Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006716

Physical Location & Seq

Genomic Coordinates Forward (+)

31856450 .. 31859350

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37180.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGTTCGTGCATTTTCAAGATCAAAATTTTCAACTTTCTCTTCAATCCTCCTTCAAGGTCTGAAAAGAACACCAATCCGAGAGAACCCGTTTCCTCCAAAACCCAGTTCTCCAGTATCACAAATCCAATCATGTCAGCCCATTTGTGGGTTTAGGCTATACCATGACGGAAGACCCAGAGGACCCCTTTGGAGGGGTAAGAAGCTGATCGGCAAAGAAGCCCTTTATGTGATTTCGGGTTTGAAAAGGTTTAAGGATGACGAGGAGACGCTTGGCAAGTTTATAAAGAGCCATGTTTTGAGGCTCCTCAAGTTGGATATGATTGCTGTTCTCACTGAGCTTGAGCGCCAAGAAGAGGTCAATTTGGCTATTAAGGTATTTAACGTGATTCGAAAGCAGGATTGGTACAAGCCTGATGTCTATCTGTATAAGGACTTGATCATTTCATTGGCAAAATCTAAGAAAATGGATGATGTTATGGTTCTATGGGATTGTATGAAAAAGGAAGATCTGTTTCCTGATTCTCAAACATTTACAGAAGTTATCAGGGGATTTTTGAGCACTGGTTCTCCTGCCGATGCAATGAACATATACGAGGACATGAAACAGTCTCCAGATCCACCAGAGCAGCTACCATTCCGGATTTTGTTAAAGGGACTTCTGCCACACCCCCTTTTGAGAAACAGAGTCAAGCAAGACTTTGAGGAGCTCTTTCCTGAACAACATGTATATGACCCTCCGCAAGAGATTTTTGGCTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

256

Amino Acids

29.54

Weight (kDa)

9.03

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	139 - 186	3.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46870 AT3G46870
fragaria_vesca	FvH4_3g37180 FvH4_3g37180
malus_domestica	MD03G1083200.v1.1 MD11G1091300.v1.1 MD11G1091600.v1.1
prunus_persica	Prupe.6G067500_v2.0.a1
pyrus_communis	pycom11g07590 pycom11g07630 pycom14g03070
rosa_chinensis	RchiOBHm_Chr5g0066921
rosa_laevigata	RLG00000035893
rosa_multiflora	Rmu_sc0008378.1_g000009 Rmu_sc0008378.1_g000011
rosa_roxburghii	Rroxscaffold_1G00014200
rosa_rugosa	Rorug05G0379700 Rorug05G0379800 Rorug05G0379900
rosa_samantha	Rh5AG439400 Rh5BG456400 Rh5CG478500 Rh5DG471200 Rh7AG391700 Rh7CG410600
rosa_wichuraiana	Rw5G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	2 cut(s)	5, 743
AclWI	GGATC	1 cut(s)	614
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	6 cut(s)	149, 150, 195, 196, 316, 358
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	21, 36, 48, 59, 247
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 388, 420
AluBI	AGCT	4 cut(s)	208, 343, 634, 712
AluI	AGCT	4 cut(s)	208, 343, 634, 712
Alw21I	GWGCWC	2 cut(s)	566, 714
Alw26I	GTCTC	2 cut(s)	263, 618
AlwI	GGATC	1 cut(s)	614
Aor13HI	TCCGGA	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	566, 714
BbvI	GCAGC	1 cut(s)	643
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	263, 618
BfoI	RGCGCY	1 cut(s)	352
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	187, 308, 760
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	571
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	99, 600
Bpu14I	TTCGAA	1 cut(s)	394
BpuEI	CTTGAG	2 cut(s)	296, 365
BsaBI	GATNNNNATC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	6 cut(s)	149, 150, 195, 196, 316, 358
Bse1I	ACTGG	3 cut(s)	108, 116, 571
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	642
BseGI	GGATG	2 cut(s)	265, 478
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	6 cut(s)	149, 150, 195, 196, 316, 358
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	108, 116, 571
BseRI	GAGGAG	3 cut(s)	281, 299, 722
BseXI	GCAGC	1 cut(s)	643
BsiHKAI	GWGCWC	2 cut(s)	566, 714
BsiSI	CCGG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	6 cut(s)	149, 150, 195, 196, 316, 358
BsmAI	GTCTC	2 cut(s)	263, 618
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	566, 714
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	5 cut(s)	23, 210, 441, 511, 619
BspACI	CCGC	2 cut(s)	5, 743
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	642
BspLI	GGNNCC	3 cut(s)	187, 308, 760
BspPI	GGATC	1 cut(s)	614
BspT104I	TTCGAA	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	108, 116, 571
BssMI	GATC	5 cut(s)	23, 210, 441, 511, 619
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	49, 351
BstBI	TTCGAA	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	339, 462
BstF5I	GGATG	2 cut(s)	265, 478
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	26, 213, 444, 514, 622
BstMAI	GTCTC	2 cut(s)	263, 618
BstMBI	GATC	5 cut(s)	23, 210, 441, 511, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	731
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	511, 619
BstYI	RGATCY	2 cut(s)	511, 619
BtsCI	GGATG	2 cut(s)	265, 478
BtsIMutI	CAGTG	2 cut(s)	336, 564
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	5 cut(s)	135, 167, 296, 604, 728
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	339, 462
DpnI	GATC	5 cut(s)	25, 212, 443, 513, 621
DpnII	GATC	5 cut(s)	23, 210, 441, 511, 619
Eam1104I	CTCTTC	2 cut(s)	49, 351
EarI	CTCTTC	2 cut(s)	49, 351
Ecl136II	GAGCTC	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	5 cut(s)	138, 170, 299, 607, 731
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 686, 718
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	5 cut(s)	134, 166, 295, 603, 727
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	2 cut(s)	272, 485
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	1 cut(s)	632
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	632
GsuI	CTGGAG	2 cut(s)	99, 600
HaeII	RGCGCY	1 cut(s)	352
HapII	CCGG	1 cut(s)	643
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	138, 170, 299, 607, 731
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	391, 524, 690
HpaII	CCGG	1 cut(s)	643
Hpy188I	TCNGA	2 cut(s)	66, 83
Hpy188III	TCNNGA	5 cut(s)	21, 521, 617, 643, 719
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	14, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	339, 462
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	138, 170, 299, 607, 731
HspAI	GCGC	1 cut(s)	349
Kpn2I	TCCGGA	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	23, 210, 441, 511, 619
LmnI	GCTCC	3 cut(s)	312, 709, 764
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	571
MaeII	ACGT	1 cut(s)	387
MalI	GATC	5 cut(s)	25, 212, 443, 513, 621
MboI	GATC	5 cut(s)	23, 210, 441, 511, 619
MboII	GAAGA	4 cut(s)	36, 186, 368, 521
MflI	RGATCY	2 cut(s)	511, 619
MhlI	GDGCHC	2 cut(s)	566, 714
MluCI	AATT	2 cut(s)	29, 364
MlyI	GAGTC	1 cut(s)	699
MmeI	TCCRAC	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	642
MseI	TTAA	4 cut(s)	255, 375, 384, 653
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	23, 210, 441, 511, 619
NlaIII	CATG	5 cut(s)	138, 170, 299, 607, 731
NlaIV	GGNNCC	3 cut(s)	187, 308, 760
NspI	RCATGY	1 cut(s)	731
NspV	TTCGAA	1 cut(s)	394
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	391, 524
PkrI	GCNGC	1 cut(s)	633
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	185
PscI	ACATGT	1 cut(s)	727
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	187, 308, 760
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	511, 619
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	4 cut(s)	255, 375, 384, 653
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	5 cut(s)	23, 210, 441, 511, 619
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	699
SduI	GDGCHC	2 cut(s)	566, 714
SetI	ASST	9 cut(s)	64, 210, 254, 345, 363, 381, 390, 636, 714
SfaNI	GCATC	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	311, 344
SmoI	CTYRAG	2 cut(s)	311, 344
Sse9I	AATT	2 cut(s)	29, 364
SsiI	CCGC	2 cut(s)	5, 743
SstI	GAGCTC	1 cut(s)	714
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	29, 364
TfiI	GAWTC	2 cut(s)	391, 524
Tru1I	TTAA	4 cut(s)	255, 375, 384, 653
Tru9I	TTAA	4 cut(s)	255, 375, 384, 653
TscAI	CASTG	2 cut(s)	343, 571
TseI	GCWGC	1 cut(s)	631
TspDTI	ATGAA	4 cut(s)	438, 515, 602, 620
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	343, 571
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.