FvH4_5g14970
MYB Family

Myb-related protein 306-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009059
Physical Location & Seq
Reverse (-)
8477384 .. 8479918
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14970.t3

Sequence Viewer

Length: 939 bp
ATGAGATGTAGCAAGAGCTGCCGGCTCAGATGGACTAATTATCTCCGGCCGGGCATCAAACGCGGTAACTTCACCGACCATGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTGGGTAATAGATGGGCTGCCATAGCTTCCTACCTTCCTCAGAGAACAGACAATGATATTAAGAATTACTGGAACACCCACCTGAAGAAGAAGCTCAGAAAGCTTCAGACAGGTAGTGCTGAGGATGGCATTTCAGGTACTTCACAGCAGCCAATTTCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGATATCCATATGGCCAAACAAGCCCTTTGTGAGGCACTCTCCCTTGACAAACCAAGTCATGATCATCACCATGTGCCAGACTTAAAGCCCTCACTCTCCAATATTAATGCCACTACTAGTACTACTGCCACTACTAGAACTCACCAAGCATCCACATATGCGTCCAACACCGAAAACATTGCTCGATTGCTCGAAAACTGGATGAAAAATTCACCAAAAGTTCGAACAAACTCATCGGACGATCATCAATCCCATGTTCATCATCAGAATATGCTCAGCAACGGTTCATGTTCTAGTACTACCGACGGGGCGCATAGCGGGACAACTACCACGCCGGACCATCAAGACCACCAGGGTTTCGATTCCTTGTTTAGTAGCTTCAACTCCAGCACATTATCCGATAACACTTCGACTCAGTTATCAGCAGGAAATAATCATCGTCACGCTAGTACTACTACTAACAATAATAATACTAGTCTCATGATGTTCCAAGACGAAAGCAAGCCCAATTTAGAGGAGACGGTCGCGGCAGCTGCAGCAGAAGCAGCTGATCAAGTCCCTCTCACATTGCTGGAGAAGTGGCTCTTAGATGATGCTAGTGCACATCAAGCTCATGATCAAGATATCCTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

313

Amino Acids

34.8

Weight (kDa)

6.69

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 66 1.4e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 72 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 63, 830
AciI CCGC 3 cut(s) 63, 621, 830
AcoI YGGCCR 2 cut(s) 47, 315
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 2 cut(s) 203, 218
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 4 cut(s) 253, 424, 601, 754
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 2 cut(s) 273, 685
AhlI ACTAGT 2 cut(s) 419, 776
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 9 cut(s) 18, 110, 140, 208, 217, 681, 836, 851, 914
AluI AGCT 9 cut(s) 18, 110, 140, 208, 217, 681, 836, 851, 914
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 785, 815
Alw44I GTGCAC 1 cut(s) 903
AoxI GGCC 2 cut(s) 47, 315
ApaLI GTGCAC 1 cut(s) 903
ApeKI GCWGC 7 cut(s) 18, 131, 262, 833, 836, 839, 848
ApoI RAATTY 1 cut(s) 511
AseI ATTAAT 1 cut(s) 408
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 640
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 64, 362, 437, 507
AsuII TTCGAA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 907
BalI TGGCCA 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 907
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 7 cut(s) 5, 118, 274, 823, 845, 851, 860
BccI CCATC 4 cut(s) 24, 120, 233, 651
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 656
BclI TGATCA 4 cut(s) 93, 364, 853, 919
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 785, 815
BcuI ACTAGT 2 cut(s) 419, 776
BfaI CTAG 6 cut(s) 420, 438, 597, 750, 777, 900
BfmI CTRYAG 1 cut(s) 837
BisI GCNGC 8 cut(s) 19, 132, 263, 831, 834, 837, 840, 849
BlpI GCTNAGC 1 cut(s) 578
BlsI GCNGC 8 cut(s) 20, 133, 264, 832, 835, 838, 841, 850
BmcAI AGTACT 3 cut(s) 424, 601, 754
Bme1390I CCNGG 2 cut(s) 51, 656
Bme18I GGWCC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 51, 656
BmsI GCATC 3 cut(s) 63, 461, 886
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 2 cut(s) 673, 896
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 188, 506
Bse3DI GCAATG 2 cut(s) 480, 869
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 4 cut(s) 96, 244, 452, 510
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 480, 869
BseMII CTCAG 6 cut(s) 40, 167, 223, 225, 592, 731
BseNI ACTGG 2 cut(s) 188, 506
BseRI GAGGAG 2 cut(s) 98, 833
BseSI GKGCMC 1 cut(s) 907
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 7 cut(s) 5, 118, 274, 823, 845, 851, 860
Bsh1236I CGCG 2 cut(s) 63, 830
Bsh1285I CGRYCG 2 cut(s) 50, 828
BshFI GGCC 2 cut(s) 49, 317
BsiEI CGRYCG 2 cut(s) 50, 828
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 4 cut(s) 22, 46, 50, 638
BslFI GGGAC 2 cut(s) 637, 845
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 785, 815
BsmBI CGTCTC 1 cut(s) 815
BsmFI GGGAC 2 cut(s) 637, 845
BsnI GGCC 2 cut(s) 49, 317
Bsp119I TTCGAA 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 907
Bsp143I GATC 5 cut(s) 93, 364, 544, 853, 919
Bsp1720I GCTNAGC 1 cut(s) 578
BspACI CCGC 3 cut(s) 63, 621, 830
BspANI GGCC 2 cut(s) 49, 317
BspCNI CTCAG 6 cut(s) 39, 166, 222, 226, 591, 730
BspFNI CGCG 2 cut(s) 63, 830
BspHI TCATGA 3 cut(s) 361, 783, 916
BspLI GGNNCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 841
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 480, 869
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 2 cut(s) 188, 506
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 5 cut(s) 93, 364, 544, 853, 919
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 2 cut(s) 587, 826
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 23, 806
BstDEI CTNAG 7 cut(s) 26, 153, 209, 234, 578, 717, 889
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 4 cut(s) 96, 244, 452, 510
BstFNI CGCG 2 cut(s) 63, 830
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 5 cut(s) 96, 367, 547, 856, 922
BstMAI GTCTC 2 cut(s) 785, 815
BstMBI GATC 5 cut(s) 93, 364, 544, 853, 919
BstMCI CGRYCG 2 cut(s) 50, 828
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 49, 654
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 2 cut(s) 63, 830
BstV1I GCAGC 7 cut(s) 5, 118, 274, 823, 845, 851, 860
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 317
BtsCI GGATG 4 cut(s) 96, 244, 452, 510
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 23, 806
CciI TCATGA 3 cut(s) 361, 783, 916
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 453
Csp6I GTAC 4 cut(s) 252, 423, 600, 753
CviAII CATG 7 cut(s) 80, 362, 374, 557, 591, 784, 917
CviQI GTAC 4 cut(s) 252, 423, 600, 753
DdeI CTNAG 7 cut(s) 26, 153, 209, 234, 578, 717, 889
DpnI GATC 5 cut(s) 95, 366, 546, 855, 921
DpnII GATC 5 cut(s) 93, 364, 544, 853, 919
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 47, 315
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 47
Eco32I GATATC 2 cut(s) 307, 928
Eco47I GGWCC 1 cut(s) 640
Eco52I CGGCCG 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 203, 218
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 654
EcoRV GATATC 2 cut(s) 307, 928
Esp3I CGTCTC 1 cut(s) 815
FaeI CATG 7 cut(s) 83, 365, 377, 560, 594, 787, 920
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 2 cut(s) 637, 845
FatI CATG 7 cut(s) 79, 361, 373, 556, 590, 783, 916
FauI CCCGC 1 cut(s) 614
FauNDI CATATG 2 cut(s) 312, 460
FbaI TGATCA 4 cut(s) 93, 364, 853, 919
Fnu4HI GCNGC 8 cut(s) 19, 132, 263, 831, 834, 837, 840, 849
FokI GGATG 4 cut(s) 83, 251, 439, 517
Fsp4HI GCNGC 8 cut(s) 19, 132, 263, 831, 834, 837, 840, 849
FspBI CTAG 6 cut(s) 420, 438, 597, 750, 777, 900
GlaI GCGC 1 cut(s) 615
GluI GCNGC 8 cut(s) 19, 132, 263, 831, 834, 837, 840, 849
GsuI CTGGAG 2 cut(s) 673, 896
HaeIII GGCC 2 cut(s) 49, 317
HapII CCGG 4 cut(s) 22, 46, 50, 638
HgaI GACGC 1 cut(s) 453
HhaI GCGC 1 cut(s) 616
Hin1II CATG 7 cut(s) 83, 365, 377, 560, 594, 787, 920
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 665, 715
HpaII CCGG 4 cut(s) 22, 46, 50, 638
HphI GGTGA 4 cut(s) 64, 362, 437, 507
Hpy166II GTNNAC 1 cut(s) 905
Hpy188I TCNGA 7 cut(s) 29, 156, 212, 222, 541, 570, 703
Hpy188III TCNNGA 5 cut(s) 362, 647, 784, 917, 923
Hpy8I GTNNAC 1 cut(s) 905
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 2 cut(s) 158, 285
HpyCH4III ACNGT 2 cut(s) 587, 826
HpyCH4V TGCA 2 cut(s) 839, 905
HpyF3I CTNAG 7 cut(s) 26, 153, 209, 234, 578, 717, 889
Hsp92II CATG 7 cut(s) 83, 365, 377, 560, 594, 787, 920
HspAI GCGC 1 cut(s) 614
KroI GCCGGC 1 cut(s) 21
KroNI GCCGGC 1 cut(s) 23
Ksp22I TGATCA 4 cut(s) 93, 364, 853, 919
Kzo9I GATC 5 cut(s) 93, 364, 544, 853, 919
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 7 cut(s) 5, 118, 274, 823, 845, 851, 860
LweI GCATC 3 cut(s) 63, 461, 886
MaeI CTAG 6 cut(s) 420, 438, 597, 750, 777, 900
MaeIII GTNAC 2 cut(s) 65, 743
MalI GATC 5 cut(s) 95, 366, 546, 855, 921
MboI GATC 5 cut(s) 93, 364, 544, 853, 919
MboII GAAGA 4 cut(s) 100, 104, 211, 214
MhlI GDGCHC 1 cut(s) 907
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 5 cut(s) 37, 178, 267, 511, 811
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 8 cut(s) 76, 113, 162, 229, 328, 403, 811, 873
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 317
MseI TTAA 4 cut(s) 174, 386, 408, 937
MslI CAYNNNNRTG 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 317
MspA1I CMGCKG 2 cut(s) 836, 851
MspI CCGG 4 cut(s) 22, 46, 50, 638
MspR9I CCNGG 2 cut(s) 51, 656
MvaI CCWGG 1 cut(s) 656
MvnI CGCG 2 cut(s) 63, 830
NaeI GCCGGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 51
NdeI CATATG 2 cut(s) 312, 460
NdeII GATC 5 cut(s) 93, 364, 544, 853, 919
NgoMIV GCCGGC 1 cut(s) 21
NlaIII CATG 7 cut(s) 83, 365, 377, 560, 594, 787, 920
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 743
NspV TTCGAA 1 cut(s) 526
PagI TCATGA 3 cut(s) 361, 783, 916
PciSI GCTCTTC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 665
PkrI GCNGC 8 cut(s) 20, 133, 264, 832, 835, 838, 841, 850
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 640
PstI CTGCAG 1 cut(s) 841
PvuII CAGCTG 2 cut(s) 836, 851
RsaI GTAC 4 cut(s) 253, 424, 601, 754
RsaNI GTAC 4 cut(s) 252, 423, 600, 753
RseI CAYNNNNRTG 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 174, 386, 408, 937
SatI GCNGC 8 cut(s) 19, 132, 263, 831, 834, 837, 840, 849
Sau3AI GATC 5 cut(s) 93, 364, 544, 853, 919
Sau96I GGNCC 1 cut(s) 640
ScaI AGTACT 3 cut(s) 424, 601, 754
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 51, 656
SduI GDGCHC 1 cut(s) 907
SfaNI GCATC 3 cut(s) 63, 461, 886
SfcI CTRYAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 526
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 372
SpeI ACTAGT 2 cut(s) 419, 776
Sse9I AATT 5 cut(s) 37, 178, 267, 511, 811
SsiI CCGC 3 cut(s) 63, 621, 830
SspI AATATT 1 cut(s) 406
SspMI CTAG 6 cut(s) 420, 438, 597, 750, 777, 900
StyD4I CCNGG 2 cut(s) 49, 654
TaaI ACNGT 2 cut(s) 587, 826
TaqI TCGA 5 cut(s) 487, 495, 526, 663, 713
TasI AATT 5 cut(s) 37, 178, 267, 511, 811
TatI WGTACW 3 cut(s) 422, 599, 752
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 4 cut(s) 174, 386, 408, 937
Tru9I TTAA 4 cut(s) 174, 386, 408, 937
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 7 cut(s) 18, 131, 262, 833, 836, 839, 848
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 3 cut(s) 521, 551, 579
TspRI CASTG 1 cut(s) 287
VneI GTGCAC 1 cut(s) 903
VpaK11BI GGWCC 1 cut(s) 640
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 1 cut(s) 511
XspI CTAG 6 cut(s) 420, 438, 597, 750, 777, 900
ZrmI AGTACT 3 cut(s) 424, 601, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.