AT5G62470
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009059
Physical Location & Seq
Reverse (-)
25078991 .. 25081141
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62470.2

Sequence Viewer

Length: 1056 bp
ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAGGAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATCTGTCCCAACACACACAGGTTTAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTATCTTCGACCCGGTATTAAGCGTGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCATCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAATGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAAACACTAGTTCACAAAAGAACCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGCCTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATCTTCATCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTTGCTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCTACCACAACCACCACTACAAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAAGTGCTGAGAACATCGCCCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATCTCCGGTTTCAGAGACTGGACCACTCACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTTTGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGACAAGCTTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCTAATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTGATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

351

Amino Acids

39.03

Weight (kDa)

5.65

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 126 5.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1015
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 2 cut(s) 440, 832
AfiI CCNNNNNNNGG 2 cut(s) 682, 1015
AgsI TTSAA 6 cut(s) 242, 334, 725, 836, 856, 861
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 6 cut(s) 153, 343, 485, 593, 852, 897
AluI AGCT 6 cut(s) 153, 343, 485, 593, 852, 897
Alw26I GTCTC 5 cut(s) 391, 779, 814, 884, 972
AlwI GGATC 1 cut(s) 608
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 2 cut(s) 44, 495
ApeKI GCWGC 3 cut(s) 153, 266, 803
ApoI RAATTY 1 cut(s) 202
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 4 cut(s) 44, 98, 791, 937
AsuC2I CCSGG 2 cut(s) 186, 715
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 3 cut(s) 98, 791, 937
BauI CACGAG 1 cut(s) 1010
BbsI GAAGAC 4 cut(s) 13, 69, 230, 457
BbvI GCAGC 3 cut(s) 140, 278, 790
BccI CCATC 8 cut(s) 159, 255, 374, 426, 523, 625, 685, 1009
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 2 cut(s) 907, 915
BcnI CCSGG 2 cut(s) 186, 715
BcoDI GTCTC 5 cut(s) 391, 779, 814, 884, 972
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 402, 1031, 1054
BfmI CTRYAG 2 cut(s) 154, 804
BglII AGATCT 1 cut(s) 113
BisI GCNGC 3 cut(s) 154, 267, 804
BlsI GCNGC 3 cut(s) 155, 268, 805
Bme1390I CCNGG 3 cut(s) 102, 186, 715
Bme18I GGWCC 3 cut(s) 98, 791, 937
BmgT120I GGNCC 4 cut(s) 44, 98, 791, 937
BmrFI CCNGG 3 cut(s) 102, 186, 715
BmsI GCATC 1 cut(s) 284
BpiI GAAGAC 4 cut(s) 13, 69, 230, 457
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 2 cut(s) 186, 715
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 2 cut(s) 47, 747
BsaWI WCCGGW 2 cut(s) 775, 922
Bsc4I CCNNNNNNNGG 2 cut(s) 682, 1015
Bse1I ACTGG 3 cut(s) 113, 554, 793
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 47, 747
BseGI GGATG 5 cut(s) 84, 518, 573, 617, 1053
BseLI CCNNNNNNNGG 2 cut(s) 682, 1015
BseMII CTCAG 3 cut(s) 201, 693, 899
BseNI ACTGG 3 cut(s) 113, 554, 793
BseXI GCAGC 3 cut(s) 140, 278, 790
BshFI GGCC 2 cut(s) 46, 497
BsiSI CCGG 4 cut(s) 186, 715, 776, 923
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 682, 1015
BsmAI GTCTC 5 cut(s) 391, 779, 814, 884, 972
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 46, 497
Bso31I GGTCTC 1 cut(s) 972
Bsp143I GATC 5 cut(s) 113, 613, 907, 915, 943
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 2 cut(s) 46, 497
BspCNI CTCAG 3 cut(s) 202, 694, 898
BspHI TCATGA 1 cut(s) 732
BspMAI CTGCAG 2 cut(s) 158, 808
BspPI GGATC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 972
BsrI ACTGG 3 cut(s) 113, 554, 793
BssECI CCNNGG 2 cut(s) 47, 747
BssMI GATC 5 cut(s) 113, 613, 907, 915, 943
BssSI CACGAG 1 cut(s) 1010
BssT1I CCWWGG 2 cut(s) 47, 747
Bst2BI CACGAG 1 cut(s) 1010
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 3 cut(s) 213, 394, 628
BstAPI GCANNNNNTGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 210, 702, 885
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 84, 518, 573, 617, 1053
BstKTI GATC 5 cut(s) 116, 616, 910, 918, 946
BstMAI GTCTC 5 cut(s) 391, 779, 814, 884, 972
BstMBI GATC 5 cut(s) 113, 613, 907, 915, 943
BstMWI GCNNNNNNNGC 4 cut(s) 153, 272, 482, 698
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 100, 184, 713
BstSFI CTRYAG 2 cut(s) 154, 804
BstV1I GCAGC 3 cut(s) 140, 278, 790
BstV2I GAAGAC 4 cut(s) 13, 69, 230, 457
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 2 cut(s) 95, 947
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 46, 497
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 694
BtsCI GGATG 5 cut(s) 84, 518, 573, 617, 1053
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 44, 98, 791, 937
CseI GACGC 1 cut(s) 681
CviAII CATG 7 cut(s) 48, 95, 215, 472, 733, 905, 947
DdeI CTNAG 3 cut(s) 210, 702, 885
DpnI GATC 5 cut(s) 115, 615, 909, 917, 945
DpnII GATC 5 cut(s) 113, 613, 907, 915, 943
Eam1104I CTCTTC 3 cut(s) 213, 394, 628
EarI CTCTTC 3 cut(s) 213, 394, 628
Eco130I CCWWGG 2 cut(s) 47, 747
Eco147I AGGCCT 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 3 cut(s) 98, 791, 937
Eco57I CTGAAG 2 cut(s) 440, 832
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 47, 747
ErhI CCWWGG 2 cut(s) 47, 747
FaeI CATG 7 cut(s) 51, 98, 218, 475, 736, 908, 950
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 104
FatI CATG 7 cut(s) 47, 94, 214, 471, 732, 904, 946
FbaI TGATCA 2 cut(s) 907, 915
Fnu4HI GCNGC 3 cut(s) 154, 267, 804
FokI GGATG 4 cut(s) 71, 505, 560, 604
Fsp4HI GCNGC 3 cut(s) 154, 267, 804
FspBI CTAG 3 cut(s) 402, 1031, 1054
GluI GCNGC 3 cut(s) 154, 267, 804
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 46, 497
HapII CCGG 4 cut(s) 186, 715, 776, 923
HgaI GACGC 1 cut(s) 681
Hin1II CATG 7 cut(s) 51, 98, 218, 475, 736, 908, 950
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 2 cut(s) 359, 883
HpaII CCGG 4 cut(s) 186, 715, 776, 923
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 459, 784, 814
Hpy188III TCNNGA 4 cut(s) 287, 725, 733, 887
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 4 cut(s) 293, 812, 821, 1037
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4V TGCA 2 cut(s) 156, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 272, 482, 698
HpyF3I CTNAG 3 cut(s) 210, 702, 885
Hsp92II CATG 7 cut(s) 51, 98, 218, 475, 736, 908, 950
Ksp22I TGATCA 2 cut(s) 907, 915
Kzo9I GATC 5 cut(s) 113, 613, 907, 915, 943
Lsp1109I GCAGC 3 cut(s) 140, 278, 790
LweI GCATC 1 cut(s) 284
MaeI CTAG 3 cut(s) 402, 1031, 1054
MaeIII GTNAC 1 cut(s) 578
MalI GATC 5 cut(s) 115, 615, 909, 917, 945
MboI GATC 5 cut(s) 113, 613, 907, 915, 943
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 113
MluCI AATT 4 cut(s) 172, 202, 228, 856
MlyI GAGTC 1 cut(s) 877
MnlI CCTC 3 cut(s) 52, 487, 631
MseI TTAA 5 cut(s) 137, 192, 354, 468, 755
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 4 cut(s) 186, 715, 776, 923
MspR9I CCNGG 3 cut(s) 102, 186, 715
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 153, 272, 482, 698
NciI CCSGG 2 cut(s) 186, 715
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 113, 613, 907, 915, 943
NlaIII CATG 7 cut(s) 51, 98, 218, 475, 736, 908, 950
PagI TCATGA 1 cut(s) 732
PceI AGGCCT 1 cut(s) 497
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 1015
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 3 cut(s) 155, 268, 805
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 4 cut(s) 44, 98, 791, 937
PstI CTGCAG 2 cut(s) 158, 808
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 5 cut(s) 137, 192, 354, 468, 755
SatI GCNGC 3 cut(s) 154, 267, 804
Sau3AI GATC 5 cut(s) 113, 613, 907, 915, 943
Sau96I GGNCC 4 cut(s) 44, 98, 791, 937
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 3 cut(s) 102, 186, 715
SfaNI GCATC 1 cut(s) 284
SfcI CTRYAG 2 cut(s) 154, 804
SinI GGWCC 3 cut(s) 98, 791, 937
SmiMI CAYNNNNRTG 1 cut(s) 470
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 4 cut(s) 172, 202, 228, 856
SseBI AGGCCT 1 cut(s) 497
SspMI CTAG 3 cut(s) 402, 1031, 1054
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 3 cut(s) 100, 184, 713
StyI CCWWGG 2 cut(s) 47, 747
TaaI ACNGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 181
TasI AATT 4 cut(s) 172, 202, 228, 856
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 5 cut(s) 137, 192, 354, 468, 755
Tru9I TTAA 5 cut(s) 137, 192, 354, 468, 755
TscAI CASTG 1 cut(s) 805
TseI GCWGC 3 cut(s) 153, 266, 803
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 1 cut(s) 1015
VpaK11BI GGWCC 3 cut(s) 98, 791, 937
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XspI CTAG 3 cut(s) 402, 1031, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.