Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005110

Physical Location & Seq

Genomic Coordinates Reverse (-)

32424298 .. 32441058

Gene Structure 16761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37880.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4056 bp

ATGGATCCGATAGAAGCCGCGAAGGAGCTCTCATTCCGGGTCGGGTTCTCCGGCCACAGCGGCCACCTCAGGCTCGAGCCTCTCTTCACCGCCGAGCGCTCCGACCCCGTCAAGTCGCTCCCCGATTTCGTTCTGCCTCCTGCATTTGTTAGGGAGACGCCGGAGTCGATAAAAGAGTATATAGAGGAGACATATTTGTTGCCGAGATTGGATTCTGATGTATTTGCACCGGAAAAGGCTGGGAGGCAGTGGGATTTCGACTGGTTTGACAAGGCAAATGTGCCGTTGGAGCCATCGTTGCCGCGGTCTGTTGTTGTTCCTACATGGGAGTTACCGTTTAGGTGCCAGAAGAATGGATCAGAAGGAGGGATATGGGAACCTAAATCTGTGCAGGTTGATGAAACAGAACGTACTGTAGAAGCACAAGAGTCTGGTTCGTTGCCACGCATGGCCGGACCAGCAAAGGATTTTGTACGGGGAAGCATCAGCAACCGCCCTTTTCGTCCAGGAGGCTTGGATGATTCCCAATCTCTAGAAAGAACTCTTCCCGAAGGTGCTTCTAATGGCGAATGGGTACGCCAACTTCTGACTGGTGGCCCTGCGCAGGCTGTTCCACCAAGTTTTAAGCAAGGATTGGACCTTGGTCCTCTCAAGGCATATCCAGTCTCATGGAATGTATACAATGATCAAAGATCAGTCAAGAGCACATCAGATGAAAAGCTGGGTATGCAGAGTGAGTTGTCTGTACAGTTTGATGACTTGTTCAAAAAGGCTTGGGATGAGGATGTTGTTGAATTAGAAGGAGACGGTCAATTGTCAGGATCAGAATCTGTTGAGTCAGAGTATGAAGTAAATGTGGTTGATGTTGATATTACCAGCAATCCTTCTGAGCCTGAACTGTCTGTTTTGGATGAGATCTTGTCTGTTGAGGCAGGAGACTCAAAGTCAAGATTCAATGGAACTGGTGGTGAACAGAACCCGGAGGCCTGGGCTATTAGTGGACGTACTGAATGGATTTCAGAGAATTTTAATGATCTTGTTCCTGATATGGCACTTGATTTTCCTTTCGAATTGGATACATTCCAAAAGGAGGGGGAGTCTGTATTTGTAGCTGCTCACACATCAGCTGGAAAGACAGTTGTTGCAGAATATGCATTTGCTTTGGCATCAAAACATTGCACTAGAGCTGTGTATACAGCTCCTATCAAAACCATCAGCAACCAAAAATATAGGGACTTCTGTGGAAAATTCGATGTTGGACTTCTCACTGGTGATGTTAGCTTGAGGCCCGAGGCTTCTTGTCTCATTATGACCACTGAAATACTAAGATCAATGCTTTATAGGGGTGCTGACATCATACGTGATATTGAATGGGTTATCTTTGATGAGGTTCATTATGTCAATGATGTCGAAAGAGGTGTTGTCTGGGAAGAAGTTATTATAATGCTCCCAAGACACATCAACATTGTCCTCCTTTCAGCTACGGTGCCAAACAAAGTTGAGTTTGCTGACTGGATTGGACGGACAAAGCAAAAGCAAATCCGTGTTACTGGGACTACAAAAAGACCAGTCCCATTGGAGCACTGCCTATTTTACTCTGGAGAACTTTACAAGATATGTGAAAGTGAAACCTTCATTCCTCAGGGCTTCAAAGCGGCAAAAGATACATTCAAGAAAAAGACTATGAGTCCTGCCACCAGCGGTGGTGGTGGTGGATCACGTGCTCCAGCTTCTGCGTCAGCTTCTCATGATGGGGCTCGAGGTCCAAAACGTGAAACCTCACATATGGAAAAACAGAAGCAATCAGGTGCCCATAATTCAGGGAATTTATCCAGAACTGGTGGAGCAAATCAAAACAACGGCAATGGCATGAACAATTGGGGTTTAAGAAGATCAGATGCTTCTTCGTGGTTGTCACTTATTAACAAGCTGTCAAAGAAGTCACTATTACCTGTGGTTATATTTTGTTTCTCAAAGAATCGCTGTGATAGGTCAGCTGATAGCATGTTGGGAATTGACCTCACAAGTAGTTCTGAGAAAAGTCAGATTCGTGTTTTCTGTGACAAAGCATTTTCACGGCTGAAGGGATCTGACAGGAATTTACCTCAGGTTGTCAGAGTTCAAAATCTTCTCCATAGAGGGATTGGTGTCCATCATGCAGGACTTCTTCCAATTGTTAAGGAAGTTGTTGAAATGCTCTTTTGTCGTGGTGTGATAAAGGTTCTATTTTCGACAGAGACATTTGCAATGGGAGTTAATGCACCAGCGAGAACGGTTGTTTTTGATACATTAAGGAAATTTGATGGCAAGGAATTCAGACAACTACTACCAGGAGAATACACTCAAATGGCAGGCCGTGCTGGCAGGAGAGGACTTGATAAAATTGGTACAGTGATTGTAATGTGCCGTGATGAAATCCTAGAAGAGAGGGATTTGACGCATGTCATAGTTGGAAGTGCAACCAGGCTAGAATCTCAGTTTCGGCTTACTTATATTATGATCATGCATCTTCTTCGTGTTGAAGAACTAAAGGTGGAGGACATGCTGAAAAGAAGTTTCGCTGAGTTCCATGCTCAGAAGAAACTACCTGATATGCAGCAACTTCTGATGCGAAAACTTGCTCAGCCTACAAAAAGTATCGAATGTATCAAAGGGGAACCAGCTATTGAGGAGTATTATGACATGTACTCAGAAGCGCAGAAGCATAGCACAGAAATATTGGAGGCAGTAATGCAGTCCTCTGTTGCCCAACAATTTCTTACTCCTGGAAGAGTGGTCGTCATGAAATCACAATCAGCCCAGGATCACTTGCTTGGAGTTGTTGTGAAAGCACCTTCTTCTAGTAATAAGCAGCACATTGTTTTAGTGCTGAAACCTGAACTACCAGCGACAATCCAAACTCCCCTGGCTAGTGGTAGCTTACAAGATACCAAAAACACTGATTCTTCTCAGGGTTTCTACATGGTAGCTAAATCTAAACGTGCTCTTGAAGAAGAGTATTGTACCTCTGTTTCTTCTCGCAAAGGATCAGGTGCCATCAACATAAAATTACCACACCAGGGTGCAGCTGCTGGGGTGAGATACGAGGTTAGAGGAGCCGATAACACAGACTTCTTATACATATGCGCATGCAAAATAAAGATTGACCAAGTTCGGCTTCTTGAGGACAGTAGTAGTGCTGCTTACTCCAAGACGGTGCAACAGCTGTTGGAAAAAAAATCTGAGGGAAATAAGTACCCTCCAGCATTGGATCCATTGAAAGATCTGAAGTTGAAAGACATGCATCTTGTGGAAACATACTACAAGTGGACTAACTTATTGCAGAAGATGGCAAAGAATAAGTGCCATGGATGTATTAAATTGGAGGAACACATCAAGTTAGCAAGAGAGATAAAAAGACACAGCGAGGAAGTTAATGCTCTTAAGTATCAAATGTCAGACGAATCACTTCAACAGATGCCCGATTTTCAAGGCCGGATAGATGTTCTGAAGGAAATCGGATGTATAGATGCTGACCTTGTTGTTCAAATAAAAGGCCGTGTCGCATGCGAAATGAATTCTGGGGAGGAGTTGATATGCACGGAGTGTTTGTTTGAGAACCAACTAGATGACCTGGAACCAGAAGAAGCGGTGGCATTAATGTCATCTTTTGTTTTTCAGCAGAAGAATACTTCTGAACCTTCGCTTACTCCTAAACTTTCTATGGCGAAAGAGAGACTGTACGACACAGCAATAAGACTAGGCGAGCTTCAAGCTTACTTCAAACTTCCAATAAATCCGGAGGAGTACGCCAGAGAGAATCTCAAGTTTGGTCTTGTTGAAGTCGTTTATGAGTGGGCAAAGGGCACACCATTTGCAGATATTTGTGAACTTACCGATGTTCCTGAAGGCATGATAGTTCGCACCATTGTTAGACTTGATGAGACATGTCGTGAATTTAAAAATGCTGCATCTATTATGGGTAATTCTGCTCTATACAAGAAGATGGAGACAGCTTCAAATGCAATAAAACGTGACATTGTTTTTGCAGCTAGCTTGTATGTCACAGGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

1352

Amino Acids

150.72

Weight (kDa)

5.71

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ski2_N	PF17911	113 - 215	1.6e-10	Ski2 N-terminal region
DEAD	PF00270	358 - 505	6e-23	DEAD/DEAH box helicase
Helicase_C	PF00271	681 - 795	5.3e-06	Helicase conserved C-terminal domain
MTR4-like_stalk	PF21408	850 - 914	1.5e-12	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	917 - 1151	1.4e-27	Mtr4-like, beta-barrel domain
DSHCT	PF08148	1177 - 1347	2.4e-58	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46960 AT3G46960 AT3G46960
fragaria_vesca	FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880
malus_domestica	MD03G1077900.v1.1 MD11G1082500.v1.1
prunus_persica	Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1
pyrus_communis	pycom03g06210 pycom11g07060
rosa_chinensis	RchiOBHm_Chr5g0068091
rosa_laevigata	RLG00000035954
rosa_multiflora	Rmu_sc0000435.1_g000017
rosa_roxburghii	Rroxscaffold_1G00012520 Rroxscaffold_1G00013260
rosa_rugosa	Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500
rosa_samantha	Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400
rosa_wichuraiana	Rw5G041700 Rw5G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1442
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc16I	TGCGCA	2 cut(s)	603, 3127
Acc36I	ACCTGC	1 cut(s)	382
AccB1I	GGYRCC	4 cut(s)	342, 1486, 1808, 3032
AccI	GTMKAC	2 cut(s)	678, 1193
AccII	CGCG	2 cut(s)	20, 304
AccIII	TCCGGA	1 cut(s)	3778
AciI	CCGC	9 cut(s)	18, 60, 90, 302, 304, 493, 1655, 1701, 3629
AclWI	GGATC	9 cut(s)	12, 364, 829, 1723, 2095, 2811, 3034, 3245, 3258
AcoI	YGGCCR	3 cut(s)	52, 61, 450
AcsI	RAATTY	8 cut(s)	1024, 1247, 1825, 2098, 2297, 2312, 3556, 3935
AcuI	CTGAAG	4 cut(s)	2102, 3287, 3509, 3906
AcvI	CACGTG	1 cut(s)	1721
AcyI	GRCGYC	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	3585
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	604, 1090, 3059
AflII	CTTAAG	1 cut(s)	3422
AflIII	ACRYGT	2 cut(s)	2682, 3926
AhdI	GACNNNNNGTC	2 cut(s)	943, 1686
AjnI	CCWGG	9 cut(s)	505, 986, 2329, 2462, 2764, 2799, 2904, 3057, 3612
AjuI	GAANNNNNNNTTGG	2 cut(s)	3141, 3173
AleI	CACNNNNGTG	1 cut(s)	3060
Alw21I	GWGCWC	5 cut(s)	30, 707, 1584, 1726, 2986
AlwI	GGATC	9 cut(s)	12, 364, 829, 1723, 2095, 2811, 3034, 3245, 3258
AlwNI	CAGNNNCTG	3 cut(s)	830, 1733, 3071
Ama87I	CYCGRG	3 cut(s)	74, 1289, 1758
Aor13HI	TCCGGA	1 cut(s)	3778
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	9 cut(s)	52, 61, 450, 595, 984, 1286, 2353, 3472, 3535
ApeKI	GCWGC	8 cut(s)	1112, 2596, 2851, 3065, 3068, 3179, 3947, 4028
ApoI	RAATTY	8 cut(s)	1024, 1247, 1825, 2098, 2297, 2312, 3556, 3935
ArsI	GACNNNNNNTTYG	2 cut(s)	4007, 4039
AseI	ATTAAT	1 cut(s)	3638
Asp700I	GAANNNNTTC	1 cut(s)	3447
AspLEI	GCGC	4 cut(s)	99, 604, 2698, 3128
AspS9I	GGNCC	6 cut(s)	455, 596, 637, 644, 1287, 1763
AsuC2I	CCSGG	2 cut(s)	38, 980
AsuHPI	GGTGA	4 cut(s)	79, 980, 1283, 3088
AsuII	TTCGAA	1 cut(s)	1068
AsuNHI	GCTAGC	1 cut(s)	4031
AvaI	CYCGRG	3 cut(s)	74, 1289, 1758
AvaII	GGWCC	4 cut(s)	455, 637, 644, 1763
AxyI	CCTNAGG	3 cut(s)	68, 1641, 2106
BaeGI	GKGCMC	2 cut(s)	1813, 3848
BamHI	GGATCC	2 cut(s)	4, 3250
BanI	GGYRCC	4 cut(s)	342, 1486, 1808, 3032
BanII	GRGCYC	2 cut(s)	30, 1759
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbrPI	CACGTG	1 cut(s)	1721
Bbv12I	GWGCWC	5 cut(s)	30, 707, 1584, 1726, 2986
BbvI	GCAGC	8 cut(s)	1099, 2608, 2863, 3055, 3077, 3166, 3934, 4040
BccI	CCATC	8 cut(s)	301, 1220, 1745, 2160, 2297, 3044, 3322, 3979
BceAI	ACGGC	6 cut(s)	268, 1876, 2093, 2340, 2391, 3522
BcgI	CGANNNNNNTGC	2 cut(s)	2495, 2529
BciT130I	CCWGG	9 cut(s)	507, 988, 2331, 2464, 2766, 2801, 2906, 3059, 3614
BciVI	GTATCC	1 cut(s)	1069
BclI	TGATCA	2 cut(s)	685, 2499
BcnI	CCSGG	2 cut(s)	38, 980
BfaI	CTAG	9 cut(s)	533, 1182, 2420, 2468, 2841, 2910, 3605, 3740, 4032
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	100
BfrI	CTTAAG	1 cut(s)	3422
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	1069
BglI	GCCNNNNNGGC	2 cut(s)	60, 2361
BglII	AGATCT	2 cut(s)	915, 3262
BlpI	GCTNAGC	1 cut(s)	2622
Bme18I	GGWCC	4 cut(s)	455, 637, 644, 1763
BmeRI	GACNNNNNGTC	2 cut(s)	943, 1686
BmeT110I	CYCGRG	3 cut(s)	74, 1289, 1758
BmgT120I	GGNCC	6 cut(s)	455, 596, 637, 644, 1287, 1763
BmrI	ACTGGG	1 cut(s)	1560
BmsI	GCATC	9 cut(s)	492, 1175, 1888, 2515, 2598, 3292, 3447, 3499, 3959
BmtI	GCTAGC	1 cut(s)	4035
BmuI	ACTGGG	1 cut(s)	1560
BoxI	GACNNNNGTC	2 cut(s)	642, 2441
BplI	GAGNNNNNCTC	2 cut(s)	3786, 3818
BpmI	CTGGAG	3 cut(s)	1620, 1710, 3225
Bpu1102I	GCTNAGC	1 cut(s)	2622
Bpu14I	TTCGAA	1 cut(s)	1068
BpuEI	CTTGAG	4 cut(s)	635, 1303, 3182, 3788
BpuMI	CCSGG	2 cut(s)	38, 980
BsaAI	YACGTR	2 cut(s)	1361, 1721
BsaBI	GATNNNNATC	1 cut(s)	826
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	8 cut(s)	302, 640, 987, 1290, 2799, 2904, 3058, 3346
BsaWI	WCCGGW	2 cut(s)	229, 3778
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 1090, 3059
Bse1I	ACTGG	9 cut(s)	266, 595, 662, 967, 1273, 1517, 1555, 1568, 1843
Bse21I	CCTNAGG	3 cut(s)	68, 1641, 2106
Bse3DI	GCAATG	3 cut(s)	1174, 1870, 2253
Bse8I	GATNNNNATC	1 cut(s)	826
BseAI	TCCGGA	1 cut(s)	3778
BseBI	CCWGG	9 cut(s)	507, 988, 2331, 2464, 2766, 2801, 2906, 3059, 3614
BseDI	CCNNGG	8 cut(s)	302, 640, 987, 1290, 2799, 2904, 3058, 3346
BseGI	GGATG	6 cut(s)	523, 784, 790, 916, 3356, 3506
BseJI	GATNNNNATC	1 cut(s)	826
BseLI	CCNNNNNNNGG	3 cut(s)	604, 1090, 3059
BseMI	GCAATG	3 cut(s)	1174, 1870, 2253
BseNI	ACTGG	9 cut(s)	266, 595, 662, 967, 1273, 1517, 1555, 1568, 1843
BseRI	GAGGAG	5 cut(s)	200, 2684, 3108, 3581, 3797
BseSI	GKGCMC	2 cut(s)	1813, 3848
BseXI	GCAGC	8 cut(s)	1099, 2608, 2863, 3055, 3077, 3166, 3934, 4040
BseYI	CCCAGC	3 cut(s)	239, 721, 3071
BsgI	GTGCAG	2 cut(s)	410, 3084
Bsh1236I	CGCG	2 cut(s)	20, 304
BshFI	GGCC	9 cut(s)	54, 63, 452, 597, 986, 1288, 2355, 3474, 3537
BshNI	GGYRCC	4 cut(s)	342, 1486, 1808, 3032
BsiHKAI	GWGCWC	5 cut(s)	30, 707, 1584, 1726, 2986
BsiHKCI	CYCGRG	3 cut(s)	74, 1289, 1758
BsiSI	CCGG	8 cut(s)	37, 51, 161, 230, 453, 980, 3475, 3779
BslFI	GGGAC	3 cut(s)	1247, 1556, 1567
BslI	CCNNNNNNNGG	3 cut(s)	604, 1090, 3059
BsmBI	CGTCTC	2 cut(s)	149, 798
BsmFI	GGGAC	3 cut(s)	1247, 1556, 1567
BsnI	GGCC	9 cut(s)	54, 63, 452, 597, 986, 1288, 2355, 3474, 3537
BsoBI	CYCGRG	3 cut(s)	74, 1289, 1758
Bsp119I	TTCGAA	1 cut(s)	1068
Bsp1286I	GDGCHC	8 cut(s)	30, 707, 1584, 1726, 1759, 1813, 2986, 3848
Bsp13I	TCCGGA	1 cut(s)	3778
Bsp1407I	TGTACA	1 cut(s)	745
Bsp1720I	GCTNAGC	1 cut(s)	2622
Bsp19I	CCATGG	1 cut(s)	3346
BspACI	CCGC	9 cut(s)	18, 60, 90, 302, 304, 493, 1655, 1701, 3629
BspANI	GGCC	9 cut(s)	54, 63, 452, 597, 986, 1288, 2355, 3474, 3537
BspEI	TCCGGA	1 cut(s)	3778
BspFNI	CGCG	2 cut(s)	20, 304
BspHI	TCATGA	2 cut(s)	1747, 2781
BspMI	ACCTGC	1 cut(s)	382
BspOI	GCTAGC	1 cut(s)	4035
BspPI	GGATC	9 cut(s)	12, 364, 829, 1723, 2095, 2811, 3034, 3245, 3258
BspT104I	TTCGAA	1 cut(s)	1068
BspT107I	GGYRCC	4 cut(s)	342, 1486, 1808, 3032
BspTI	CTTAAG	1 cut(s)	3422
BsrDI	GCAATG	3 cut(s)	1174, 1870, 2253
BsrGI	TGTACA	1 cut(s)	745
BsrI	ACTGG	9 cut(s)	266, 595, 662, 967, 1273, 1517, 1555, 1568, 1843
BssECI	CCNNGG	8 cut(s)	302, 640, 987, 1290, 2799, 2904, 3058, 3346
BssNAI	GTATAC	2 cut(s)	679, 1194
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	640, 3346
Bst1107I	GTATAC	2 cut(s)	679, 1194
Bst2UI	CCWGG	9 cut(s)	507, 988, 2331, 2464, 2766, 2801, 2906, 3059, 3614
Bst6I	CTCTTC	5 cut(s)	89, 549, 2418, 2764, 2988
BstACI	GRCGYC	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	3422
BstAPI	GCANNNNNTGC	2 cut(s)	1151, 2357
BstAUI	TGTACA	1 cut(s)	745
BstBAI	YACGTR	2 cut(s)	1361, 1721
BstBI	TTCGAA	1 cut(s)	1068
BstC8I	GCNNGC	7 cut(s)	606, 2353, 2362, 3130, 3547, 3746, 4033
BstDSI	CCRYGG	2 cut(s)	302, 3346
BstF5I	GGATG	6 cut(s)	523, 784, 790, 916, 3356, 3506
BstFNI	CGCG	2 cut(s)	20, 304
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	4 cut(s)	99, 604, 2698, 3128
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 289, 298, 458, 727, 1151, 2357, 2361, 4001
BstNI	CCWGG	9 cut(s)	507, 988, 2331, 2464, 2766, 2801, 2906, 3059, 3614
BstNSI	RCATGY	8 cut(s)	2008, 2444, 2545, 2686, 3132, 3283, 3549, 3930
BstPAI	GACNNNNGTC	2 cut(s)	642, 2441
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	2 cut(s)	1813, 3848
BstUI	CGCG	2 cut(s)	20, 304
BstV1I	GCAGC	8 cut(s)	1099, 2608, 2863, 3055, 3077, 3166, 3934, 4040
BstX2I	RGATCY	5 cut(s)	4, 915, 2087, 3250, 3262
BstXI	CCANNNNNNTGG	2 cut(s)	353, 669
BstYI	RGATCY	5 cut(s)	4, 915, 2087, 3250, 3262
BstZ17I	GTATAC	2 cut(s)	679, 1194
Bsu36I	CCTNAGG	3 cut(s)	68, 1641, 2106
BsuI	GTATCC	1 cut(s)	1069
BsuRI	GGCC	9 cut(s)	54, 63, 452, 597, 986, 1288, 2355, 3474, 3537
BtgI	CCRYGG	2 cut(s)	302, 3346
BtsCI	GGATG	6 cut(s)	523, 784, 790, 916, 3356, 3506
BtsI	GCAGTG	2 cut(s)	254, 1582
BtsIMutI	CAGTG	6 cut(s)	254, 1266, 1314, 1582, 2397, 2937
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	7 cut(s)	606, 2353, 2362, 3130, 3547, 3746, 4033
CaiI	CAGNNNCTG	3 cut(s)	830, 1733, 3071
CciI	TCATGA	2 cut(s)	1747, 2781
CfoI	GCGC	4 cut(s)	99, 604, 2698, 3128
Cfr13I	GGNCC	6 cut(s)	455, 596, 637, 644, 1287, 1763
Cfr42I	CCGCGG	1 cut(s)	305
CseI	GACGC	3 cut(s)	166, 1725, 2446
DraI	TTTAAA	1 cut(s)	3940
DraIII	CACNNNGTG	1 cut(s)	3585
DrdI	GACNNNNNNGTC	1 cut(s)	163
DriI	GACNNNNNGTC	2 cut(s)	943, 1686
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	3 cut(s)	52, 61, 450
Eam1104I	CTCTTC	5 cut(s)	89, 549, 2418, 2764, 2988
Eam1105I	GACNNNNNGTC	2 cut(s)	943, 1686
EarI	CTCTTC	5 cut(s)	89, 549, 2418, 2764, 2988
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	640, 3346
Eco147I	AGGCCT	1 cut(s)	986
Eco24I	GRGCYC	2 cut(s)	30, 1759
Eco47I	GGWCC	4 cut(s)	455, 637, 644, 1763
Eco47III	AGCGCT	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	4 cut(s)	2102, 3287, 3509, 3906
Eco72I	CACGTG	1 cut(s)	1721
Eco81I	CCTNAGG	3 cut(s)	68, 1641, 2106
Eco88I	CYCGRG	3 cut(s)	74, 1289, 1758
EcoICRI	GAGCTC	1 cut(s)	28
EcoRI	GAATTC	2 cut(s)	2312, 3556
EcoRII	CCWGG	9 cut(s)	505, 986, 2329, 2462, 2764, 2799, 2904, 3057, 3612
EcoT14I	CCWWGG	2 cut(s)	640, 3346
EcoT22I	ATGCAT	3 cut(s)	1156, 2508, 3285
EcoT38I	GRGCYC	2 cut(s)	30, 1759
ErhI	CCWWGG	2 cut(s)	640, 3346
Esp3I	CGTCTC	2 cut(s)	149, 798
FalI	AAGNNNNNCTT	2 cut(s)	3141, 3173
FaqI	GGGAC	3 cut(s)	1247, 1556, 1567
FauNDI	CATATG	2 cut(s)	1785, 3122
FbaI	TGATCA	2 cut(s)	685, 2499
FblI	GTMKAC	2 cut(s)	678, 1193
FokI	GGATG	6 cut(s)	530, 791, 797, 923, 3363, 3513
FriOI	GRGCYC	2 cut(s)	30, 1759
FspAI	RTGCGCAY	1 cut(s)	3127
FspBI	CTAG	9 cut(s)	533, 1182, 2420, 2468, 2841, 2910, 3605, 3740, 4032
FspI	TGCGCA	2 cut(s)	603, 3127
GlaI	GCGC	4 cut(s)	98, 603, 2697, 3127
GsaI	CCCAGC	3 cut(s)	243, 725, 3075
GsuI	CTGGAG	3 cut(s)	1620, 1710, 3225
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	9 cut(s)	54, 63, 452, 597, 986, 1288, 2355, 3474, 3537
HapII	CCGG	8 cut(s)	37, 51, 161, 230, 453, 980, 3475, 3779
HgaI	GACGC	3 cut(s)	166, 1725, 2446
HhaI	GCGC	4 cut(s)	99, 604, 2698, 3128
Hin1I	GRCGYC	1 cut(s)	158
Hin6I	GCGC	4 cut(s)	97, 602, 2696, 3126
HinP1I	GCGC	4 cut(s)	97, 602, 2696, 3126
HindIII	AAGCTT	1 cut(s)	3753
HpaII	CCGG	8 cut(s)	37, 51, 161, 230, 453, 980, 3475, 3779
HphI	GGTGA	4 cut(s)	79, 980, 1283, 3088
Hpy166II	GTNNAC	6 cut(s)	679, 971, 1001, 1194, 3309, 3869
Hpy8I	GTNNAC	6 cut(s)	679, 971, 1001, 1194, 3309, 3869
HpyCH4IV	ACGT	7 cut(s)	409, 1003, 1360, 1720, 1771, 2980, 4012
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 289, 298, 458, 727, 1151, 2357, 2361, 4001
HpySE526I	ACGT	7 cut(s)	409, 1003, 1360, 1720, 1771, 2980, 4012
Hsp92I	GRCGYC	1 cut(s)	158
HspAI	GCGC	4 cut(s)	97, 602, 2696, 3126
Kpn2I	TCCGGA	1 cut(s)	3778
Ksp22I	TGATCA	2 cut(s)	685, 2499
KspI	CCGCGG	1 cut(s)	305
Lsp1109I	GCAGC	8 cut(s)	1099, 2608, 2863, 3055, 3077, 3166, 3934, 4040
LweI	GCATC	9 cut(s)	492, 1175, 1888, 2515, 2598, 3292, 3447, 3499, 3959
MaeI	CTAG	9 cut(s)	533, 1182, 2420, 2468, 2841, 2910, 3605, 3740, 4032
MaeII	ACGT	7 cut(s)	409, 1003, 1360, 1720, 1771, 2980, 4012
MaeIII	GTNAC	7 cut(s)	330, 1546, 1914, 1941, 2060, 4013, 4042
MfeI	CAATTG	3 cut(s)	812, 1876, 2172
MflI	RGATCY	5 cut(s)	4, 915, 2087, 3250, 3262
MhlI	GDGCHC	8 cut(s)	30, 707, 1584, 1726, 1759, 1813, 2986, 3848
MlyI	GAGTC	6 cut(s)	173, 437, 845, 932, 1106, 1696
MmeI	TCCRAC	5 cut(s)	126, 267, 1237, 2431, 3189
Mph1103I	ATGCAT	3 cut(s)	1156, 2508, 3285
MroI	TCCGGA	1 cut(s)	3778
MroXI	GAANNNNTTC	1 cut(s)	3447
MslI	CAYNNNNRTG	2 cut(s)	2345, 3060
MspA1I	CMGCKG	7 cut(s)	60, 304, 1127, 1701, 1997, 3068, 3205
MspCI	CTTAAG	1 cut(s)	3422
MspI	CCGG	8 cut(s)	37, 51, 161, 230, 453, 980, 3475, 3779
MunI	CAATTG	3 cut(s)	812, 1876, 2172
MvaI	CCWGG	9 cut(s)	507, 988, 2331, 2464, 2766, 2801, 2906, 3059, 3614
MvnI	CGCG	2 cut(s)	20, 304
MwoI	GCNNNNNNNGC	9 cut(s)	60, 289, 298, 458, 727, 1151, 2357, 2361, 4001
NciI	CCSGG	2 cut(s)	38, 980
NcoI	CCATGG	1 cut(s)	3346
NdeI	CATATG	2 cut(s)	1785, 3122
NheI	GCTAGC	1 cut(s)	4031
NmeAIII	GCCGAG	2 cut(s)	118, 228
NmuCI	GTSAC	5 cut(s)	1914, 1941, 2060, 4013, 4042
NsbI	TGCGCA	2 cut(s)	603, 3127
NsiI	ATGCAT	3 cut(s)	1156, 2508, 3285
NspI	RCATGY	8 cut(s)	2008, 2444, 2545, 2686, 3132, 3283, 3549, 3930
NspV	TTCGAA	1 cut(s)	1068
OliI	CACNNNNGTG	1 cut(s)	3060
PaeI	GCATGC	2 cut(s)	3132, 3549
PaeR7I	CTCGAG	2 cut(s)	74, 1758
PagI	TCATGA	2 cut(s)	1747, 2781
PceI	AGGCCT	1 cut(s)	986
PciI	ACATGT	2 cut(s)	2682, 3926
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	3447
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	2 cut(s)	505, 2764
PleI	GAGTC	6 cut(s)	172, 436, 844, 932, 1105, 1695
PmaCI	CACGTG	1 cut(s)	1721
PmlI	CACGTG	1 cut(s)	1721
PpsI	GAGTC	6 cut(s)	172, 436, 844, 932, 1105, 1695
Ppu21I	YACGTR	2 cut(s)	1361, 1721
PscI	ACATGT	2 cut(s)	2682, 3926
PshAI	GACNNNNGTC	2 cut(s)	642, 2441
PshBI	ATTAAT	1 cut(s)	3638
PsiI	TTATAA	1 cut(s)	1442
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	9 cut(s)	505, 986, 2329, 2462, 2764, 2799, 2904, 3057, 3612
PspCI	CACGTG	1 cut(s)	1721
PspFI	CCCAGC	3 cut(s)	239, 721, 3071
PspGI	CCWGG	9 cut(s)	505, 986, 2329, 2462, 2764, 2799, 2904, 3057, 3612
PspPI	GGNCC	6 cut(s)	455, 596, 637, 644, 1287, 1763
PspXI	VCTCGAGB	2 cut(s)	74, 1758
PstNI	CAGNNNCTG	3 cut(s)	830, 1733, 3071
PsuI	RGATCY	5 cut(s)	4, 915, 2087, 3250, 3262
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	4 cut(s)	1127, 1997, 3068, 3205
RseI	CAYNNNNRTG	2 cut(s)	2345, 3060
SacI	GAGCTC	1 cut(s)	30
SacII	CCGCGG	1 cut(s)	305
Sau96I	GGNCC	6 cut(s)	455, 596, 637, 644, 1287, 1763
SchI	GAGTC	6 cut(s)	173, 437, 845, 932, 1106, 1696
SduI	GDGCHC	8 cut(s)	30, 707, 1584, 1726, 1759, 1813, 2986, 3848
SfaNI	GCATC	9 cut(s)	492, 1175, 1888, 2515, 2598, 3292, 3447, 3499, 3959
SfcI	CTRYAG	1 cut(s)	414
SfiI	GGCCNNNNNGGCC	1 cut(s)	60
Sfr274I	CTCGAG	2 cut(s)	74, 1758
Sfr303I	CCGCGG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	1068
SgrBI	CCGCGG	1 cut(s)	305
SinI	GGWCC	4 cut(s)	455, 637, 644, 1763
SlaI	CTCGAG	2 cut(s)	74, 1758
SmiMI	CAYNNNNRTG	2 cut(s)	2345, 3060
SmlI	CTYRAG	7 cut(s)	74, 650, 1282, 1758, 3161, 3422, 3803
SmoI	CTYRAG	7 cut(s)	74, 650, 1282, 1758, 3161, 3422, 3803
SphI	GCATGC	2 cut(s)	3132, 3549
SseBI	AGGCCT	1 cut(s)	986
SsiI	CCGC	9 cut(s)	18, 60, 90, 302, 304, 493, 1655, 1701, 3629
SspI	AATATT	1 cut(s)	2718
SspMI	CTAG	9 cut(s)	533, 1182, 2420, 2468, 2841, 2910, 3605, 3740, 4032
SstI	GAGCTC	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	986
StyI	CCWWGG	2 cut(s)	640, 3346
TaiI	ACGT	7 cut(s)	412, 1006, 1363, 1723, 1774, 2983, 4015
TaqI	TCGA	9 cut(s)	75, 167, 258, 1068, 1251, 1410, 1759, 2231, 2640
TatI	WGTACW	2 cut(s)	745, 2685
TauI	GCSGC	4 cut(s)	20, 63, 304, 1658
TscAI	CASTG	6 cut(s)	254, 1273, 1321, 1589, 2397, 2944
TseFI	GTSAC	5 cut(s)	1914, 1941, 2060, 4013, 4042
TseI	GCWGC	8 cut(s)	1112, 2596, 2851, 3065, 3068, 3179, 3947, 4028
Tsp45I	GTSAC	5 cut(s)	1914, 1941, 2060, 4013, 4042
TspDTI	ATGAA	9 cut(s)	414, 729, 861, 1382, 1624, 1886, 2427, 2798, 3569
TspGWI	ACGGA	3 cut(s)	1532, 1537, 3596
TspRI	CASTG	6 cut(s)	254, 1273, 1321, 1589, 2397, 2944
Tth111I	GACNNNGTC	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	3422
VpaK11BI	GGWCC	4 cut(s)	455, 637, 644, 1763
VspI	ATTAAT	1 cut(s)	3638
XapI	RAATTY	8 cut(s)	1024, 1247, 1825, 2098, 2297, 2312, 3556, 3935
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	8 cut(s)	2008, 2444, 2545, 2686, 3132, 3283, 3549, 3930
XcmI	CCANNNNNNNNNTGG	2 cut(s)	587, 2141
XhoI	CTCGAG	2 cut(s)	74, 1758
XmiI	GTMKAC	2 cut(s)	678, 1193
XmnI	GAANNNNTTC	1 cut(s)	3447
XspI	CTAG	9 cut(s)	533, 1182, 2420, 2468, 2841, 2910, 3605, 3740, 4032
Zsp2I	ATGCAT	3 cut(s)	1156, 2508, 3285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.