Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Reverse (-)

7622117 .. 7622341

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGAGGATGTTATGCTACTGTGCGACAGCATGAAAAAGGAGGATCTGTTTCCTGATTCTCAAACATATACAGAAGTTGTCAGGGGTTTTTTGAACTCTGGTTGTCCTGCAGATGCAATGAACATTTATGAGGACATGAAGCAGTCTCCAGATCCGCCGGAGGATCTAAGAAAAAATTGTTTCTTCTCCCTCTTTCCTTTGGCTGCAGCAGAACTTGTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

75

Amino Acids

8.37

Weight (kDa)

4.12

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	3 cut(s)	51, 146, 171
AgsI	TTSAA	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	3 cut(s)	51, 146, 171
ApeKI	GCWGC	2 cut(s)	203, 206
BbvI	GCAGC	2 cut(s)	190, 218
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	108, 204
BisI	GCNGC	2 cut(s)	204, 207
BlsI	GCNGC	2 cut(s)	205, 208
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse3DI	GCAATG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	190, 218
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	43, 151, 163
BspACI	CCGC	1 cut(s)	155
BspMAI	CTGCAG	2 cut(s)	112, 208
BspPI	GGATC	3 cut(s)	51, 146, 171
BsrDI	GCAATG	1 cut(s)	123
BssMI	GATC	3 cut(s)	43, 151, 163
Bst4CI	ACNGT	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	46, 154, 166
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	43, 151, 163
BstSFI	CTRYAG	2 cut(s)	108, 204
BstV1I	GCAGC	2 cut(s)	190, 218
BstX2I	RGATCY	3 cut(s)	43, 151, 163
BstYI	RGATCY	3 cut(s)	43, 151, 163
BtsCI	GGATG	1 cut(s)	13
CviAII	CATG	2 cut(s)	31, 136
CviJI	RGCY	1 cut(s)	203
CviKI_1	RGCY	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	3 cut(s)	45, 153, 165
DpnII	GATC	3 cut(s)	43, 151, 163
EciI	GGCGGA	1 cut(s)	144
FaeI	CATG	2 cut(s)	34, 139
FaiI	YATR	6 cut(s)	14, 32, 67, 69, 129, 137
FatI	CATG	2 cut(s)	30, 135
Fnu4HI	GCNGC	2 cut(s)	204, 207
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	204, 207
GluI	GCNGC	2 cut(s)	204, 207
GsuI	CTGGAG	1 cut(s)	132
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	34, 139
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	158
Hpy188III	TCNNGA	2 cut(s)	53, 149
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	110, 116, 206
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	34, 139
Kzo9I	GATC	3 cut(s)	43, 151, 163
LpnPI	CCDG	6 cut(s)	66, 67, 84, 120, 162, 171
Lsp1109I	GCAGC	2 cut(s)	190, 218
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	45, 153, 165
MboI	GATC	3 cut(s)	43, 151, 163
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	3 cut(s)	43, 151, 163
MluCI	AATT	1 cut(s)	175
MnlI	CCTC	4 cut(s)	34, 124, 154, 200
MseI	TTAA	1 cut(s)	223
MspI	CCGG	1 cut(s)	158
NdeII	GATC	3 cut(s)	43, 151, 163
NlaIII	CATG	2 cut(s)	34, 139
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	205, 208
PstI	CTGCAG	2 cut(s)	112, 208
PsuI	RGATCY	3 cut(s)	43, 151, 163
SaqAI	TTAA	1 cut(s)	223
SatI	GCNGC	2 cut(s)	204, 207
Sau3AI	GATC	3 cut(s)	43, 151, 163
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	108, 204
SgeI	CNNG	8 cut(s)	43, 65, 94, 111, 119, 148, 161, 170
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	21
TasI	AATT	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	223
Tru9I	TTAA	1 cut(s)	223
TseI	GCWGC	2 cut(s)	203, 206
TspDTI	ATGAA	3 cut(s)	47, 134, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.