Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Reverse (-)

5840932 .. 5842798

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCACTTTATAGTTTCTAAATTAAAAATATATATTTATAACAAGTGTATAAATATCACCGACCAACTCGTTCCCTTCATCACCCTCACTGCGGATCACCAACTCGTCCCCTTTACCAAACCTCCAATGGCGACTCGTGCATTTTGGCGATCAAAGTTCGCATTTTTCTCTTCAATACTCCTTCAAAACCTGAAAACGACGCCCATCAAGTCGACCCCAATGCTTCTAAAATCCACGGAACTTGAACTCGAGTCCTGGAGATCCATTCGTGGGCTGAGGCTGTATCACGACGGGAGCCCCAGAGGACCGCTCTGGAGGGGCAAAAAGCTGATCGGAAAAGAAGCGCTTTTCGTAATCTCGGGTTTGAAGCGGTTCGAGGACGACGAAGAGAAGCTCGAGAAGTTTGTAAATGCCCGCGTTTTGAGACTGTTGAAGATGGATATGATTGCTGTTCTCACTGAGCTCGAGCGCCAGGAAGAAGTCGCTTTGGCAATTAAGGTATTTAATGTTATTCGGAAGCAAGACTGGTACAAACCGAATGTCTATCTGTATAAGGACTTAATTATTGCATTAGCAAGATCTAAGAAAATGGAGGATGTTATGCTACCGTGGGACAGCATGAAAAAGGAGGATCTGTTTCCTGATTCTCAAACATATACGAAAGTTATCAGGGGTTTTTTGAACTCTAGTTGTCCTGCAGATGCAATGAACATTTATGAGGACATGAATCAGTCTCCAGATCCGCCGGACGAGCTGGCATTCCGGATTTTGTTGAAGGGCCTTCTGCCACATCCCCTTTTGAGAAACAGAGTCAAGCAAGACTTTGAGGAGCTGTTTCCCGAACAGCATGTTTACGATCCTCCGGAAGAGATTTGGCATGCGTGGCTGAGGTCTGCATTCTATGCTTTGCTCCTACTTCAATCTGTTGTAGAAATTAGCATGCGCTTCTCTCCACACAGATGTTATATTAATTTCATCGCCGGATTAAAAGTTATCTGGTTTCAGGGCTTAAATCTCTCTCTTCATTGGAGGGCTTCGTTGTATCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

351

Amino Acids

41.11

Weight (kDa)

9.18

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	179 - 227	3.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	2 cut(s)	762, 862
AciI	CCGC	5 cut(s)	92, 308, 370, 415, 743
AclWI	GGATC	5 cut(s)	102, 255, 639, 734, 851
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	530
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	91, 270
AgsI	TTSAA	8 cut(s)	174, 185, 245, 367, 433, 682, 775, 920
AjnI	CCWGG	2 cut(s)	254, 471
AluBI	AGCT	5 cut(s)	328, 394, 463, 754, 832
AluI	AGCT	5 cut(s)	328, 394, 463, 754, 832
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	418, 738
AlwI	GGATC	5 cut(s)	102, 255, 639, 734, 851
Ama87I	CYCGRG	4 cut(s)	248, 358, 395, 464
Aor13HI	TCCGGA	2 cut(s)	762, 862
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	1 cut(s)	778
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	346, 471, 945
AspS9I	GGNCC	2 cut(s)	305, 778
AsuHPI	GGTGA	3 cut(s)	49, 73, 89
AvaI	CYCGRG	4 cut(s)	248, 358, 395, 464
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	299, 465
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	465
BbvCI	CCTCAGC	2 cut(s)	275, 887
BccI	CCATC	2 cut(s)	212, 430
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	2 cut(s)	256, 473
BciVI	GTATCC	1 cut(s)	1053
BcoDI	GTCTC	2 cut(s)	418, 738
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	2 cut(s)	347, 472
BfuI	GTATCC	1 cut(s)	1053
BglII	AGATCT	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	256, 473
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	4 cut(s)	248, 358, 395, 464
BmgT120I	GGNCC	2 cut(s)	305, 778
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	256, 473
BmsI	GCATC	1 cut(s)	691
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpmI	CTGGAG	3 cut(s)	277, 334, 720
Bpu10I	CCTNAGC	2 cut(s)	275, 887
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	234, 608
BsaWI	WCCGGW	2 cut(s)	762, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 270
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	711
BseAI	TCCGGA	2 cut(s)	762, 862
BseBI	CCWGG	2 cut(s)	256, 473
BseDI	CCNNGG	2 cut(s)	234, 608
BseGI	GGATG	2 cut(s)	601, 790
BseLI	CCNNNNNNNGG	2 cut(s)	91, 270
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	3 cut(s)	266, 450, 878
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	1 cut(s)	842
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	4 cut(s)	248, 358, 395, 464
BsiSI	CCGG	4 cut(s)	746, 763, 863, 981
BslFI	GGGAC	2 cut(s)	92, 626
BslI	CCNNNNNNNGG	2 cut(s)	91, 270
BsmAI	GTCTC	2 cut(s)	418, 738
BsmFI	GGGAC	2 cut(s)	92, 626
BsmI	GAATGC	2 cut(s)	758, 896
BsnI	GGCC	1 cut(s)	780
BsoBI	CYCGRG	4 cut(s)	248, 358, 395, 464
Bsp1286I	GDGCHC	2 cut(s)	299, 465
Bsp13I	TCCGGA	2 cut(s)	762, 862
Bsp143I	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
BspACI	CCGC	5 cut(s)	92, 308, 370, 415, 743
BspANI	GGCC	1 cut(s)	780
BspCNI	CTCAG	3 cut(s)	267, 451, 879
BspEI	TCCGGA	2 cut(s)	762, 862
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	5 cut(s)	102, 255, 639, 734, 851
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	234, 608
BssMI	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
BssNI	GRCGYC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	256, 473
Bst4CI	ACNGT	2 cut(s)	429, 609
Bst6I	CTCTTC	4 cut(s)	175, 381, 861, 1026
BstACI	GRCGYC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstC8I	GCNNGC	4 cut(s)	415, 756, 879, 941
BstDEI	CTNAG	4 cut(s)	275, 459, 582, 887
BstDSI	CCRYGG	2 cut(s)	234, 608
BstF5I	GGATG	2 cut(s)	601, 790
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	2 cut(s)	347, 472
BstHHI	GCGC	3 cut(s)	346, 471, 945
BstKTI	GATC	8 cut(s)	97, 152, 263, 333, 581, 634, 742, 859
BstMAI	GTCTC	2 cut(s)	418, 738
BstMBI	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 751, 883, 902
BstNI	CCWGG	2 cut(s)	256, 473
BstNSI	RCATGY	3 cut(s)	851, 881, 943
BstSCI	CCNGG	2 cut(s)	254, 471
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	417
BstX2I	RGATCY	4 cut(s)	260, 578, 631, 739
BstYI	RGATCY	4 cut(s)	260, 578, 631, 739
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	1 cut(s)	780
BtgI	CCRYGG	2 cut(s)	234, 608
BtgZI	GCGATG	1 cut(s)	961
BtsCI	GGATG	2 cut(s)	601, 790
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 456
Cac8I	GCNNGC	4 cut(s)	415, 756, 879, 941
CfoI	GCGC	3 cut(s)	346, 471, 945
Cfr13I	GGNCC	2 cut(s)	305, 778
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	5 cut(s)	619, 724, 848, 878, 940
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	275, 459, 582, 887
DpnI	GATC	8 cut(s)	96, 151, 262, 332, 580, 633, 741, 858
DpnII	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
Eam1104I	CTCTTC	4 cut(s)	175, 381, 861, 1026
EarI	CTCTTC	4 cut(s)	175, 381, 861, 1026
EciI	GGCGGA	1 cut(s)	732
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	299, 465
Eco47I	GGWCC	1 cut(s)	305
Eco47III	AGCGCT	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	463
Eco88I	CYCGRG	4 cut(s)	248, 358, 395, 464
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	254, 471
EcoT38I	GRGCYC	2 cut(s)	299, 465
FaeI	CATG	5 cut(s)	622, 727, 851, 881, 943
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 806, 838
FaqI	GGGAC	2 cut(s)	92, 626
FatI	CATG	5 cut(s)	618, 723, 847, 877, 939
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	212
FokI	GGATG	2 cut(s)	608, 777
FriOI	GRGCYC	2 cut(s)	299, 465
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	3 cut(s)	345, 470, 944
GsuI	CTGGAG	3 cut(s)	277, 334, 720
HaeII	RGCGCY	2 cut(s)	347, 472
HaeIII	GGCC	1 cut(s)	780
HapII	CCGG	4 cut(s)	746, 763, 863, 981
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	3 cut(s)	346, 471, 945
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	622, 727, 851, 881, 943
Hin6I	GCGC	3 cut(s)	344, 469, 943
HinP1I	GCGC	3 cut(s)	344, 469, 943
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	5 cut(s)	133, 251, 644, 727, 810
HpaII	CCGG	4 cut(s)	746, 763, 863, 981
HphI	GGTGA	3 cut(s)	49, 73, 89
Hpy166II	GTNNAC	2 cut(s)	213, 853
Hpy188I	TCNGA	2 cut(s)	335, 516
Hpy188III	TCNNGA	8 cut(s)	287, 313, 397, 641, 737, 763, 839, 863
Hpy8I	GTNNAC	2 cut(s)	213, 853
Hpy99I	CGWCG	3 cut(s)	202, 293, 386
HpyAV	CCTTC	4 cut(s)	85, 191, 769, 791
HpyCH4III	ACNGT	2 cut(s)	429, 609
HpyCH4V	TGCA	6 cut(s)	4, 140, 569, 698, 704, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 751, 883, 902
HpyF3I	CTNAG	4 cut(s)	275, 459, 582, 887
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	622, 727, 851, 881, 943
HspAI	GCGC	3 cut(s)	344, 469, 943
Kpn2I	TCCGGA	2 cut(s)	762, 862
Kzo9I	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
LmnI	GCTCC	3 cut(s)	294, 829, 915
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	687
MalI	GATC	8 cut(s)	96, 151, 262, 332, 580, 633, 741, 858
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
MboII	GAAGA	6 cut(s)	162, 398, 445, 488, 878, 1013
MflI	RGATCY	4 cut(s)	260, 578, 631, 739
MhlI	GDGCHC	2 cut(s)	299, 465
MluCI	AATT	5 cut(s)	20, 492, 561, 933, 970
MlyI	GAGTC	3 cut(s)	127, 260, 819
MroI	TCCGGA	2 cut(s)	762, 862
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	7 cut(s)	23, 495, 504, 560, 969, 986, 1010
MslI	CAYNNNNRTG	1 cut(s)	958
MspI	CCGG	4 cut(s)	746, 763, 863, 981
MspR9I	CCNGG	2 cut(s)	256, 473
Mva1269I	GAATGC	2 cut(s)	758, 896
MvaI	CCWGG	2 cut(s)	256, 473
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	137, 751, 883, 902
NdeII	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
NlaIII	CATG	5 cut(s)	622, 727, 851, 881, 943
NlaIV	GGNNCC	1 cut(s)	296
NspI	RCATGY	3 cut(s)	851, 881, 943
PaeI	GCATGC	2 cut(s)	881, 943
PaeR7I	CTCGAG	3 cut(s)	248, 395, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	2 cut(s)	758, 896
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	644, 727
PfoI	TCCNGGA	1 cut(s)	254
PleI	GAGTC	3 cut(s)	127, 259, 818
PpsI	GAGTC	3 cut(s)	127, 259, 818
PshBI	ATTAAT	1 cut(s)	969
PsiI	TTATAA	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	254, 471
PspGI	CCWGG	2 cut(s)	254, 471
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	305, 778
PspXI	VCTCGAGB	2 cut(s)	248, 464
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	4 cut(s)	260, 578, 631, 739
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	958
SacI	GAGCTC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	211
SaqAI	TTAA	7 cut(s)	23, 495, 504, 560, 969, 986, 1010
Sau3AI	GATC	8 cut(s)	94, 149, 260, 330, 578, 631, 739, 856
Sau96I	GGNCC	2 cut(s)	305, 778
SchI	GAGTC	3 cut(s)	127, 260, 819
ScrFI	CCNGG	2 cut(s)	256, 473
SduI	GDGCHC	2 cut(s)	299, 465
SetI	ASST	9 cut(s)	124, 192, 330, 396, 465, 501, 756, 834, 893
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	696
Sfr274I	CTCGAG	3 cut(s)	248, 395, 464
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	3 cut(s)	248, 395, 464
SmiMI	CAYNNNNRTG	1 cut(s)	958
SmlI	CTYRAG	3 cut(s)	248, 395, 464
SmoI	CTYRAG	3 cut(s)	248, 395, 464
SphI	GCATGC	2 cut(s)	881, 943
Sse9I	AATT	5 cut(s)	20, 492, 561, 933, 970
SsiI	CCGC	5 cut(s)	92, 308, 370, 415, 743
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	254, 471
TaaI	ACNGT	2 cut(s)	429, 609
TaqI	TCGA	5 cut(s)	212, 249, 375, 396, 465
TasI	AATT	5 cut(s)	20, 492, 561, 933, 970
TfiI	GAWTC	2 cut(s)	644, 727
Tru1I	TTAA	7 cut(s)	23, 495, 504, 560, 969, 986, 1010
Tru9I	TTAA	7 cut(s)	23, 495, 504, 560, 969, 986, 1010
TscAI	CASTG	2 cut(s)	94, 463
TspDTI	ATGAA	6 cut(s)	67, 635, 722, 740, 964, 1013
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	94, 463
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	969
XceI	RCATGY	3 cut(s)	851, 881, 943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XhoI	CTCGAG	3 cut(s)	248, 395, 464
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.