Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005110

Physical Location & Seq

Genomic Coordinates Forward (+)

52729822 .. 52732919

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGCTGTGCCCGGAAGGATGCTAGTTATGCAACTGATCATAGTGGTGGCCATAGCAGCAGCAGCAGCTGATCGAACCCCATCTCCTCAAGCACTACCTGGCTGCCCCGACCACTGTGGTAATCTCACAATCCCATATCCTTTCGGCATCGGGGAGGGTTGTTTCCAGCGAGAATGGTTCAACCTCACTTGTAACGAATCCGCCGAACCCCCAACAACACTCTTGGGCGATGGTAGTGTCACGGTTACTAACATATTGCTTGCTGAAGGTGAATTGGAGATTTTGAGTTACATAGCCTATGATTGTTATGATCAGCAGGGTAATCAAACAGAAGACATGTCCAATTCCCCTTATCTCCGGTTGCATCCTTCTTTCACCATCTCCGAGACCAGAAACAAGTTTATTGCCGTTGGCTGCGACACTTATGCAATTTTCAAAGGGTACCGCCCTTACCCTCATGACGAAGATAGGTACATCACCGGATGCATGTCTATATGTGACAGTCTTGACAGTGCAGTTTACGGTTCGTGCTCTGGCATTGGGTGTTGCGAAACTTCCATCCCTAGCGGACTCAAAAATCGCTCCATCAATTTGGATAGCTATTCTCAACACAAGGACGTGTGGGGCTTCAATCCATGCAGCTACGCCTTCATTGTGGAAGAAGGCAGGTTCACATTCAACCCTAATACAAGTTTTGAAGAACTCAACAACACTGAAAAACTTCCCATGATTATTAACTGGGCTATTAATGAAAGGTCATGTGCTCTAGCTCAAAACAGGCCTGGTTATGCTTGCAAAGCAAATAGCAACTGTGTCAATCGGACCGTCGATAACCAGACTGAACCAACTGGTTATTATTGCCAGTGCTTGCCAGGCTACGAAGGGAACCCATATCTTCCAGATGGTTGCCAAGATATTGACGAGTGCATGGCTCCAACAAGTCCCTGCAACAATGGAATATGCCAAAATTCACCTGGAGGTTACAGCTGTTTATGTAACAAAGGTTTCAAAAACCAGGACTCAAAGATTTGCATAAAAAACACTCCCGTGTCAAAGAACATTCCCCTGAAAATTTCGATGGGTCTCAGTATAGGCTTCTTCATTTTAGTGGTTTTAATTTGGTGGACTTATTGGGGAATGAACAAACGAAGATTAGTTAGACTCAAAGAAAAGTACTTCCAAGAAAATGGTGGCTCAACATTACAGCAACATCTCGCTAGTCATGGAGGATCTGTTGAGACAGCAAAAATCTTTACTGCAGAGGAACTTCAGAAAGCCACAAACAATTACCATGTAGATGAAATCCTTGGTGAAGGAGGCTATGCAACAGTTTACAAAGGAATACTACATGATAAGAGTGTTGTTGCCATAAAGAAGCCAAAGATTGGCGCTCCAACTCAAAGTGATCAGTTCGTTAATGAGGTTATCGTTCTTTCTCAGATAAACCACAGAAATGTAGTAAAACTATTAGGTTGTTGTTTCGAGACCGAAGTGCCTTTACTGGTATATGAGTACATTACTCATGGCACTCTTTTCGAGCATGTATTCAATAAGGGAAAAGGATCCTCACTTTCATGGGAATTACGATTGAAGATAGCATCAGAAACTGCTGGCGCACTAGCATACTTACACTCATCTACTTCCACTCCAATCATACATAGAGACGTGAAAACAACGAATATATTATTGGATGACAATTACACGGCCAAAGTGTCTGATTTTGGAGCTTCGCGTTTCATTCCTCTAGATCAAACTCAACTTGCAACACTGGTTCAAGGGACGCTTGGATACTTGGATCCTGAATACTTTCATTCAAACCAACTAACTGAAAAGAGTGACGTCTATAGTTTTGGAGTTGTCCTAGCGGAGCTACTAACAAGTAGAGTTGCACTTTCTTTTGCCAGGCCTGACAAGGAGAGATGCCTAGCAAGCTTCTTTGTTTCTTCAATAGAAAACGAATGCTTGATTCAAATTCTTGATGCTGATATAGTGAATGAGGGGAACATAGAGACAGTAGAGCAAGTGGCGAATCTGGCAAAAAGATGTTTGATGATAAAAAGTGAGGAAAGGCCTACGATGAGAGAAGTTGCCATGGAGTTAGAAGGGATGAGAATTATGGCAACGCATCCATGGAAAAATGGCAATTCCGGCTTTGAGGAGACTGAGTACTTGCTCGGGTCACCTAATTCAGCGGCTTATGTGATGAATATTGGAGATGGAGGTGCCGATGGTTCTAGCGTTACAAATACTGGGTATGACAGCATGCAAATACAAATGTTAATGCCCTACGATGACGGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

767

Amino Acids

84.77

Weight (kDa)

5.05

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	35 - 94	2.2e-12	Wall-associated receptor kinase galacturonan-binding
EGF_CA	PF07645	305 - 344	5.8e-09	Calcium-binding EGF domain
Pkinase	PF00069	430 - 696	2.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	432 - 700	1.3e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46960 AT3G46960 AT3G46960
fragaria_vesca	FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880
malus_domestica	MD03G1077900.v1.1 MD11G1082500.v1.1
prunus_persica	Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1
pyrus_communis	pycom03g06210 pycom11g07060
rosa_chinensis	RchiOBHm_Chr5g0068091
rosa_laevigata	RLG00000035954
rosa_multiflora	Rmu_sc0000435.1_g000017
rosa_roxburghii	Rroxscaffold_1G00012520 Rroxscaffold_1G00013260
rosa_rugosa	Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500
rosa_samantha	Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400
rosa_wichuraiana	Rw5G041700 Rw5G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1842
Acc36I	ACCTGC	1 cut(s)	657
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	2 cut(s)	441, 2222
AccB7I	CCANNNNNTGG	1 cut(s)	1385
AccII	CGCG	1 cut(s)	1732
AciI	CCGC	5 cut(s)	201, 445, 567, 1865, 2192
AclWI	GGATC	5 cut(s)	1237, 1557, 1570, 1790, 1803
AcoI	YGGCCR	2 cut(s)	48, 1704
AcsI	RAATTY	3 cut(s)	967, 1071, 1971
AcuI	CTGAAG	2 cut(s)	285, 1253
AcyI	GRCGYC	1 cut(s)	1839
AfaI	GTAC	5 cut(s)	443, 473, 1175, 1514, 2168
AfiI	CCNNNNNNNGG	1 cut(s)	1385
AflIII	ACRYGT	2 cut(s)	336, 618
AjiI	CACGTC	2 cut(s)	619, 1666
AjnI	CCWGG	6 cut(s)	97, 781, 871, 973, 1014, 1901
AjuI	GAANNNNNNNTTGG	2 cut(s)	1670, 1702
AleI	CACNNNNGTG	1 cut(s)	1046
AloI	GAACNNNNNNTCC	2 cut(s)	67, 99
AluBI	AGCT	8 cut(s)	68, 600, 642, 770, 987, 1727, 1870, 1932
AluI	AGCT	8 cut(s)	68, 600, 642, 770, 987, 1727, 1870, 1932
Alw21I	GWGCWC	2 cut(s)	533, 766
Alw26I	GTCTC	7 cut(s)	380, 1088, 1232, 1478, 1656, 2003, 2153
AlwI	GGATC	5 cut(s)	1237, 1557, 1570, 1790, 1803
AlwNI	CAGNNNCTG	2 cut(s)	68, 1607
Ama87I	CYCGRG	1 cut(s)	2174
AoxI	GGCC	5 cut(s)	48, 779, 1704, 1904, 2069
ApeKI	GCWGC	7 cut(s)	56, 59, 62, 65, 102, 414, 639
ApoI	RAATTY	3 cut(s)	967, 1071, 1971
AseI	ATTAAT	1 cut(s)	747
Asp700I	GAANNNNTTC	2 cut(s)	720, 1806
Asp718I	GGTACC	1 cut(s)	441
AspLEI	GCGC	2 cut(s)	1391, 1616
AspS9I	GGNCC	1 cut(s)	822
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	6 cut(s)	281, 367, 469, 963, 1322, 2172
AvaI	CYCGRG	1 cut(s)	2174
AvaII	GGWCC	1 cut(s)	822
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	50
BamHI	GGATCC	2 cut(s)	1562, 1795
BanI	GGYRCC	2 cut(s)	441, 2222
BarI	GAAGNNNNNNTAC	2 cut(s)	1482, 1514
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	533, 766
BbvI	GCAGC	7 cut(s)	68, 71, 74, 77, 89, 401, 651
BccI	CCATC	9 cut(s)	88, 224, 386, 566, 593, 896, 1072, 2210, 2222
BceAI	ACGGC	2 cut(s)	392, 1719
BcgI	CGANNNNNNTGC	4 cut(s)	407, 441, 1516, 1550
BciT130I	CCWGG	6 cut(s)	99, 783, 873, 975, 1016, 1903
BciVI	GTATCC	1 cut(s)	1781
BclI	TGATCA	3 cut(s)	36, 310, 1405
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	7 cut(s)	380, 1088, 1232, 1478, 1656, 2003, 2153
BfaI	CTAG	9 cut(s)	23, 564, 767, 1218, 1619, 1745, 1862, 1925, 2235
BfmI	CTRYAG	2 cut(s)	1257, 1843
BfoI	RGCGCY	1 cut(s)	1392
BfuAI	ACCTGC	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	1781
BisI	GCNGC	8 cut(s)	57, 60, 63, 66, 103, 415, 640, 2193
BlsI	GCNGC	8 cut(s)	58, 61, 64, 67, 104, 416, 641, 2194
BmcAI	AGTACT	2 cut(s)	1175, 2168
Bme1390I	CCNGG	7 cut(s)	12, 99, 783, 873, 975, 1016, 1903
Bme18I	GGWCC	1 cut(s)	822
BmeT110I	CYCGRG	1 cut(s)	2174
BmgBI	CACGTC	2 cut(s)	619, 1666
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	6 cut(s)	443, 887, 933, 1564, 1797, 2224
BmrFI	CCNGG	7 cut(s)	12, 99, 783, 873, 975, 1016, 1903
BmrI	ACTGGG	2 cut(s)	748, 2259
BmsI	GCATC	8 cut(s)	9, 156, 373, 473, 1607, 1910, 1969, 2134
BmuI	ACTGGG	2 cut(s)	748, 2259
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	1839
BsaI	GGTCTC	3 cut(s)	380, 1088, 1478
BsaJI	CCNNGG	3 cut(s)	1306, 2091, 2129
BsaWI	WCCGGW	2 cut(s)	357, 479
BsaXI	ACNNNNNCTCC	8 cut(s)	67, 97, 1218, 1248, 1630, 1660, 2150, 2180
Bsc4I	CCNNNNNNNGG	1 cut(s)	1385
Bse1I	ACTGG	6 cut(s)	743, 853, 862, 1506, 1773, 2254
BseBI	CCWGG	6 cut(s)	99, 783, 873, 975, 1016, 1903
BseDI	CCNNGG	3 cut(s)	1306, 2091, 2129
BseGI	GGATG	7 cut(s)	24, 364, 488, 558, 1696, 2112, 2125
BseLI	CCNNNNNNNGG	1 cut(s)	1385
BseMII	CTCAG	3 cut(s)	1099, 1451, 2154
BseNI	ACTGG	6 cut(s)	743, 853, 862, 1506, 1773, 2254
BseRI	GAGGAG	2 cut(s)	75, 2171
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	7 cut(s)	68, 71, 74, 77, 89, 401, 651
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	1732
BshFI	GGCC	5 cut(s)	50, 781, 1706, 1906, 2071
BshNI	GGYRCC	2 cut(s)	441, 2222
BsiHKAI	GWGCWC	2 cut(s)	533, 766
BsiHKCI	CYCGRG	1 cut(s)	2174
BsiSI	CCGG	4 cut(s)	12, 358, 480, 2148
BslFI	GGGAC	2 cut(s)	927, 1792
BslI	CCNNNNNNNGG	1 cut(s)	1385
BsmAI	GTCTC	7 cut(s)	380, 1088, 1232, 1478, 1656, 2003, 2153
BsmBI	CGTCTC	1 cut(s)	1656
BsmFI	GGGAC	2 cut(s)	927, 1792
BsmI	GAATGC	1 cut(s)	1964
BsnI	GGCC	5 cut(s)	50, 781, 1706, 1906, 2071
Bso31I	GGTCTC	3 cut(s)	380, 1088, 1478
BsoBI	CYCGRG	1 cut(s)	2174
Bsp1286I	GDGCHC	3 cut(s)	12, 533, 766
Bsp143I	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
Bsp19I	CCATGG	2 cut(s)	2091, 2129
BspACI	CCGC	5 cut(s)	201, 445, 567, 1865, 2192
BspANI	GGCC	5 cut(s)	50, 781, 1706, 1906, 2071
BspCNI	CTCAG	3 cut(s)	1098, 1450, 2155
BspFNI	CGCG	1 cut(s)	1732
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	6 cut(s)	443, 887, 933, 1564, 1797, 2224
BspMAI	CTGCAG	1 cut(s)	1261
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	5 cut(s)	1237, 1557, 1570, 1790, 1803
BspT107I	GGYRCC	2 cut(s)	441, 2222
BspTNI	GGTCTC	3 cut(s)	380, 1088, 1478
BsrI	ACTGG	6 cut(s)	743, 853, 862, 1506, 1773, 2254
BssECI	CCNNGG	3 cut(s)	1306, 2091, 2129
BssMI	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
BssNI	GRCGYC	1 cut(s)	1839
BssT1I	CCWWGG	3 cut(s)	1306, 2091, 2129
Bst2UI	CCWGG	6 cut(s)	99, 783, 873, 975, 1016, 1903
Bst4CI	ACNGT	9 cut(s)	116, 244, 503, 512, 524, 812, 826, 1330, 2014
BstACI	GRCGYC	1 cut(s)	1839
BstC8I	GCNNGC	6 cut(s)	261, 793, 869, 1612, 1930, 2264
BstDEI	CTNAG	3 cut(s)	1085, 1437, 2163
BstDSI	CCRYGG	2 cut(s)	2091, 2129
BstEII	GGTNACC	1 cut(s)	2178
BstF5I	GGATG	7 cut(s)	24, 364, 488, 558, 1696, 2112, 2125
BstFNI	CGCG	1 cut(s)	1732
BstH2I	RGCGCY	1 cut(s)	1392
BstHHI	GCGC	2 cut(s)	1391, 1616
BstKTI	GATC	8 cut(s)	39, 73, 313, 1232, 1408, 1565, 1750, 1798
BstMAI	GTCTC	7 cut(s)	380, 1088, 1232, 1478, 1656, 2003, 2153
BstMBI	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
BstMWI	GCNNNNNNNGC	9 cut(s)	28, 56, 62, 65, 797, 873, 1929, 2033, 2148
BstNI	CCWGG	6 cut(s)	99, 783, 873, 975, 1016, 1903
BstNSI	RCATGY	4 cut(s)	340, 490, 1544, 2266
BstPI	GGTNACC	1 cut(s)	2178
BstSCI	CCNGG	7 cut(s)	10, 97, 781, 871, 973, 1014, 1901
BstSFI	CTRYAG	2 cut(s)	1257, 1843
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	1732
BstV1I	GCAGC	7 cut(s)	68, 71, 74, 77, 89, 401, 651
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	3 cut(s)	1229, 1562, 1795
BstXI	CCANNNNNNTGG	2 cut(s)	592, 1187
BstYI	RGATCY	3 cut(s)	1229, 1562, 1795
BsuI	GTATCC	1 cut(s)	1781
BsuRI	GGCC	5 cut(s)	50, 781, 1706, 1906, 2071
BtgI	CCRYGG	2 cut(s)	2091, 2129
BtgZI	GCGATG	1 cut(s)	243
BtrI	CACGTC	2 cut(s)	619, 1666
BtsCI	GGATG	7 cut(s)	24, 364, 488, 558, 1696, 2112, 2125
BtsIMutI	CAGTG	5 cut(s)	112, 517, 711, 869, 1766
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	6 cut(s)	261, 793, 869, 1612, 1930, 2264
CaiI	CAGNNNCTG	2 cut(s)	68, 1607
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	2 cut(s)	1391, 1616
Cfr13I	GGNCC	1 cut(s)	822
CpoI	CGGWCCG	1 cut(s)	822
CseI	GACGC	1 cut(s)	1789
Csp6I	GTAC	5 cut(s)	442, 472, 1174, 1513, 2167
CspI	CGGWCCG	1 cut(s)	822
CviQI	GTAC	5 cut(s)	442, 472, 1174, 1513, 2167
DdeI	CTNAG	3 cut(s)	1085, 1437, 2163
DpnI	GATC	8 cut(s)	38, 72, 312, 1231, 1407, 1564, 1749, 1797
DpnII	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
EaeI	YGGCCR	2 cut(s)	48, 1704
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	3 cut(s)	1306, 2091, 2129
Eco147I	AGGCCT	3 cut(s)	781, 1906, 2071
Eco31I	GGTCTC	3 cut(s)	380, 1088, 1478
Eco47I	GGWCC	1 cut(s)	822
Eco57I	CTGAAG	2 cut(s)	285, 1253
Eco88I	CYCGRG	1 cut(s)	2174
Eco91I	GGTNACC	1 cut(s)	2178
EcoO65I	GGTNACC	1 cut(s)	2178
EcoRII	CCWGG	6 cut(s)	97, 781, 871, 973, 1014, 1901
EcoT14I	CCWWGG	3 cut(s)	1306, 2091, 2129
EcoT22I	ATGCAT	1 cut(s)	488
ErhI	CCWWGG	3 cut(s)	1306, 2091, 2129
Esp3I	CGTCTC	1 cut(s)	1656
FalI	AAGNNNNNCTT	2 cut(s)	1767, 1799
FaqI	GGGAC	2 cut(s)	927, 1792
FbaI	TGATCA	3 cut(s)	36, 310, 1405
Fnu4HI	GCNGC	8 cut(s)	57, 60, 63, 66, 103, 415, 640, 2193
FokI	GGATG	7 cut(s)	31, 351, 495, 545, 1703, 2112, 2119
Fsp4HI	GCNGC	8 cut(s)	57, 60, 63, 66, 103, 415, 640, 2193
FspBI	CTAG	9 cut(s)	23, 564, 767, 1218, 1619, 1745, 1862, 1925, 2235
GlaI	GCGC	2 cut(s)	1390, 1615
GluI	GCNGC	8 cut(s)	57, 60, 63, 66, 103, 415, 640, 2193
GsuI	CTGGAG	1 cut(s)	996
HaeII	RGCGCY	1 cut(s)	1392
HaeIII	GGCC	5 cut(s)	50, 781, 1706, 1906, 2071
HapII	CCGG	4 cut(s)	12, 358, 480, 2148
HgaI	GACGC	1 cut(s)	1789
HhaI	GCGC	2 cut(s)	1391, 1616
Hin1I	GRCGYC	1 cut(s)	1839
Hin6I	GCGC	2 cut(s)	1389, 1614
HinP1I	GCGC	2 cut(s)	1389, 1614
HindIII	AAGCTT	1 cut(s)	1930
HinfI	GANTC	6 cut(s)	197, 570, 1019, 1161, 1966, 2029
HpaII	CCGG	4 cut(s)	12, 358, 480, 2148
HphI	GGTGA	6 cut(s)	281, 367, 469, 963, 1322, 2172
Hpy166II	GTNNAC	4 cut(s)	520, 672, 1125, 1333
Hpy188I	TCNGA	6 cut(s)	385, 822, 1272, 1440, 1603, 1717
Hpy188III	TCNNGA	7 cut(s)	458, 506, 899, 1483, 1745, 1799, 1976
Hpy8I	GTNNAC	4 cut(s)	520, 672, 1125, 1333
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	8 cut(s)	9, 260, 378, 656, 658, 875, 1307, 2096
HpyCH4III	ACNGT	9 cut(s)	116, 244, 503, 512, 524, 812, 826, 1330, 2014
HpyCH4IV	ACGT	3 cut(s)	618, 1665, 1839
HpyF10VI	GCNNNNNNNGC	9 cut(s)	28, 56, 62, 65, 797, 873, 1929, 2033, 2148
HpyF3I	CTNAG	3 cut(s)	1085, 1437, 2163
HpySE526I	ACGT	3 cut(s)	618, 1665, 1839
Hsp92I	GRCGYC	1 cut(s)	1839
HspAI	GCGC	2 cut(s)	1389, 1614
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	3 cut(s)	36, 310, 1405
Kzo9I	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
LmnI	GCTCC	5 cut(s)	587, 937, 1396, 1724, 1867
Lsp1109I	GCAGC	7 cut(s)	68, 71, 74, 77, 89, 401, 651
LweI	GCATC	8 cut(s)	9, 156, 373, 473, 1607, 1910, 1969, 2134
MaeI	CTAG	9 cut(s)	23, 564, 767, 1218, 1619, 1745, 1862, 1925, 2235
MaeII	ACGT	3 cut(s)	618, 1665, 1839
MalI	GATC	8 cut(s)	38, 72, 312, 1231, 1407, 1564, 1749, 1797
MboI	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
MboII	GAAGA	9 cut(s)	344, 476, 671, 710, 887, 1090, 1161, 1603, 1935
MflI	RGATCY	3 cut(s)	1229, 1562, 1795
MhlI	GDGCHC	3 cut(s)	12, 533, 766
MlsI	TGGCCA	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	3 cut(s)	564, 1013, 1155
MmeI	TCCRAC	2 cut(s)	959, 1418
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	488
MroXI	GAANNNNTTC	2 cut(s)	720, 1806
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	5 cut(s)	735, 747, 1115, 1416, 2279
MslI	CAYNNNNRTG	6 cut(s)	44, 1046, 1106, 1296, 1452, 1573
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	3 cut(s)	68, 987, 2192
MspI	CCGG	4 cut(s)	12, 358, 480, 2148
MspR9I	CCNGG	7 cut(s)	12, 99, 783, 873, 975, 1016, 1903
Mva1269I	GAATGC	1 cut(s)	1964
MvaI	CCWGG	6 cut(s)	99, 783, 873, 975, 1016, 1903
MvnI	CGCG	1 cut(s)	1732
MwoI	GCNNNNNNNGC	9 cut(s)	28, 56, 62, 65, 797, 873, 1929, 2033, 2148
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	2 cut(s)	2091, 2129
NdeII	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
NlaIV	GGNNCC	6 cut(s)	443, 887, 933, 1564, 1797, 2224
NmuCI	GTSAC	4 cut(s)	238, 497, 1835, 2178
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	4 cut(s)	340, 490, 1544, 2266
OliI	CACNNNNGTG	1 cut(s)	1046
PaeI	GCATGC	1 cut(s)	2266
PagI	TCATGA	1 cut(s)	457
PceI	AGGCCT	3 cut(s)	781, 1906, 2071
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	1964
PdmI	GAANNNNTTC	2 cut(s)	720, 1806
PfeI	GAWTC	3 cut(s)	197, 1966, 2029
PflMI	CCANNNNNTGG	1 cut(s)	1385
PkrI	GCNGC	8 cut(s)	58, 61, 64, 67, 104, 416, 641, 2194
PleI	GAGTC	3 cut(s)	564, 1013, 1155
PpsI	GAGTC	3 cut(s)	564, 1013, 1155
PscI	ACATGT	1 cut(s)	336
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	6 cut(s)	97, 781, 871, 973, 1014, 1901
PspEI	GGTNACC	1 cut(s)	2178
PspGI	CCWGG	6 cut(s)	97, 781, 871, 973, 1014, 1901
PspN4I	GGNNCC	6 cut(s)	443, 887, 933, 1564, 1797, 2224
PspPI	GGNCC	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	1261
PstNI	CAGNNNCTG	2 cut(s)	68, 1607
PsuI	RGATCY	3 cut(s)	1229, 1562, 1795
PvuII	CAGCTG	2 cut(s)	68, 987
RsaI	GTAC	5 cut(s)	443, 473, 1175, 1514, 2168
RsaNI	GTAC	5 cut(s)	442, 472, 1174, 1513, 2167
RseI	CAYNNNNRTG	6 cut(s)	44, 1046, 1106, 1296, 1452, 1573
Rsr2I	CGGWCCG	1 cut(s)	822
RsrII	CGGWCCG	1 cut(s)	822
SaqAI	TTAA	5 cut(s)	735, 747, 1115, 1416, 2279
SatI	GCNGC	8 cut(s)	57, 60, 63, 66, 103, 415, 640, 2193
Sau3AI	GATC	8 cut(s)	36, 70, 310, 1229, 1405, 1562, 1747, 1795
Sau96I	GGNCC	1 cut(s)	822
ScaI	AGTACT	2 cut(s)	1175, 2168
SchI	GAGTC	3 cut(s)	564, 1013, 1155
ScrFI	CCNGG	7 cut(s)	12, 99, 783, 873, 975, 1016, 1903
SduI	GDGCHC	3 cut(s)	12, 533, 766
SfaNI	GCATC	8 cut(s)	9, 156, 373, 473, 1607, 1910, 1969, 2134
SfcI	CTRYAG	2 cut(s)	1257, 1843
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	6 cut(s)	44, 1046, 1106, 1296, 1452, 1573
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	2266
SseBI	AGGCCT	3 cut(s)	781, 1906, 2071
SsiI	CCGC	5 cut(s)	201, 445, 567, 1865, 2192
SspI	AATATT	1 cut(s)	2209
SspMI	CTAG	9 cut(s)	23, 564, 767, 1218, 1619, 1745, 1862, 1925, 2235
StuI	AGGCCT	3 cut(s)	781, 1906, 2071
StyD4I	CCNGG	7 cut(s)	10, 97, 781, 871, 973, 1014, 1901
StyI	CCWWGG	3 cut(s)	1306, 2091, 2129
TaaI	ACNGT	9 cut(s)	116, 244, 503, 512, 524, 812, 826, 1330, 2014
TaiI	ACGT	3 cut(s)	621, 1668, 1842
TaqI	TCGA	5 cut(s)	73, 828, 1076, 1482, 1536
TaqII	GACCGA	1 cut(s)	1502
TatI	WGTACW	3 cut(s)	1173, 1512, 2166
TauI	GCSGC	1 cut(s)	2195
TfiI	GAWTC	3 cut(s)	197, 1966, 2029
Tru1I	TTAA	5 cut(s)	735, 747, 1115, 1416, 2279
Tru9I	TTAA	5 cut(s)	735, 747, 1115, 1416, 2279
TscAI	CASTG	5 cut(s)	119, 517, 718, 869, 1773
TseFI	GTSAC	4 cut(s)	238, 497, 1835, 2178
TseI	GCWGC	7 cut(s)	56, 59, 62, 65, 102, 414, 639
Tsp45I	GTSAC	4 cut(s)	238, 497, 1835, 2178
TspDTI	ATGAA	9 cut(s)	640, 765, 1090, 1154, 1314, 1563, 1726, 1799, 2219
TspRI	CASTG	5 cut(s)	119, 517, 718, 869, 1773
Van91I	CCANNNNNTGG	1 cut(s)	1385
VpaK11BI	GGWCC	1 cut(s)	822
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	3 cut(s)	967, 1071, 1971
XbaI	TCTAGA	1 cut(s)	1744
XceI	RCATGY	4 cut(s)	340, 490, 1544, 2266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	971, 1187
XmnI	GAANNNNTTC	2 cut(s)	720, 1806
XspI	CTAG	9 cut(s)	23, 564, 767, 1218, 1619, 1745, 1862, 1925, 2235
ZraI	GACGTC	1 cut(s)	1840
ZrmI	AGTACT	2 cut(s)	1175, 2168
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.