AT3G47600
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009059
Physical Location & Seq
Reverse (-)
17539289 .. 17541307
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47600.1

Sequence Viewer

Length: 1002 bp
ATGGGAAGACCACCATGCTGTGACAAGATTGGAGTGAAGAAAGGACCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTGCCTACTCACACAGGTTTGAGGAGATGTAGCAAAAGCTGTAGATTGAGGTGGACTAATTATCTTCGACCTGGGATCAAGCGTGGAAATTTCACCGAGCATGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGCATCATATCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAAAAGCTCAAGAAGATGAATGATTCTTGTGATAGTACTATCAACAATGGCCTTGATAATAAAGACTTCTCCATATCAAACAAAAACACTACCTCACATCAAAGCAGCAACTCCAGTAAAGGTCAATGGGAGAGAAGGCTTCAGACAGATATCAACATGGCTAAACAAGCTCTTTGTGATGCCTTGTCTATTGACAAACCACAAAACCCAACTAATTTTTCTATTCCCGATCTTGGTTATGGTCCATCATCTTCTTCGTCCTCTACCACCACCACCACCACCACCACGAGAAACACTAATCCATACCCATCTGGGGTCTATGCTTCAAGTGCTGAGAACATTGCTCGTTTGCTTCAGAATTTTATGAAAGACACACCAAAGACCTCGGTGCCCTTGCCGGTTGCAGCCACCGAGATGGCTATCACCACGGCAGCTTCGAGCCCTAGCACAACCGAAGGAGACGGAGAAGGGATTGACCATTCTTTGTTCAGCTTCAACTCCATAGATGAAGCTGAAGAGAAGCCTAAACTAATAGACCATGACATTAATGGTCTAATTACACAAGGCTCTCTTTCTTTGTTCGAGAAATGGCTCTTTGATGAGCAAAGCCACGATATGATCATCAATAACATGTCACTAGAGGGTCAGGAAGTGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

333

Amino Acids

37.14

Weight (kDa)

6.32

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.9e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 122 2.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 2 cut(s) 205, 697
AcuI CTGAAG 3 cut(s) 464, 677, 873
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 2 cut(s) 572, 652
AflIII ACRYGT 1 cut(s) 969
AgsI TTSAA 4 cut(s) 245, 337, 666, 835
AjnI CCWGG 2 cut(s) 100, 187
AjuI GAANNNNNNNTTGG 2 cut(s) 541, 573
AloI GAACNNNNNNTCC 1 cut(s) 980
AluBI AGCT 8 cut(s) 156, 248, 272, 346, 509, 773, 831, 851
AluI AGCT 8 cut(s) 156, 248, 272, 346, 509, 773, 831, 851
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 269, 444, 743, 770
ApoI RAATTY 2 cut(s) 205, 697
AseI ATTAAT 1 cut(s) 885
AspS9I GGNCC 3 cut(s) 44, 98, 581
AsuHPI GGTGA 2 cut(s) 202, 754
AvaII GGWCC 3 cut(s) 44, 98, 581
BaeGI GKGCMC 1 cut(s) 732
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 281, 456, 755, 782
BccI CCATC 4 cut(s) 246, 592, 655, 748
BceAI ACGGC 1 cut(s) 783
BciT130I CCWGG 2 cut(s) 102, 189
BclI TGATCA 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 3 cut(s) 783, 977, 1000
BfmI CTRYAG 2 cut(s) 157, 273
BglII AGATCT 1 cut(s) 113
BisI GCNGC 4 cut(s) 270, 445, 744, 771
BlsI GCNGC 4 cut(s) 271, 446, 745, 772
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 3 cut(s) 44, 98, 581
BmgT120I GGNCC 3 cut(s) 44, 98, 581
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 2 cut(s) 102, 189
BmsI GCATC 2 cut(s) 287, 508
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 2 cut(s) 130, 436
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 758
BsaJI CCNNGG 4 cut(s) 47, 188, 723, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 652
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 2 cut(s) 113, 453
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 758
BseBI CCWGG 2 cut(s) 102, 189
BseDI CCNNGG 4 cut(s) 47, 188, 723, 765
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 758
BseLI CCNNNNNNNGG 2 cut(s) 572, 652
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 2 cut(s) 113, 453
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 732
BseXI GCAGC 4 cut(s) 281, 456, 755, 782
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 727
BsiSI CCGG 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 572, 652
BsmAI GTCTC 1 cut(s) 792
BsmBI CGTCTC 1 cut(s) 792
BsnI GGCC 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 732, 782
Bsp143I GATC 4 cut(s) 113, 192, 568, 957
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 729
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 2 cut(s) 113, 453
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 4 cut(s) 47, 188, 723, 765
BssMI GATC 4 cut(s) 113, 192, 568, 957
BssSI CACGAG 1 cut(s) 625
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 625
Bst2UI CCWGG 2 cut(s) 102, 189
Bst6I CTCTTC 2 cut(s) 216, 849
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 2 cut(s) 47, 765
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 4 cut(s) 116, 195, 571, 960
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 4 cut(s) 113, 192, 568, 957
BstMWI GCNNNNNNNGC 3 cut(s) 275, 506, 668
BstNI CCWGG 2 cut(s) 102, 189
BstNSI RCATGY 1 cut(s) 973
BstSCI CCNGG 2 cut(s) 100, 187
BstSFI CTRYAG 2 cut(s) 157, 273
BstSLI GKGCMC 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 281, 456, 755, 782
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 2 cut(s) 95, 754
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 390
BtgI CCRYGG 2 cut(s) 47, 765
BtsCI GGATG 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 44, 98, 581
Csp6I GTAC 1 cut(s) 375
CviAII CATG 7 cut(s) 15, 48, 95, 218, 496, 878, 970
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 672
DpnI GATC 4 cut(s) 115, 194, 570, 959
DpnII GATC 4 cut(s) 113, 192, 568, 957
Eam1104I CTCTTC 2 cut(s) 216, 849
EarI CTCTTC 2 cut(s) 216, 849
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 782
Eco32I GATATC 2 cut(s) 67, 490
Eco47I GGWCC 3 cut(s) 44, 98, 581
Eco57I CTGAAG 3 cut(s) 464, 677, 873
EcoRII CCWGG 2 cut(s) 100, 187
EcoRV GATATC 2 cut(s) 67, 490
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 7 cut(s) 18, 51, 98, 221, 499, 881, 973
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FatI CATG 7 cut(s) 14, 47, 94, 217, 495, 877, 969
FbaI TGATCA 1 cut(s) 957
Fnu4HI GCNGC 4 cut(s) 270, 445, 744, 771
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 4 cut(s) 270, 445, 744, 771
FspBI CTAG 3 cut(s) 783, 977, 1000
GluI GCNGC 4 cut(s) 270, 445, 744, 771
GsuI CTGGAG 2 cut(s) 130, 436
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 737
Hin1II CATG 7 cut(s) 18, 51, 98, 221, 499, 881, 973
HinfI GANTC 2 cut(s) 232, 362
HpaII CCGG 1 cut(s) 737
HphI GGTGA 2 cut(s) 202, 754
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 483, 696
Hpy188III TCNNGA 5 cut(s) 290, 349, 566, 922, 986
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 468, 788, 800
HpyCH4V TGCA 1 cut(s) 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 506, 668
HpyF3I CTNAG 1 cut(s) 672
Hsp92II CATG 7 cut(s) 18, 51, 98, 221, 499, 881, 973
Ksp22I TGATCA 1 cut(s) 957
Kzo9I GATC 4 cut(s) 113, 192, 568, 957
Lsp1109I GCAGC 4 cut(s) 281, 456, 755, 782
LweI GCATC 2 cut(s) 287, 508
MaeI CTAG 3 cut(s) 783, 977, 1000
MaeIII GTNAC 2 cut(s) 20, 972
MalI GATC 4 cut(s) 115, 194, 570, 959
MboI GATC 4 cut(s) 113, 192, 568, 957
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 732, 782
MluCI AATT 5 cut(s) 175, 205, 553, 697, 894
MnlI CCTC 7 cut(s) 52, 132, 159, 442, 610, 733, 973
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 1 cut(s) 752
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 2 cut(s) 102, 189
MvaI CCWGG 2 cut(s) 102, 189
MwoI GCNNNNNNNGC 3 cut(s) 275, 506, 668
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 113, 192, 568, 957
NlaIII CATG 7 cut(s) 18, 51, 98, 221, 499, 881, 973
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 2 cut(s) 20, 972
NspI RCATGY 1 cut(s) 973
PciI ACATGT 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 773
PfeI GAWTC 2 cut(s) 232, 362
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 4 cut(s) 271, 446, 745, 772
PscI ACATGT 1 cut(s) 969
PshBI ATTAAT 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 100, 187
PspGI CCWGG 2 cut(s) 100, 187
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 3 cut(s) 44, 98, 581
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 752
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 4 cut(s) 270, 445, 744, 771
Sau3AI GATC 4 cut(s) 113, 192, 568, 957
Sau96I GGNCC 3 cut(s) 44, 98, 581
ScaI AGTACT 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 102, 189
SduI GDGCHC 2 cut(s) 732, 782
SfaNI GCATC 2 cut(s) 287, 508
SfcI CTRYAG 2 cut(s) 157, 273
SinI GGWCC 3 cut(s) 44, 98, 581
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 175, 205, 553, 697, 894
SspMI CTAG 3 cut(s) 783, 977, 1000
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 3 cut(s) 184, 776, 921
TasI AATT 5 cut(s) 175, 205, 553, 697, 894
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 2 cut(s) 232, 362
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TseFI GTSAC 2 cut(s) 20, 972
TseI GCWGC 4 cut(s) 269, 444, 743, 770
Tsp45I GTSAC 2 cut(s) 20, 972
TspDTI ATGAA 4 cut(s) 234, 371, 719, 861
TspGWI ACGGA 1 cut(s) 816
VpaK11BI GGWCC 3 cut(s) 44, 98, 581
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 2 cut(s) 205, 697
XceI RCATGY 1 cut(s) 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XspI CTAG 3 cut(s) 783, 977, 1000
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.