Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005110

Physical Location & Seq

Genomic Coordinates Forward (+)

52684050 .. 52686351

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0387900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGCTGTTGCGGTTAGCGTTCGTCATTGCTTTACTGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATCGGTTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGAACTATACTAATCATGTGGGCAAGAAATGTACGTTTTGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTGATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGTTGTACAGAAAAATCTTGAGGTGGGCAGGGTACTATCTGTTGATGTTTCTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

150

Amino Acids

17.56

Weight (kDa)

8.39

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46960 AT3G46960 AT3G46960
fragaria_vesca	FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880
malus_domestica	MD03G1077900.v1.1 MD11G1082500.v1.1
prunus_persica	Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1
pyrus_communis	pycom03g06210 pycom11g07060
rosa_chinensis	RchiOBHm_Chr5g0068091
rosa_laevigata	RLG00000035954
rosa_multiflora	Rmu_sc0000435.1_g000017
rosa_roxburghii	Rroxscaffold_1G00012520 Rroxscaffold_1G00013260
rosa_rugosa	Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500
rosa_samantha	Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400
rosa_wichuraiana	Rw5G041700 Rw5G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 297
AclWI	GGATC	3 cut(s)	161, 288, 301
AfaI	GTAC	3 cut(s)	271, 401, 428
AfeI	AGCGCT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	7, 184, 221, 305
AluI	AGCT	4 cut(s)	7, 184, 221, 305
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	161, 288, 301
Aor51HI	AGCGCT	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	61, 97
BamHI	GGATCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	5 cut(s)	82, 93, 166, 293, 351
BspACI	CCGC	2 cut(s)	13, 297
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	3 cut(s)	161, 288, 301
BsrDI	GCAATG	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	399
BssMI	GATC	5 cut(s)	82, 93, 166, 293, 351
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	85, 96, 169, 296, 354
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	5 cut(s)	82, 93, 166, 293, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	166, 293
BstYI	RGATCY	2 cut(s)	166, 293
BtsCI	GGATG	1 cut(s)	54
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	270, 400, 427
CviAII	CATG	2 cut(s)	254, 371
CviJI	RGCY	7 cut(s)	7, 144, 184, 221, 227, 280, 305
CviKI_1	RGCY	7 cut(s)	7, 144, 184, 221, 227, 280, 305
CviQI	GTAC	3 cut(s)	270, 400, 427
DpnI	GATC	5 cut(s)	84, 95, 168, 295, 353
DpnII	GATC	5 cut(s)	82, 93, 166, 293, 351
Eco47III	AGCGCT	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	335
FaeI	CATG	2 cut(s)	257, 374
FaiI	YATR	7 cut(s)	90, 201, 246, 255, 372, 380, 451
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	2 cut(s)	253, 370
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	128
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	257, 374
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	75, 332, 391
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	61, 97
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	5 cut(s)	151, 308, 349, 371, 412
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	182, 334
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	130, 139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	257, 374
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	82, 93, 166, 293, 351
LpnPI	CCDG	5 cut(s)	85, 164, 322, 349, 408
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	272
MalI	GATC	5 cut(s)	84, 95, 168, 295, 353
MboI	GATC	5 cut(s)	82, 93, 166, 293, 351
MflI	RGATCY	2 cut(s)	166, 293
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	84, 341
MnlI	CCTC	4 cut(s)	68, 284, 337, 408
MseI	TTAA	2 cut(s)	207, 285
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	5 cut(s)	82, 93, 166, 293, 351
NlaIII	CATG	2 cut(s)	257, 374
NlaIV	GGNNCC	1 cut(s)	295
PagI	TCATGA	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	2 cut(s)	83, 340
PpsI	GAGTC	2 cut(s)	83, 340
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	166, 293
RsaI	GTAC	3 cut(s)	271, 401, 428
RsaNI	GTAC	3 cut(s)	270, 400, 427
SaqAI	TTAA	2 cut(s)	207, 285
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	82, 93, 166, 293, 351
SchI	GAGTC	2 cut(s)	84, 341
ScrFI	CCNGG	1 cut(s)	337
SetI	ASST	8 cut(s)	9, 186, 193, 223, 275, 307, 348, 419
SfcI	CTRYAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	13, 297
StyD4I	CCNGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	275
TasI	AATT	1 cut(s)	366
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	207, 285
Tru9I	TTAA	2 cut(s)	207, 285
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 359, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.