(s)	224, 349, 763
HinfI	GANTC	4 cut(s)	13, 131, 524, 690
HpaII	CCGG	3 cut(s)	416, 643, 743
Hpy188III	TCNNGA	9 cut(s)	27, 167, 193, 277, 521, 617, 643, 719, 743
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	309, 489
HpyCH4IV	ACGT	2 cut(s)	261, 297
HpyCH4V	TGCA	3 cut(s)	20, 449, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 765
HpyF3I	CTNAG	3 cut(s)	155, 339, 462
HpySE526I	ACGT	2 cut(s)	261, 297
Hsp92II	CATG	3 cut(s)	607, 731, 763
HspAI	GCGC	3 cut(s)	224, 349, 763
Kpn2I	TCCGGA	2 cut(s)	642, 742
Kzo9I	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
LmnI	GCTCC	2 cut(s)	631, 709
Lsp1109I	GCAGC	1 cut(s)	621
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	261, 297
MalI	GATC	6 cut(s)	31, 212, 460, 513, 621, 738
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
MboII	GAAGA	5 cut(s)	42, 278, 325, 368, 758
MflI	RGATCY	3 cut(s)	458, 511, 619
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	2 cut(s)	372, 441
MlyI	GAGTC	3 cut(s)	7, 140, 699
MroI	TCCGGA	2 cut(s)	642, 742
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	375, 384, 440, 653
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	3 cut(s)	416, 643, 743
MspR9I	CCNGG	2 cut(s)	136, 353
MvaI	CCWGG	2 cut(s)	136, 353
MvnI	CGCG	2 cut(s)	28, 765
MwoI	GCNNNNNNNGC	2 cut(s)	17, 765
NdeII	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
NlaIII	CATG	3 cut(s)	607, 731, 763
NruI	TCGCGA	1 cut(s)	28
NspI	RCATGY	2 cut(s)	731, 763
NspV	TTCGAA	1 cut(s)	394
PaeI	GCATGC	1 cut(s)	763
PaeR7I	CTCGAG	2 cut(s)	128, 344
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	636, 767
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	3 cut(s)	7, 139, 698
PpsI	GAGTC	3 cut(s)	7, 139, 698
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	134, 351
PspGI	CCWGG	2 cut(s)	134, 351
PspPI	GGNCC	3 cut(s)	141, 177, 185
PspXI	VCTCGAGB	2 cut(s)	128, 344
PsuI	RGATCY	3 cut(s)	458, 511, 619
PvuI	CGATCG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	28
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	375, 384, 440, 653
SatI	GCNGC	2 cut(s)	635, 766
Sau3AI	GATC	6 cut(s)	29, 210, 458, 511, 619, 736
Sau96I	GGNCC	3 cut(s)	141, 177, 185
SchI	GAGTC	3 cut(s)	7, 140, 699
ScrFI	CCNGG	2 cut(s)	136, 353
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	2 cut(s)	128, 344
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	2 cut(s)	128, 344
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	128, 344
SmoI	CTYRAG	2 cut(s)	128, 344
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	2 cut(s)	372, 441
SsiI	CCGC	2 cut(s)	188, 765
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	134, 351
TaaI	ACNGT	2 cut(s)	309, 489
TaiI	ACGT	2 cut(s)	264, 300
TaqI	TCGA	5 cut(s)	32, 129, 255, 345, 394
TasI	AATT	2 cut(s)	372, 441
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	4 cut(s)	375, 384, 440, 653
Tru9I	TTAA	4 cut(s)	375, 384, 440, 653
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	602, 620
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	185
XceI	RCATGY	2 cut(s)	731, 763
XhoI	CTCGAG	2 cut(s)	128, 344
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.