Helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G46960 AT3G46960 AT3G46960 |
| fragaria_vesca | FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 |
| malus_domestica | MD03G1077900.v1.1 MD11G1082500.v1.1 |
| prunus_persica | Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 |
| pyrus_communis | pycom03g06210 pycom11g07060 |
| rosa_chinensis | RchiOBHm_Chr5g0068091 |
| rosa_laevigata | RLG00000035954 |
| rosa_multiflora | Rmu_sc0000435.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00012520 Rroxscaffold_1G00013260 |
| rosa_rugosa | Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500 |
| rosa_samantha | Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400 |
| rosa_wichuraiana | Rw5G041700 Rw5G041740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1454 |
| AarI | CACCTGC | 1 cut(s) | 382 |
| Acc36I | ACCTGC | 1 cut(s) | 382 |
| Acc65I | GGTACC | 1 cut(s) | 1498 |
| AccB1I | GGYRCC | 2 cut(s) | 1498, 2953 |
| AccI | GTMKAC | 1 cut(s) | 1205 |
| AccII | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| AccIII | TCCGGA | 2 cut(s) | 1610, 3766 |
| AclWI | GGATC | 8 cut(s) | 12, 693, 829, 1729, 1852, 2095, 3022, 3233 |
| AcoI | YGGCCR | 1 cut(s) | 61 |
| AcuI | CTGAAG | 6 cut(s) | 237, 719, 2549, 3275, 3497, 3894 |
| AcyI | GRCGYC | 1 cut(s) | 2997 |
| AdeI | CACNNNGTG | 1 cut(s) | 3573 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1081, 1819, 1908, 3047 |
| AflII | CTTAAG | 2 cut(s) | 1294, 1336 |
| AflIII | ACRYGT | 3 cut(s) | 189, 445, 2682 |
| AjiI | CACGTC | 1 cut(s) | 3915 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 573, 605, 3129, 3161 |
| Alw21I | GWGCWC | 5 cut(s) | 101, 424, 1407, 1596, 3360 |
| Alw26I | GTCTC | 7 cut(s) | 1319, 1947, 2231, 2693, 3379, 3693, 3905 |
| Alw44I | GTGCAC | 1 cut(s) | 1403 |
| AlwI | GGATC | 8 cut(s) | 12, 693, 829, 1729, 1852, 2095, 3022, 3233 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 830, 2696 |
| Ama87I | CYCGRG | 2 cut(s) | 74, 3780 |
| Aor13HI | TCCGGA | 2 cut(s) | 1610, 3766 |
| ApaLI | GTGCAC | 1 cut(s) | 1403 |
| ApeKI | GCWGC | 8 cut(s) | 17, 1124, 1667, 1703, 2596, 2744, 3056, 3935 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1100, 1132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| Asp718I | GGTACC | 1 cut(s) | 1498 |
| AspS9I | GGNCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| AsuHPI | GGTGA | 4 cut(s) | 656, 971, 1295, 2666 |
| AsuNHI | GCTAGC | 1 cut(s) | 4019 |
| AvaI | CYCGRG | 2 cut(s) | 74, 3780 |
| AvaII | GGWCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| AxyI | CCTNAGG | 1 cut(s) | 68 |
| BaeGI | GKGCMC | 3 cut(s) | 1407, 3203, 3836 |
| BalI | TGGCCA | 1 cut(s) | 63 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 2 cut(s) | 1498, 2953 |
| BanII | GRGCYC | 4 cut(s) | 30, 101, 424, 1759 |
| BauI | CACGAG | 1 cut(s) | 667 |
| BbsI | GAAGAC | 1 cut(s) | 3159 |
| Bbv12I | GWGCWC | 5 cut(s) | 101, 424, 1407, 1596, 3360 |
| BbvI | GCAGC | 8 cut(s) | 29, 1111, 1654, 1690, 2608, 2731, 3043, 3922 |
| BceAI | ACGGC | 4 cut(s) | 593, 2340, 2391, 3510 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2495, 2529 |
| BcoDI | GTCTC | 7 cut(s) | 1319, 1947, 2231, 2693, 3379, 3693, 3905 |
| BfaI | CTAG | 6 cut(s) | 150, 533, 2268, 2420, 2898, 4020 |
| BfrI | CTTAAG | 2 cut(s) | 1294, 1336 |
| BfuAI | ACCTGC | 1 cut(s) | 382 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 510, 2361 |
| BglII | AGATCT | 1 cut(s) | 3250 |
| Bme18I | GGWCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| BmeT110I | CYCGRG | 2 cut(s) | 74, 3780 |
| BmgBI | CACGTC | 1 cut(s) | 3915 |
| BmgT120I | GGNCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| BmrI | ACTGGG | 3 cut(s) | 1572, 1792, 3737 |
| BmsI | GCATC | 8 cut(s) | 1187, 1316, 1666, 1888, 2515, 2598, 3487, 3947 |
| BmtI | GCTAGC | 1 cut(s) | 4023 |
| BmuI | ACTGGG | 3 cut(s) | 1572, 1792, 3737 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3896 |
| BpiI | GAAGAC | 1 cut(s) | 3159 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3774, 3806 |
| BpmI | CTGGAG | 4 cut(s) | 1716, 1722, 2352, 3213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 603 |
| BpuEI | CTTGAG | 3 cut(s) | 408, 635, 3776 |
| BsaAI | YACGTR | 2 cut(s) | 192, 1373 |
| BsaBI | GATNNNNATC | 2 cut(s) | 826, 3270 |
| BsaHI | GRCGYC | 1 cut(s) | 2997 |
| BsaWI | WCCGGW | 3 cut(s) | 50, 1610, 3766 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 83, 113, 2808, 2838 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1081, 1819, 1908, 3047 |
| Bse118I | RCCGGY | 1 cut(s) | 139 |
| Bse21I | CCTNAGG | 1 cut(s) | 68 |
| Bse3DI | GCAATG | 3 cut(s) | 296, 1186, 2253 |
| Bse8I | GATNNNNATC | 2 cut(s) | 826, 3270 |
| BseAI | TCCGGA | 2 cut(s) | 1610, 3766 |
| BseGI | GGATG | 6 cut(s) | 403, 523, 790, 850, 3494, 3601 |
| BseJI | GATNNNNATC | 2 cut(s) | 826, 3270 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1081, 1819, 1908, 3047 |
| BseMI | GCAATG | 3 cut(s) | 296, 1186, 2253 |
| BseMII | CTCAG | 9 cut(s) | 82, 617, 879, 2025, 2489, 2588, 2688, 2703, 3704 |
| BseRI | GAGGAG | 4 cut(s) | 2684, 3368, 3569, 3785 |
| BseSI | GKGCMC | 3 cut(s) | 1407, 3203, 3836 |
| BseXI | GCAGC | 8 cut(s) | 29, 1111, 1654, 1690, 2608, 2731, 3043, 3922 |
| BseYI | CCCAGC | 2 cut(s) | 2765, 3059 |
| BsgI | GTGCAG | 4 cut(s) | 410, 767, 1380, 2379 |
| Bsh1236I | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| BshNI | GGYRCC | 2 cut(s) | 1498, 2953 |
| BsiHKAI | GWGCWC | 5 cut(s) | 101, 424, 1407, 1596, 3360 |
| BsiHKCI | CYCGRG | 2 cut(s) | 74, 3780 |
| BsiSI | CCGG | 6 cut(s) | 51, 140, 230, 1611, 3463, 3767 |
| BslFI | GGGAC | 4 cut(s) | 1121, 1568, 1579, 1794 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1081, 1819, 1908, 3047 |
| BsmAI | GTCTC | 7 cut(s) | 1319, 1947, 2231, 2693, 3379, 3693, 3905 |
| BsmBI | CGTCTC | 1 cut(s) | 3905 |
| BsmFI | GGGAC | 4 cut(s) | 1121, 1568, 1579, 1794 |
| BsmI | GAATGC | 2 cut(s) | 1679, 2648 |
| BsoBI | CYCGRG | 2 cut(s) | 74, 3780 |
| Bsp1286I | GDGCHC | 9 cut(s) | 30, 101, 424, 1407, 1596, 1759, 3203, 3360, 3836 |
| Bsp13I | TCCGGA | 2 cut(s) | 1610, 3766 |
| Bsp1407I | TGTACA | 3 cut(s) | 3341, 3708, 3963 |
| Bsp19I | CCATGG | 1 cut(s) | 3334 |
| BspCNI | CTCAG | 9 cut(s) | 81, 616, 880, 2026, 2488, 2587, 2689, 2702, 3703 |
| BspEI | TCCGGA | 2 cut(s) | 1610, 3766 |
| BspFNI | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| BspHI | TCATGA | 2 cut(s) | 1747, 2781 |
| BspMI | ACCTGC | 1 cut(s) | 382 |
| BspOI | GCTAGC | 1 cut(s) | 4023 |
| BspPI | GGATC | 8 cut(s) | 12, 693, 829, 1729, 1852, 2095, 3022, 3233 |
| BspT107I | GGYRCC | 2 cut(s) | 1498, 2953 |
| BspTI | CTTAAG | 2 cut(s) | 1294, 1336 |
| BsrDI | GCAATG | 3 cut(s) | 296, 1186, 2253 |
| BsrFI | RCCGGY | 1 cut(s) | 139 |
| BsrGI | TGTACA | 3 cut(s) | 3341, 3708, 3963 |
| BssAI | RCCGGY | 1 cut(s) | 139 |
| BssNAI | GTATAC | 1 cut(s) | 1206 |
| BssNI | GRCGYC | 1 cut(s) | 2997 |
| BssSI | CACGAG | 1 cut(s) | 667 |
| BssT1I | CCWWGG | 3 cut(s) | 285, 640, 3334 |
| Bst1107I | GTATAC | 1 cut(s) | 1206 |
| Bst2BI | CACGAG | 1 cut(s) | 667 |
| Bst4CI | ACNGT | 8 cut(s) | 59, 310, 1150, 1498, 2275, 2392, 3184, 3687 |
| Bst6I | CTCTTC | 3 cut(s) | 695, 774, 2362 |
| BstACI | GRCGYC | 1 cut(s) | 2997 |
| BstAFI | CTTAAG | 2 cut(s) | 1294, 1336 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1163, 1676, 2357, 3445 |
| BstAUI | TGTACA | 3 cut(s) | 3341, 3708, 3963 |
| BstBAI | YACGTR | 2 cut(s) | 192, 1373 |
| BstC8I | GCNNGC | 7 cut(s) | 141, 2353, 2362, 2619, 3535, 3734, 4021 |
| BstDSI | CCRYGG | 2 cut(s) | 302, 3334 |
| BstF5I | GGATG | 6 cut(s) | 403, 523, 790, 850, 3494, 3601 |
| BstFNI | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| BstMAI | GTCTC | 7 cut(s) | 1319, 1947, 2231, 2693, 3379, 3693, 3905 |
| BstNSI | RCATGY | 5 cut(s) | 1730, 2444, 2545, 2686, 3537 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3896 |
| BstSLI | GKGCMC | 3 cut(s) | 1407, 3203, 3836 |
| BstUI | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| BstV1I | GCAGC | 8 cut(s) | 29, 1111, 1654, 1690, 2608, 2731, 3043, 3922 |
| BstV2I | GAAGAC | 1 cut(s) | 3159 |
| BstX2I | RGATCY | 4 cut(s) | 4, 2087, 3238, 3250 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 669, 978, 2159, 2813 |
| BstYI | RGATCY | 4 cut(s) | 4, 2087, 3238, 3250 |
| BstZ17I | GTATAC | 1 cut(s) | 1206 |
| Bsu36I | CCTNAGG | 1 cut(s) | 68 |
| BtgI | CCRYGG | 2 cut(s) | 302, 3334 |
| BtrI | CACGTC | 1 cut(s) | 3915 |
| BtsCI | GGATG | 6 cut(s) | 403, 523, 790, 850, 3494, 3601 |
| BtsI | GCAGTG | 3 cut(s) | 254, 1594, 3434 |
| BtsIMutI | CAGTG | 8 cut(s) | 64, 254, 695, 1278, 1594, 1707, 3434, 4032 |
| BveI | ACCTGC | 1 cut(s) | 382 |
| Cac8I | GCNNGC | 7 cut(s) | 141, 2353, 2362, 2619, 3535, 3734, 4021 |
| CaiI | CAGNNNCTG | 2 cut(s) | 830, 2696 |
| CciI | TCATGA | 2 cut(s) | 1747, 2781 |
| Cfr10I | RCCGGY | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| Cfr42I | CCGCGG | 1 cut(s) | 305 |
| CseI | GACGC | 1 cut(s) | 2986 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1491, 1526, 1822, 1857 |
| DraI | TTTAAA | 1 cut(s) | 2436 |
| DraIII | CACNNNGTG | 1 cut(s) | 3573 |
| EaeI | YGGCCR | 1 cut(s) | 61 |
| Eam1104I | CTCTTC | 3 cut(s) | 695, 774, 2362 |
| EarI | CTCTTC | 3 cut(s) | 695, 774, 2362 |
| Ecl136II | GAGCTC | 2 cut(s) | 99, 422 |
| Eco130I | CCWWGG | 3 cut(s) | 285, 640, 3334 |
| Eco147I | AGGCCT | 2 cut(s) | 656, 773 |
| Eco24I | GRGCYC | 4 cut(s) | 30, 101, 424, 1759 |
| Eco47I | GGWCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| Eco53kI | GAGCTC | 2 cut(s) | 99, 422 |
| Eco57I | CTGAAG | 6 cut(s) | 237, 719, 2549, 3275, 3497, 3894 |
| Eco81I | CCTNAGG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 2 cut(s) | 74, 3780 |
| EcoICRI | GAGCTC | 2 cut(s) | 99, 422 |
| EcoRI | GAATTC | 2 cut(s) | 2564, 3544 |
| EcoT14I | CCWWGG | 3 cut(s) | 285, 640, 3334 |
| EcoT22I | ATGCAT | 4 cut(s) | 1168, 1681, 2648, 3110 |
| EcoT38I | GRGCYC | 4 cut(s) | 30, 101, 424, 1759 |
| ErhI | CCWWGG | 3 cut(s) | 285, 640, 3334 |
| Esp3I | CGTCTC | 1 cut(s) | 3905 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3129, 3161 |
| FaqI | GGGAC | 4 cut(s) | 1121, 1568, 1579, 1794 |
| FauNDI | CATATG | 1 cut(s) | 3110 |
| FblI | GTMKAC | 1 cut(s) | 1205 |
| FokI | GGATG | 6 cut(s) | 410, 530, 797, 857, 3501, 3608 |
| FriOI | GRGCYC | 4 cut(s) | 30, 101, 424, 1759 |
| FspBI | CTAG | 6 cut(s) | 150, 533, 2268, 2420, 2898, 4020 |
| GsaI | CCCAGC | 2 cut(s) | 2769, 3063 |
| GsuI | CTGGAG | 4 cut(s) | 1716, 1722, 2352, 3213 |
| HapII | CCGG | 6 cut(s) | 51, 140, 230, 1611, 3463, 3767 |
| HgaI | GACGC | 1 cut(s) | 2986 |
| Hin1I | GRCGYC | 1 cut(s) | 2997 |
| HindIII | AAGCTT | 4 cut(s) | 619, 1642, 2615, 2829 |
| HpaII | CCGG | 6 cut(s) | 51, 140, 230, 1611, 3463, 3767 |
| HphI | GGTGA | 4 cut(s) | 656, 971, 1295, 2666 |
| Hpy166II | GTNNAC | 7 cut(s) | 577, 695, 1206, 1405, 2657, 3297, 3857 |
| Hpy8I | GTNNAC | 7 cut(s) | 577, 695, 1206, 1405, 2657, 3297, 3857 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 8 cut(s) | 59, 310, 1150, 1498, 2275, 2392, 3184, 3687 |
| HpyCH4IV | ACGT | 7 cut(s) | 191, 707, 1372, 2288, 2968, 3156, 3914 |
| HpySE526I | ACGT | 7 cut(s) | 191, 707, 1372, 2288, 2968, 3156, 3914 |
| Hsp92I | GRCGYC | 1 cut(s) | 2997 |
| Kpn2I | TCCGGA | 2 cut(s) | 1610, 3766 |
| KpnI | GGTACC | 1 cut(s) | 1502 |
| KroI | GCCGGC | 1 cut(s) | 139 |
| KroNI | GCCGGC | 1 cut(s) | 141 |
| KspI | CCGCGG | 1 cut(s) | 305 |
| LmnI | GCTCC | 8 cut(s) | 104, 289, 419, 1216, 1591, 1735, 1741, 3355 |
| Lsp1109I | GCAGC | 8 cut(s) | 29, 1111, 1654, 1690, 2608, 2731, 3043, 3922 |
| LweI | GCATC | 8 cut(s) | 1187, 1316, 1666, 1888, 2515, 2598, 3487, 3947 |
| MaeI | CTAG | 6 cut(s) | 150, 533, 2268, 2420, 2898, 4020 |
| MaeII | ACGT | 7 cut(s) | 191, 707, 1372, 2288, 2968, 3156, 3914 |
| MaeIII | GTNAC | 7 cut(s) | 53, 1558, 1914, 1947, 2903, 2998, 4030 |
| MfeI | CAATTG | 4 cut(s) | 812, 1876, 2172, 3115 |
| MflI | RGATCY | 4 cut(s) | 4, 2087, 3238, 3250 |
| MhlI | GDGCHC | 9 cut(s) | 30, 101, 424, 1407, 1596, 1759, 3203, 3360, 3836 |
| MlsI | TGGCCA | 1 cut(s) | 63 |
| MluI | ACGCGT | 1 cut(s) | 445 |
| MluNI | TGGCCA | 1 cut(s) | 63 |
| MlyI | GAGTC | 6 cut(s) | 48, 352, 437, 1103, 2262, 2826 |
| MmeI | TCCRAC | 4 cut(s) | 126, 1249, 2431, 3330 |
| Mox20I | TGGCCA | 1 cut(s) | 63 |
| Mph1103I | ATGCAT | 4 cut(s) | 1168, 1681, 2648, 3110 |
| MroI | TCCGGA | 2 cut(s) | 1610, 3766 |
| MroNI | GCCGGC | 1 cut(s) | 139 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MscI | TGGCCA | 1 cut(s) | 63 |
| MslI | CAYNNNNRTG | 3 cut(s) | 667, 2345, 3884 |
| Msp20I | TGGCCA | 1 cut(s) | 63 |
| MspA1I | CMGCKG | 5 cut(s) | 304, 1139, 1997, 2765, 3193 |
| MspCI | CTTAAG | 2 cut(s) | 1294, 1336 |
| MspI | CCGG | 6 cut(s) | 51, 140, 230, 1611, 3463, 3767 |
| MunI | CAATTG | 4 cut(s) | 812, 1876, 2172, 3115 |
| Mva1269I | GAATGC | 2 cut(s) | 1679, 2648 |
| MvnI | CGCG | 5 cut(s) | 304, 447, 1356, 2077, 3921 |
| NaeI | GCCGGC | 1 cut(s) | 141 |
| NcoI | CCATGG | 1 cut(s) | 3334 |
| NdeI | CATATG | 1 cut(s) | 3110 |
| NgoMIV | GCCGGC | 1 cut(s) | 139 |
| NheI | GCTAGC | 1 cut(s) | 4019 |
| NmuCI | GTSAC | 4 cut(s) | 53, 1914, 2998, 4030 |
| NsiI | ATGCAT | 4 cut(s) | 1168, 1681, 2648, 3110 |
| NspI | RCATGY | 5 cut(s) | 1730, 2444, 2545, 2686, 3537 |
| PaeI | GCATGC | 1 cut(s) | 3537 |
| PaeR7I | CTCGAG | 1 cut(s) | 74 |
| PagI | TCATGA | 2 cut(s) | 1747, 2781 |
| PaqCI | CACCTGC | 1 cut(s) | 382 |
| PasI | CCCWGGG | 1 cut(s) | 1654 |
| PceI | AGGCCT | 2 cut(s) | 656, 773 |
| PciI | ACATGT | 1 cut(s) | 2682 |
| PctI | GAATGC | 2 cut(s) | 1679, 2648 |
| PdiI | GCCGGC | 1 cut(s) | 141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 9 cut(s) | 164, 521, 827, 936, 1978, 2047, 2471, 3271, 3787 |
| PflFI | GACNNNGTC | 1 cut(s) | 1112 |
| PleI | GAGTC | 6 cut(s) | 47, 351, 436, 1103, 2261, 2825 |
| PpsI | GAGTC | 6 cut(s) | 47, 351, 436, 1103, 2261, 2825 |
| Ppu21I | YACGTR | 2 cut(s) | 192, 1373 |
| PscI | ACATGT | 1 cut(s) | 2682 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3896 |
| PsiI | TTATAA | 1 cut(s) | 1454 |
| Psp124BI | GAGCTC | 2 cut(s) | 101, 424 |
| PspFI | CCCAGC | 2 cut(s) | 2765, 3059 |
| PspPI | GGNCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| PspXI | VCTCGAGB | 1 cut(s) | 74 |
| PstNI | CAGNNNCTG | 2 cut(s) | 830, 2696 |
| PsuI | RGATCY | 4 cut(s) | 4, 2087, 3238, 3250 |
| PsyI | GACNNNGTC | 1 cut(s) | 1112 |
| PvuII | CAGCTG | 4 cut(s) | 1139, 1997, 2765, 3193 |
| RseI | CAYNNNNRTG | 3 cut(s) | 667, 2345, 3884 |
| SacI | GAGCTC | 2 cut(s) | 101, 424 |
| SacII | CCGCGG | 1 cut(s) | 305 |
| Sau96I | GGNCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| SchI | GAGTC | 6 cut(s) | 48, 352, 437, 1103, 2262, 2826 |
| SduI | GDGCHC | 9 cut(s) | 30, 101, 424, 1407, 1596, 1759, 3203, 3360, 3836 |
| SfaNI | GCATC | 8 cut(s) | 1187, 1316, 1666, 1888, 2515, 2598, 3487, 3947 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2361 |
| Sfr274I | CTCGAG | 1 cut(s) | 74 |
| Sfr303I | CCGCGG | 1 cut(s) | 305 |
| SgrBI | CCGCGG | 1 cut(s) | 305 |
| SinI | GGWCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| SlaI | CTCGAG | 1 cut(s) | 74 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 667, 2345, 3884 |
| SmlI | CTYRAG | 6 cut(s) | 74, 423, 650, 1294, 1336, 3791 |
| SmoI | CTYRAG | 6 cut(s) | 74, 423, 650, 1294, 1336, 3791 |
| SphI | GCATGC | 1 cut(s) | 3537 |
| SseBI | AGGCCT | 2 cut(s) | 656, 773 |
| SspI | AATATT | 2 cut(s) | 1477, 2718 |
| SspMI | CTAG | 6 cut(s) | 150, 533, 2268, 2420, 2898, 4020 |
| SstI | GAGCTC | 2 cut(s) | 101, 424 |
| StuI | AGGCCT | 2 cut(s) | 656, 773 |
| StyI | CCWWGG | 3 cut(s) | 285, 640, 3334 |
| TaaI | ACNGT | 8 cut(s) | 59, 310, 1150, 1498, 2275, 2392, 3184, 3687 |
| TaiI | ACGT | 7 cut(s) | 194, 710, 1375, 2291, 2971, 3159, 3917 |
| TaqI | TCGA | 5 cut(s) | 75, 1422, 1759, 1934, 3087 |
| TatI | WGTACW | 5 cut(s) | 1239, 2685, 3341, 3708, 3963 |
| TauI | GCSGC | 5 cut(s) | 139, 304, 2080, 3921, 4019 |
| TfiI | GAWTC | 9 cut(s) | 164, 521, 827, 936, 1978, 2047, 2471, 3271, 3787 |
| TscAI | CASTG | 8 cut(s) | 64, 254, 702, 1285, 1601, 1714, 3441, 4039 |
| TseFI | GTSAC | 4 cut(s) | 53, 1914, 2998, 4030 |
| TseI | GCWGC | 8 cut(s) | 17, 1124, 1667, 1703, 2596, 2744, 3056, 3935 |
| Tsp45I | GTSAC | 4 cut(s) | 53, 1914, 2998, 4030 |
| TspGWI | ACGGA | 5 cut(s) | 376, 733, 1544, 1549, 2726 |
| TspRI | CASTG | 8 cut(s) | 64, 254, 702, 1285, 1601, 1714, 3441, 4039 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1112 |
| Vha464I | CTTAAG | 2 cut(s) | 1294, 1336 |
| VneI | GTGCAC | 1 cut(s) | 1403 |
| VpaK11BI | GGWCC | 6 cut(s) | 211, 455, 637, 1808, 2803, 3891 |
| XbaI | TCTAGA | 2 cut(s) | 532, 2419 |
| XceI | RCATGY | 5 cut(s) | 1730, 2444, 2545, 2686, 3537 |
| XhoI | CTCGAG | 1 cut(s) | 74 |
| XmiI | GTMKAC | 1 cut(s) | 1205 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 6 cut(s) | 150, 533, 2268, 2420, 2898, 4020 |
| Zsp2I | ATGCAT | 4 cut(s) | 1168, 1681, 2648, 3110 |