Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005110

Physical Location & Seq

Genomic Coordinates Reverse (-)

17290873 .. 17298222

Gene Structure 7350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4044 bp

ATGAACAAAGTCGAAGCAGGCAATGAGCTCGGCTTCCGGGTCGGATTCTCCGGTCATGGTGGTCACCTCCGCGTCGAGCCTTTTTACACGGCCGAGAGAGACGACGCACTGAACTCACTTCCCGATTTTGTATCCCCTCCTGCATTTGCCAAGGAAACAAAAGAATCAATAAAGAAACATATTGAGGAGAAGTATCTCATCCCGAGACTGGAACCGGATCAGTTTTCTGCTGAAAAAGCTGAGAATCAGTGGGATTTTGATTGGTTTTCCAGGGTGAAGATGCCCCTTCAACCCTCTTTGCCAAGGTCCGTTGTGGTTCCGACTTGGGAGTTGCCATTCAGGCGTCAAAAAGAGGATACTGAGAACGGAGCATGGGAGCCAAAATCAGTGGAGGTGGATTTGTCAGAACAAATGTATGGGGATCAAGATTCTGGATTTTTTCCACGAATGGTAGGACCTCCGAAGGATTTTCTGAGAGGAAGTGTCAACAATCGCCCTTTCCGTCCAGGTGGCTTGGAGGATTCACAGTCTTCAGAGAGAGTCCTTCCAGAGGGTGTCTCTAGTGGCCAATGGGTACAGGAATTGCTCAATGGGGGTCCTGCTCAAACTGTTCCTCCTAGTTTTAAGCAGAGTTTAGATCTTGGAGATCTGATGCCATATCCCCAAACATGGAGCGTTTATGAGGATCATAGTTCACATGGCAATGCTTCAGATGAAAATTCGAGCAAGTTGTCTATTCAGTTTGACGATCTGTTCAAGAAGGCATGGGAAGAAGATACTTTCTCTGAACTTGAGGGAGATGATCATACAGCTGGATCTGAGTCTCCAAAGGCGGAAGCTGAACCCGATGCTAAAGCGAGCATAAGCAATGAAGTCAGCAAAGGACTAGAGACTGACGTCACTGTGCTGGATGAGATTTTGTCATCAGCAAAAACAGCAATAATGTCTGAAGAGGCAGTTACTGGGAGCAGCGATAAACAACTACGGAAAGAGGGATGGGCCACTAAAGGAGATAGCCAAGACATTGCAGACCGGTTTTATGAGCTTGTTCCTGACATGGCGATTGAATTCCCTTTCGAATTGGACAACTTTCAGAAGGAGGCTATCTGTTGTTTAGAAAAGGGAGAGTCTGTTTTTGTAGCAGCACATACATCGGCGGGGAAGACAGTTGTTGCAGAATATGCATTCGCTTTGGCCACCAAGCACTGTACACGAGCGGTTTATACTGCTCCAATTAAAACCATCAGCAACCAAAAATACAGAGATTTTTGTGGGAAGTTTGATGTAGGACTTCTCACAGGTGATGTTAGCATAAGGCCAGAGGCATCTTGTCTGATCATGACAACTGAAATATTAAGGTCAATGCTTTATCGTGGTGCTGATATCATACGTGATATAGAATGGGTTATATTTGATGAAGTTCACTATGTCAATGACGTAGAGAGAGGGGTTGTTTGGGAAGAAGTCATCATCATGTTGCCAAGGCATATAAATTTTGTCCTCCTTTCTGCAACGGTGCCAAACACATTTGAATTTGCTGATTGGATTGGCCGAACAAAACAAAAGGAGATACGTGTTACTGGCACGACAAAAAGACCAGTTCCCCTAGAGCATTGTCTTTTTTACTCTGGAGAACTCTACAAAGTTTGTGAGAACGAAGTTTTTCTTTCAAAAGGGATAAAGGATGCTAAAGATTCACAAAAGAAGAAGAATTCAAATGCAGTTAGTGTTGCACCTAAACAACAAATGGGATCTTCAGCTCATCAAGATGGGAGCAAATCTCAGAAACATGAAGCTCATTCTCGTGGCAAGCAGAATAAACACTCAAGTGTAAAAGATGTGGGAAAATCCTCTTACAGTGGTAACAGTCAGAACAATGGGGCATTTAGACGATCAGCAGCTTCAAATTGGTTACTGCTTATCAACAAGCTTTCAAAAATGTCCCTATTACCTGTGGTTGTCTTCTGTTTCTCGAAGAATTATTGTGATAGGTGTGCCGACGCCTTGACTGGGACCGACCTCACCAGTAGCTCTGAGAAAAGTGAAATCCGTGTCTTTTGCGATAAAGCGTTTTCAAGATTGAAAGGGTCTGATCGGAATTTACCTCAGGTTCTCAGACTCCAAAGCTTACTTCATAGAGGAATTGGTGTTCATCATGCTGGGCTGCTTCCAATTGTAAAGGAAGTTGTTGAAATGCTTTTTTGCCGTGGTGTTATTAAGGTGCTATTTTCAACGGAGACATTTGCCATGGGGGTTAATGCTCCAGCTAGAACGGTCGTTTTTGATGCTTTGAGGAAGTTTGATGGCAAGGAATTTAGACAATTGCTTCCTGGAGAGTACACTCAAATGGCAGGACGTGCTGGCAGAAGAGGACTTGACAAAACGGGCACAGTTGTTGTCATGTGTCGCGATGAAGTTCCAGATGAGAGTGATCTGAGGCGTGTAATTGTTGGAAGCGCAACAAGACTAGAATCTCAGTTTCGACTAACCTACATAATGATCCTCCATCTTTTACGTGTTGAAGAATTAAAGGTGGAGGACATGCTGAAAAGAAGTTTTGCTGAATTTCATGCCCAGAAGAAACTACCCGAGAAACAACAGCTTCTCATGATAAAACGTTCTCTACCAACTAAACATATTGAATGTATTAAAGGTGAACCGGCAATTGAAGATTACTATGACATGTACATGGAAGCAAATGAATATAACAACAAGATGTCGGAAGCGGTCATGCAGTCTCCTTATGCCCAGAGTTTTCTTGTACAAGGAAGAGTAGTGGTCATGAAATCTGGAATGGGCATAGACAATTTACTCGGAATCGTTCTGAAGGGACCTTCCAACACTAACAGACAATATGTTGTTTTGGTGATAAAATCTGAAATACCGCCACCGGAGAAAAATATGGTCAGCATTGGCAAGAAAAGTTCAGATCCTTCTCAAGGTTATTTTATTGCGCCTAAATCAAAACGTGGTTTTGAAGAAGAATTTTATACAAAGCCGAGCTCTCGTAAAGGTCCCGTTGTAATAAAGATAGAGCTCCCGTACCATGGGGTTGCTGCTGGTGTAGGTTACGAGGTTAAAGGGTTTGATAACAAAGAATTTTTGTGCATATGCGATAGCAAGATAAAGATTGATCAGGTGCGCCTACTCGAGGATGGGAACAAGGCAGCTTTTTCTCAGACGGTTCAACAGCTTCTGGATCTGAAATCAGACGGAAACAAATTTCCTCCTGCTCTAGACCCAGTAAAAGATTTGAAGCTGAAAGATGCTGAGCTTGTGGAGACATACTATAAATGGACCAACCTATTGCAAAAGATGTCCATGAATAAGTGCCACGGTTGTGTCAAATTGGAAGAGCACATGAAGTTAGCTAGGGAGATTAAGAAGCATAAGACGGATCTCAAAGATCTTGAATTTCAAATGTCTGATGAAGCCCTATTACAAATGCCTGCCTTTCAGGGCCGGATCGATGTTCTGAAGAACATTGGGTGTATAGATGATGACCTCGTCGTCCAAATCAAAGGTCGTGTCGCTTGCGAGATGAATTCTGGGGAAGAATTGATTTGCACAGTGTGTCTGTTCGAGAATCAATTCGAAGAATTAGAACCAGAAGAAGCAGTGGCTATAATGTCTGCCTTTGTCTTCCAACAGAAAAACACTTCAGCGCCTACACTAACTCCTAAGCTGGCTAAGGCTAAACAAAGACTCTATGATACAGCAATCAGACTTGGTGAACTTCAAGCTCAGTACAATTTACAAATAGACCCTGAAGAATATGCTCAGGAGAATCTCAAATTTGGTCTGGTCGAAGTCGTCTATGAGTGGGCAAAGGGGACTCCATTTGCAGAGATATGTGAACTGACAGATGTCCCGGAAGGTCTGATAGTTCGAACCATTGTGAGATTGGATGAGACATGCCGTGAATTCAAGAACGCAGCTGCCATTATGGGGAACTCGGCGTTACACAAGAAAATGGATGCAGCTTCAAATGCCATAAAACGTGACATCGTCTTTGCGGCTAGTCTGTATGTGACCGGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

1347

Amino Acids

151.18

Weight (kDa)

5.79

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ski2_N	PF17911	142 - 215	8.5e-06	Ski2 N-terminal region
DEAD	PF00270	364 - 509	2.7e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	704 - 791	8.4e-06	Helicase conserved C-terminal domain
MTR4-like_stalk	PF21408	846 - 910	7.9e-11	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	912 - 1143	4.6e-25	Mtr4-like, beta-barrel domain
DSHCT	PF08148	1169 - 1339	5.9e-58	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46960 AT3G46960 AT3G46960
fragaria_vesca	FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880
malus_domestica	MD03G1077900.v1.1 MD11G1082500.v1.1
prunus_persica	Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1
pyrus_communis	pycom03g06210 pycom11g07060
rosa_chinensis	RchiOBHm_Chr5g0068091
rosa_laevigata	RLG00000035954
rosa_multiflora	Rmu_sc0000435.1_g000017
rosa_roxburghii	Rroxscaffold_1G00012520 Rroxscaffold_1G00013260
rosa_rugosa	Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500
rosa_samantha	Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400
rosa_wichuraiana	Rw5G041700 Rw5G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3509
AatII	GACGTC	1 cut(s)	900
AccB1I	GGYRCC	1 cut(s)	1516
AccBSI	CCGCTC	1 cut(s)	1217
AccII	CGCG	2 cut(s)	72, 2409
AciI	CCGC	7 cut(s)	70, 833, 1157, 1217, 2726, 2885, 4016
AclI	AACGTT	1 cut(s)	2617
AcoI	YGGCCR	4 cut(s)	90, 565, 1194, 1549
AcuI	CTGAAG	8 cut(s)	516, 693, 969, 1740, 2846, 3497, 3645, 3789
AcyI	GRCGYC	3 cut(s)	343, 897, 2001
AdeI	CACNNNGTG	1 cut(s)	3573
AfaI	GTAC	7 cut(s)	576, 1210, 2339, 2687, 2763, 3044, 3749
AfiI	CCNNNNNNNGG	8 cut(s)	208, 550, 669, 2010, 2939, 3047, 3151, 3948
AflIII	ACRYGT	3 cut(s)	1573, 2515, 2682
AgeI	ACCGGT	1 cut(s)	1032
AjiI	CACGTC	1 cut(s)	2357
AjnI	CCWGG	3 cut(s)	269, 505, 2329
AjuI	GAANNNNNNNTTGG	2 cut(s)	2115, 2147
AleI	CACNNNNGTG	2 cut(s)	1827, 3339
AloI	GAACNNNNNNTCC	2 cut(s)	2133, 2165
Alw21I	GWGCWC	4 cut(s)	30, 3005, 3039, 3360
Alw26I	GTCTC	9 cut(s)	93, 199, 562, 828, 884, 2231, 2742, 3275, 3905
AlwNI	CAGNNNCTG	2 cut(s)	962, 3196
Ama87I	CYCGRG	3 cut(s)	202, 2588, 3149
AoxI	GGCC	7 cut(s)	90, 565, 999, 1194, 1316, 1549, 3460
ApeKI	GCWGC	9 cut(s)	969, 1142, 1898, 2164, 3056, 3167, 3935, 3938, 3980
ArsI	GACNNNNNNTTYG	6 cut(s)	3508, 3513, 3540, 3545, 3995, 4027
AsiGI	ACCGGT	1 cut(s)	1032
Asp700I	GAANNNNTTC	2 cut(s)	1662, 3590
AspLEI	GCGC	4 cut(s)	2459, 2956, 3144, 3667
AspS9I	GGNCC	9 cut(s)	306, 455, 596, 999, 2013, 2831, 3014, 3297, 3460
AsuC2I	CCSGG	2 cut(s)	38, 3872
AsuHPI	GGTGA	7 cut(s)	56, 286, 1313, 2014, 2666, 2878, 3743
AsuII	TTCGAA	3 cut(s)	1077, 3594, 3889
AvaI	CYCGRG	3 cut(s)	202, 2588, 3149
AvaII	GGWCC	7 cut(s)	306, 455, 596, 2013, 2831, 3014, 3297
AxyI	CCTNAGG	1 cut(s)	2106
BaeGI	GKGCMC	1 cut(s)	2390
BalI	TGGCCA	2 cut(s)	567, 1196
BanI	GGYRCC	1 cut(s)	1516
BanII	GRGCYC	3 cut(s)	30, 3005, 3039
BarI	GAAGNNNNNNTAC	2 cut(s)	3423, 3455
BauI	CACGAG	2 cut(s)	1212, 1803
BbsI	GAAGAC	4 cut(s)	522, 1169, 1954, 3634
Bbv12I	GWGCWC	4 cut(s)	30, 3005, 3039, 3360
BbvI	GCAGC	9 cut(s)	981, 1154, 1910, 2151, 3043, 3179, 3925, 3947, 3992
BccI	CCATC	6 cut(s)	990, 1250, 1763, 2297, 2514, 3149
BceAI	ACGGC	3 cut(s)	105, 2190, 3903
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 1134, 1168
BciT130I	CCWGG	3 cut(s)	271, 507, 2331
BciVI	GTATCC	2 cut(s)	142, 349
BclI	TGATCA	3 cut(s)	802, 1335, 3133
BcnI	CCSGG	2 cut(s)	38, 3872
BcoDI	GTCTC	9 cut(s)	93, 199, 562, 828, 884, 2231, 2742, 3275, 3905
BfaI	CTAG	9 cut(s)	561, 618, 887, 1607, 2268, 2468, 3236, 3372, 4020
BfoI	RGCGCY	1 cut(s)	3668
BfuI	GTATCC	2 cut(s)	142, 349
BglI	GCCNNNNNGGC	1 cut(s)	340
BglII	AGATCT	3 cut(s)	637, 646, 3406
BlpI	GCTNAGC	1 cut(s)	3270
Bme1390I	CCNGG	5 cut(s)	38, 271, 507, 2331, 3872
Bme18I	GGWCC	7 cut(s)	306, 455, 596, 2013, 2831, 3014, 3297
BmeT110I	CYCGRG	3 cut(s)	202, 2588, 3149
BmgBI	CACGTC	1 cut(s)	2357
BmgT120I	GGNCC	9 cut(s)	306, 455, 596, 999, 2013, 2831, 3014, 3297, 3460
BmiI	GGNNCC	8 cut(s)	213, 318, 378, 597, 1518, 2014, 2832, 3016
BmrFI	CCNGG	5 cut(s)	38, 271, 507, 2331, 3872
BmrI	ACTGGG	3 cut(s)	972, 2019, 3236
BmsI	GCATC	8 cut(s)	270, 642, 838, 1334, 1675, 2275, 3256, 3967
BmuI	ACTGGG	3 cut(s)	972, 2019, 3236
BoxI	GACNNNNGTC	2 cut(s)	896, 3866
BpiI	GAAGAC	4 cut(s)	522, 1169, 1954, 3634
BplI	GAGNNNNNCTC	4 cut(s)	542, 574, 1765, 1797
BpmI	CTGGAG	3 cut(s)	1650, 2247, 2352
Bpu10I	CCTNAGC	3 cut(s)	3681, 3690, 3780
Bpu1102I	GCTNAGC	1 cut(s)	3270
Bpu14I	TTCGAA	3 cut(s)	1077, 3594, 3889
BpuEI	CTTGAG	3 cut(s)	812, 1810, 2922
BpuMI	CCSGG	2 cut(s)	38, 3872
Bsa29I	ATCGAT	1 cut(s)	3468
BsaAI	YACGTR	3 cut(s)	1391, 1574, 2516
BsaHI	GRCGYC	3 cut(s)	343, 897, 2001
BsaJI	CCNNGG	8 cut(s)	150, 270, 302, 1481, 2206, 2247, 3046, 3334
BsaWI	WCCGGW	5 cut(s)	50, 214, 1032, 2890, 4034
BsaXI	ACNNNNNCTCC	6 cut(s)	598, 628, 1116, 1146, 3661, 3691
Bsc4I	CCNNNNNNNGG	8 cut(s)	208, 550, 669, 2010, 2939, 3047, 3151, 3948
Bse118I	RCCGGY	2 cut(s)	1032, 2659
Bse1I	ACTGG	7 cut(s)	213, 967, 1585, 1598, 2014, 2025, 3242
Bse21I	CCTNAGG	1 cut(s)	2106
Bse3DI	GCAATG	4 cut(s)	28, 709, 874, 1023
BseBI	CCWGG	3 cut(s)	271, 507, 2331
BseCI	ATCGAT	1 cut(s)	3468
BseDI	CCNNGG	8 cut(s)	150, 270, 302, 1481, 2206, 2247, 3046, 3334
BseGI	GGATG	7 cut(s)	198, 916, 1001, 1690, 3160, 3913, 3982
BseLI	CCNNNNNNNGG	8 cut(s)	208, 550, 669, 2010, 2939, 3047, 3151, 3948
BseMI	GCAATG	4 cut(s)	28, 709, 874, 1023
BseNI	ACTGG	7 cut(s)	213, 967, 1585, 1598, 2014, 2025, 3242
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	2390
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	9 cut(s)	981, 1154, 1910, 2151, 3043, 3179, 3925, 3947, 3992
BseYI	CCCAGC	1 cut(s)	2159
Bsh1236I	CGCG	2 cut(s)	72, 2409
Bsh1285I	CGRYCG	2 cut(s)	93, 2277
BshFI	GGCC	7 cut(s)	92, 567, 1001, 1196, 1318, 1551, 3462
BshNI	GGYRCC	1 cut(s)	1516
BshTI	ACCGGT	1 cut(s)	1032
BshVI	ATCGAT	1 cut(s)	3468
BsiEI	CGRYCG	2 cut(s)	93, 2277
BsiHKAI	GWGCWC	4 cut(s)	30, 3005, 3039, 3360
BsiHKCI	CYCGRG	3 cut(s)	202, 2588, 3149
BsiSI	CCGG	9 cut(s)	37, 51, 215, 1033, 2660, 2891, 3463, 3872, 4035
BslFI	GGGAC	6 cut(s)	1927, 2026, 2844, 3000, 3847, 3854
BslI	CCNNNNNNNGG	8 cut(s)	208, 550, 669, 2010, 2939, 3047, 3151, 3948
BsmAI	GTCTC	9 cut(s)	93, 199, 562, 828, 884, 2231, 2742, 3275, 3905
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	6 cut(s)	1927, 2026, 2844, 3000, 3847, 3854
BsmI	GAATGC	1 cut(s)	1184
BsnI	GGCC	7 cut(s)	92, 567, 1001, 1196, 1318, 1551, 3462
BsoBI	CYCGRG	3 cut(s)	202, 2588, 3149
Bsp119I	TTCGAA	3 cut(s)	1077, 3594, 3889
Bsp1286I	GDGCHC	5 cut(s)	30, 2390, 3005, 3039, 3360
Bsp1407I	TGTACA	3 cut(s)	1208, 2685, 2761
Bsp1720I	GCTNAGC	1 cut(s)	3270
Bsp19I	CCATGG	2 cut(s)	2247, 3046
Bsp68I	TCGCGA	1 cut(s)	2409
BspACI	CCGC	7 cut(s)	70, 833, 1157, 1217, 2726, 2885, 4016
BspANI	GGCC	7 cut(s)	92, 567, 1001, 1196, 1318, 1551, 3462
BspDI	ATCGAT	1 cut(s)	3468
BspFNI	CGCG	2 cut(s)	72, 2409
BspHI	TCATGA	3 cut(s)	1338, 2607, 2781
BspLI	GGNNCC	8 cut(s)	213, 318, 378, 597, 1518, 2014, 2832, 3016
BspQI	GCTCTTC	1 cut(s)	3348
BspT104I	TTCGAA	3 cut(s)	1077, 3594, 3889
BspT107I	GGYRCC	1 cut(s)	1516
BsrBI	CCGCTC	1 cut(s)	1217
BsrDI	GCAATG	4 cut(s)	28, 709, 874, 1023
BsrFI	RCCGGY	2 cut(s)	1032, 2659
BsrGI	TGTACA	3 cut(s)	1208, 2685, 2761
BsrI	ACTGG	7 cut(s)	213, 967, 1585, 1598, 2014, 2025, 3242
BssAI	RCCGGY	2 cut(s)	1032, 2659
BssECI	CCNNGG	8 cut(s)	150, 270, 302, 1481, 2206, 2247, 3046, 3334
BssNI	GRCGYC	3 cut(s)	343, 897, 2001
BssSI	CACGAG	2 cut(s)	1212, 1803
BssT1I	CCWWGG	5 cut(s)	150, 302, 1481, 2247, 3046
Bst2BI	CACGAG	2 cut(s)	1212, 1803
Bst2UI	CCWGG	3 cut(s)	271, 507, 2331
Bst6I	CTCTTC	4 cut(s)	945, 2362, 2764, 3348
BstACI	GRCGYC	3 cut(s)	343, 897, 2001
BstAPI	GCANNNNNTGC	2 cut(s)	1181, 2357
BstAUI	TGTACA	3 cut(s)	1208, 2685, 2761
BstBAI	YACGTR	3 cut(s)	1391, 1574, 2516
BstBI	TTCGAA	3 cut(s)	1077, 3594, 3889
BstC8I	GCNNGC	7 cut(s)	19, 859, 1811, 2362, 3450, 3535, 3687
BstDSI	CCRYGG	4 cut(s)	2206, 2247, 3046, 3334
BstEII	GGTNACC	1 cut(s)	62
BstENI	CCTNNNNNAGG	3 cut(s)	548, 2937, 3149
BstF5I	GGATG	7 cut(s)	198, 916, 1001, 1690, 3160, 3913, 3982
BstFNI	CGCG	2 cut(s)	72, 2409
BstH2I	RGCGCY	1 cut(s)	3668
BstHHI	GCGC	4 cut(s)	2459, 2956, 3144, 3667
BstMAI	GTCTC	9 cut(s)	93, 199, 562, 828, 884, 2231, 2742, 3275, 3905
BstMCI	CGRYCG	2 cut(s)	93, 2277
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 340, 935, 1181, 2357, 3989
BstNI	CCWGG	3 cut(s)	271, 507, 2331
BstNSI	RCATGY	3 cut(s)	2545, 2686, 3918
BstPAI	GACNNNNGTC	2 cut(s)	896, 3866
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	5 cut(s)	36, 269, 505, 2329, 3870
BstSLI	GKGCMC	1 cut(s)	2390
BstUI	CGCG	2 cut(s)	72, 2409
BstV1I	GCAGC	9 cut(s)	981, 1154, 1910, 2151, 3043, 3179, 3925, 3947, 3992
BstV2I	GAAGAC	4 cut(s)	522, 1169, 1954, 3634
BstX2I	RGATCY	8 cut(s)	637, 646, 815, 1751, 2929, 3199, 3397, 3406
BstYI	RGATCY	8 cut(s)	637, 646, 815, 1751, 2929, 3199, 3397, 3406
BstZI	CGGCCG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	3468
Bsu36I	CCTNAGG	1 cut(s)	2106
BsuI	GTATCC	2 cut(s)	142, 349
BsuRI	GGCC	7 cut(s)	92, 567, 1001, 1196, 1318, 1551, 3462
BsuTUI	ATCGAT	1 cut(s)	3468
BtgI	CCRYGG	4 cut(s)	2206, 2247, 3046, 3334
BtgZI	GCGATG	1 cut(s)	2424
BtrI	CACGTC	1 cut(s)	2357
BtsCI	GGATG	7 cut(s)	198, 916, 1001, 1690, 3160, 3913, 3982
BtsI	GCAGTG	1 cut(s)	3624
BtsIMutI	CAGTG	8 cut(s)	107, 254, 393, 900, 1204, 1864, 3576, 3624
BtuMI	TCGCGA	1 cut(s)	2409
Cac8I	GCNNGC	7 cut(s)	19, 859, 1811, 2362, 3450, 3535, 3687
CaiI	CAGNNNCTG	2 cut(s)	962, 3196
CciI	TCATGA	3 cut(s)	1338, 2607, 2781
CfoI	GCGC	4 cut(s)	2459, 2956, 3144, 3667
Cfr10I	RCCGGY	2 cut(s)	1032, 2659
Cfr13I	GGNCC	9 cut(s)	306, 455, 596, 999, 2013, 2831, 3014, 3297, 3460
ClaI	ATCGAT	1 cut(s)	3468
CseI	GACGC	4 cut(s)	61, 113, 332, 2009
Csp6I	GTAC	7 cut(s)	575, 1209, 2338, 2686, 2762, 3043, 3748
CspAI	ACCGGT	1 cut(s)	1032
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviQI	GTAC	7 cut(s)	575, 1209, 2338, 2686, 2762, 3043, 3748
DraIII	CACNNNGTG	1 cut(s)	3573
DrdI	GACNNNNNNGTC	1 cut(s)	3509
DseDI	GACNNNNNNGTC	1 cut(s)	3509
EaeI	YGGCCR	4 cut(s)	90, 565, 1194, 1549
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	4 cut(s)	945, 2362, 2764, 3348
EarI	CTCTTC	4 cut(s)	945, 2362, 2764, 3348
EciI	GGCGGA	1 cut(s)	848
Ecl136II	GAGCTC	3 cut(s)	28, 3003, 3037
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	5 cut(s)	150, 302, 1481, 2247, 3046
Eco24I	GRGCYC	3 cut(s)	30, 3005, 3039
Eco32I	GATATC	1 cut(s)	1384
Eco47I	GGWCC	7 cut(s)	306, 455, 596, 2013, 2831, 3014, 3297
Eco52I	CGGCCG	1 cut(s)	90
Eco53kI	GAGCTC	3 cut(s)	28, 3003, 3037
Eco57I	CTGAAG	8 cut(s)	516, 693, 969, 1740, 2846, 3497, 3645, 3789
Eco81I	CCTNAGG	1 cut(s)	2106
Eco88I	CYCGRG	3 cut(s)	202, 2588, 3149
Eco91I	GGTNACC	1 cut(s)	62
EcoICRI	GAGCTC	3 cut(s)	28, 3003, 3037
EcoNI	CCTNNNNNAGG	3 cut(s)	548, 2937, 3149
EcoO109I	RGGNCCY	4 cut(s)	455, 596, 2831, 3014
EcoO65I	GGTNACC	1 cut(s)	62
EcoRI	GAATTC	4 cut(s)	1067, 1711, 3544, 3923
EcoRII	CCWGG	3 cut(s)	269, 505, 2329
EcoRV	GATATC	1 cut(s)	1384
EcoT14I	CCWWGG	5 cut(s)	150, 302, 1481, 2247, 3046
EcoT22I	ATGCAT	1 cut(s)	1186
EcoT38I	GRGCYC	3 cut(s)	30, 3005, 3039
ErhI	CCWWGG	5 cut(s)	150, 302, 1481, 2247, 3046
Esp3I	CGTCTC	1 cut(s)	93
FalI	AAGNNNNNCTT	2 cut(s)	1650, 1682
FaqI	GGGAC	6 cut(s)	1927, 2026, 2844, 3000, 3847, 3854
FauI	CCCGC	1 cut(s)	1150
FauNDI	CATATG	1 cut(s)	3110
FbaI	TGATCA	3 cut(s)	802, 1335, 3133
FokI	GGATG	7 cut(s)	185, 923, 1008, 1697, 3167, 3920, 3989
FriOI	GRGCYC	3 cut(s)	30, 3005, 3039
FspBI	CTAG	9 cut(s)	561, 618, 887, 1607, 2268, 2468, 3236, 3372, 4020
GlaI	GCGC	4 cut(s)	2458, 2955, 3143, 3666
GsaI	CCCAGC	1 cut(s)	2163
GsuI	CTGGAG	3 cut(s)	1650, 2247, 2352
HaeII	RGCGCY	1 cut(s)	3668
HaeIII	GGCC	7 cut(s)	92, 567, 1001, 1196, 1318, 1551, 3462
HapII	CCGG	9 cut(s)	37, 51, 215, 1033, 2660, 2891, 3463, 3872, 4035
HgaI	GACGC	4 cut(s)	61, 113, 332, 2009
HhaI	GCGC	4 cut(s)	2459, 2956, 3144, 3667
Hin1I	GRCGYC	3 cut(s)	343, 897, 2001
Hin6I	GCGC	4 cut(s)	2457, 2954, 3142, 3665
HinP1I	GCGC	4 cut(s)	2457, 2954, 3142, 3665
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	2 cut(s)	1928, 2125
HpaII	CCGG	9 cut(s)	37, 51, 215, 1033, 2660, 2891, 3463, 3872, 4035
HphI	GGTGA	7 cut(s)	56, 286, 1313, 2014, 2666, 2878, 3743
Hpy166II	GTNNAC	8 cut(s)	487, 695, 1211, 1423, 2340, 2657, 3734, 3857
Hpy8I	GTNNAC	8 cut(s)	487, 695, 1211, 1423, 2340, 2657, 3734, 3857
Hpy99I	CGWCG	4 cut(s)	77, 107, 2003, 3512
HpyAV	CCTTC	9 cut(s)	296, 457, 554, 754, 1090, 2821, 2844, 2943, 3869
HpyCH4IV	ACGT	9 cut(s)	897, 1390, 1437, 1573, 2356, 2515, 2617, 2968, 4000
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 340, 935, 1181, 2357, 3989
HpySE526I	ACGT	9 cut(s)	897, 1390, 1437, 1573, 2356, 2515, 2617, 2968, 4000
Hsp92I	GRCGYC	3 cut(s)	343, 897, 2001
HspAI	GCGC	4 cut(s)	2457, 2954, 3142, 3665
Ksp22I	TGATCA	3 cut(s)	802, 1335, 3133
LguI	GCTCTTC	1 cut(s)	3348
LmnI	GCTCC	8 cut(s)	368, 376, 672, 966, 1234, 1773, 2266, 3042
Lsp1109I	GCAGC	9 cut(s)	981, 1154, 1910, 2151, 3043, 3179, 3925, 3947, 3992
LweI	GCATC	8 cut(s)	270, 642, 838, 1334, 1675, 2275, 3256, 3967
MaeI	CTAG	9 cut(s)	561, 618, 887, 1607, 2268, 2468, 3236, 3372, 4020
MaeII	ACGT	9 cut(s)	897, 1390, 1437, 1573, 2356, 2515, 2617, 2968, 4000
MbiI	CCGCTC	1 cut(s)	1217
MfeI	CAATTG	3 cut(s)	2172, 2321, 2664
MflI	RGATCY	8 cut(s)	637, 646, 815, 1751, 2929, 3199, 3397, 3406
MhlI	GDGCHC	5 cut(s)	30, 2390, 3005, 3039, 3360
MlsI	TGGCCA	2 cut(s)	567, 1196
MluNI	TGGCCA	2 cut(s)	567, 1196
MlyI	GAGTC	6 cut(s)	549, 830, 1136, 2112, 3699, 3829
MmeI	TCCRAC	6 cut(s)	22, 344, 2431, 2700, 2862, 3670
Mox20I	TGGCCA	2 cut(s)	567, 1196
Mph1103I	ATGCAT	1 cut(s)	1186
MroXI	GAANNNNTTC	2 cut(s)	1662, 3590
MscI	TGGCCA	2 cut(s)	567, 1196
MseI	TTAA	9 cut(s)	624, 1236, 1355, 2217, 2256, 2528, 2649, 3078, 3381
MslI	CAYNNNNRTG	8 cut(s)	702, 1472, 1767, 1803, 1827, 2345, 2687, 3339
Msp20I	TGGCCA	2 cut(s)	567, 1196
MspA1I	CMGCKG	2 cut(s)	812, 3938
MspI	CCGG	9 cut(s)	37, 51, 215, 1033, 2660, 2891, 3463, 3872, 4035
MspR9I	CCNGG	5 cut(s)	38, 271, 507, 2331, 3872
MunI	CAATTG	3 cut(s)	2172, 2321, 2664
Mva1269I	GAATGC	1 cut(s)	1184
MvaI	CCWGG	3 cut(s)	271, 507, 2331
MvnI	CGCG	2 cut(s)	72, 2409
MwoI	GCNNNNNNNGC	6 cut(s)	236, 340, 935, 1181, 2357, 3989
NciI	CCSGG	2 cut(s)	38, 3872
NcoI	CCATGG	2 cut(s)	2247, 3046
NdeI	CATATG	1 cut(s)	3110
NlaIV	GGNNCC	8 cut(s)	213, 318, 378, 597, 1518, 2014, 2832, 3016
NmeAIII	GCCGAG	4 cut(s)	9, 118, 3024, 3935
NmuCI	GTSAC	4 cut(s)	62, 898, 4001, 4030
NruI	TCGCGA	1 cut(s)	2409
NsiI	ATGCAT	1 cut(s)	1186
NspI	RCATGY	3 cut(s)	2545, 2686, 3918
NspV	TTCGAA	3 cut(s)	1077, 3594, 3889
OliI	CACNNNNGTG	2 cut(s)	1827, 3339
PaeR7I	CTCGAG	1 cut(s)	3149
PagI	TCATGA	3 cut(s)	1338, 2607, 2781
PciI	ACATGT	1 cut(s)	2682
PciSI	GCTCTTC	1 cut(s)	3348
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PctI	GAATGC	1 cut(s)	1184
PdmI	GAANNNNTTC	2 cut(s)	1662, 3590
PflFI	GACNNNGTC	2 cut(s)	3506, 4007
PfoI	TCCNGGA	2 cut(s)	2329, 3870
PinAI	ACCGGT	1 cut(s)	1032
PleI	GAGTC	6 cut(s)	548, 829, 1135, 2112, 3699, 3829
PpsI	GAGTC	6 cut(s)	548, 829, 1135, 2112, 3699, 3829
Ppu21I	YACGTR	3 cut(s)	1391, 1574, 2516
PpuMI	RGGWCCY	4 cut(s)	455, 596, 2831, 3014
PscI	ACATGT	1 cut(s)	2682
PshAI	GACNNNNGTC	2 cut(s)	896, 3866
Psp124BI	GAGCTC	3 cut(s)	30, 3005, 3039
Psp1406I	AACGTT	1 cut(s)	2617
Psp5II	RGGWCCY	4 cut(s)	455, 596, 2831, 3014
Psp6I	CCWGG	3 cut(s)	269, 505, 2329
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	2159
PspGI	CCWGG	3 cut(s)	269, 505, 2329
PspN4I	GGNNCC	8 cut(s)	213, 318, 378, 597, 1518, 2014, 2832, 3016
PspPI	GGNCC	9 cut(s)	306, 455, 596, 999, 2013, 2831, 3014, 3297, 3460
PspPPI	RGGWCCY	4 cut(s)	455, 596, 2831, 3014
PspXI	VCTCGAGB	1 cut(s)	3149
PstNI	CAGNNNCTG	2 cut(s)	962, 3196
PsuI	RGATCY	8 cut(s)	637, 646, 815, 1751, 2929, 3199, 3397, 3406
PsyI	GACNNNGTC	2 cut(s)	3506, 4007
PvuII	CAGCTG	2 cut(s)	812, 3938
RruI	TCGCGA	1 cut(s)	2409
RsaI	GTAC	7 cut(s)	576, 1210, 2339, 2687, 2763, 3044, 3749
RsaNI	GTAC	7 cut(s)	575, 1209, 2338, 2686, 2762, 3043, 3748
RseI	CAYNNNNRTG	8 cut(s)	702, 1472, 1767, 1803, 1827, 2345, 2687, 3339
SacI	GAGCTC	3 cut(s)	30, 3005, 3039
SapI	GCTCTTC	1 cut(s)	3348
SaqAI	TTAA	9 cut(s)	624, 1236, 1355, 2217, 2256, 2528, 2649, 3078, 3381
Sau96I	GGNCC	9 cut(s)	306, 455, 596, 999, 2013, 2831, 3014, 3297, 3460
SchI	GAGTC	6 cut(s)	549, 830, 1136, 2112, 3699, 3829
ScrFI	CCNGG	5 cut(s)	38, 271, 507, 2331, 3872
SduI	GDGCHC	5 cut(s)	30, 2390, 3005, 3039, 3360
SfaNI	GCATC	8 cut(s)	270, 642, 838, 1334, 1675, 2275, 3256, 3967
Sfr274I	CTCGAG	1 cut(s)	3149
SfuI	TTCGAA	3 cut(s)	1077, 3594, 3889
SinI	GGWCC	7 cut(s)	306, 455, 596, 2013, 2831, 3014, 3297
SlaI	CTCGAG	1 cut(s)	3149
SmiMI	CAYNNNNRTG	8 cut(s)	702, 1472, 1767, 1803, 1827, 2345, 2687, 3339
SmlI	CTYRAG	4 cut(s)	791, 1825, 2937, 3149
SmoI	CTYRAG	4 cut(s)	791, 1825, 2937, 3149
SsiI	CCGC	7 cut(s)	70, 833, 1157, 1217, 2726, 2885, 4016
SspI	AATATT	1 cut(s)	1353
SspMI	CTAG	9 cut(s)	561, 618, 887, 1607, 2268, 2468, 3236, 3372, 4020
SstI	GAGCTC	3 cut(s)	30, 3005, 3039
StyD4I	CCNGG	5 cut(s)	36, 269, 505, 2329, 3870
StyI	CCWWGG	5 cut(s)	150, 302, 1481, 2247, 3046
TaiI	ACGT	9 cut(s)	900, 1393, 1440, 1576, 2359, 2518, 2620, 2971, 4003
TaqII	GACCGA	1 cut(s)	2030
TatI	WGTACW	5 cut(s)	1208, 2337, 2685, 2761, 3747
TauI	GCSGC	1 cut(s)	4019
Tru1I	TTAA	9 cut(s)	624, 1236, 1355, 2217, 2256, 2528, 2649, 3078, 3381
Tru9I	TTAA	9 cut(s)	624, 1236, 1355, 2217, 2256, 2528, 2649, 3078, 3381
TscAI	CASTG	8 cut(s)	114, 254, 393, 907, 1211, 1864, 3576, 3624
TseFI	GTSAC	4 cut(s)	62, 898, 4001, 4030
TseI	GCWGC	9 cut(s)	969, 1142, 1898, 2164, 3056, 3167, 3935, 3938, 3980
Tsp45I	GTSAC	4 cut(s)	62, 898, 4001, 4030
TspGWI	ACGGA	8 cut(s)	298, 381, 491, 1000, 2039, 2249, 3228, 3410
TspRI	CASTG	8 cut(s)	114, 254, 393, 907, 1211, 1864, 3576, 3624
Tth111I	GACNNNGTC	2 cut(s)	3506, 4007
VpaK11BI	GGWCC	7 cut(s)	306, 455, 596, 2013, 2831, 3014, 3297
XagI	CCTNNNNNAGG	3 cut(s)	548, 2937, 3149
XbaI	TCTAGA	1 cut(s)	3235
XceI	RCATGY	3 cut(s)	2545, 2686, 3918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3901
XhoI	CTCGAG	1 cut(s)	3149
XmnI	GAANNNNTTC	2 cut(s)	1662, 3590
XspI	CTAG	9 cut(s)	561, 618, 887, 1607, 2268, 2468, 3236, 3372, 4020
ZraI	GACGTC	1 cut(s)	898
Zsp2I	ATGCAT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.