Rroxscaffold_3G00272100
MYB Family

Myb-related protein 306-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009059
Physical Location & Seq
Reverse (-)
64309361 .. 64311794
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272100.1

Sequence Viewer

Length: 1062 bp
ATGGGAAGGCCACCTTGCTGTGACAAAGTTGGAGTGAAAAAAGGGCCATGGACGCCGGAGGAAGACATCATCTTGGTGTCGTACATTCAAGAACACGGCCCTGGGAATTGGAGATCAGTTCCTACCAACACAGGTTTGATGAGATGCAGTAAGAGCTGCCGGCTTAGATGGACTAATTATCTCCGGCCGGGCATCAAACGCGGTAACTTCACCGACCATGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTAGGCAATAGATGGGCTGCCATAGCTTCCTACCTTCCTCAGAGAACAGACAATGATATAAAGAATTACTGGAACACCCACCTGAAGAAGAAACTCAGAAAGCTCCAGACAGGTACTGCTGAAGACGGTATTTCAGGTAATTCACAGCAGCCAATTTCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGACATTCACATGGCCAAACAAGCCCTTTGTGAGGCTCTCTCCCTTGACAAACCAAGTCATGATCATCACCATGTGCCAGACTTAAAGCCCTCACTCTCCAATATTAATGGCACTACTAGTACTACTAGACCTCACCAAGCATCCACATACGCGTCCAACACCGAAAACATTGCTCGATTGCTCGAAAACTGGATGAAAAGTTCACCAAAAGTTCGAACAAACTCCTCGGATGATCATCAAACCCAGATTCATCATCAGAATATGCTCAACAATGGTTCCAGTTCTAGTACTACCGACGGGGCACACAGTGGGACAACAACTACACCGGACCATCATGAACACCATGGTTTTGATTCCTTGTTTAGTAGCTTCAACTCATCCACATTATCCGATAATGCATCGACTCATTTATCAGCAGAAAATAATCATCGTCAAACTAGTACTACTACTAATAATAATAATACTGGCCTCATGATGTTCCAAGACGAAAGCAAGCCTGATTTAGAGGCGGCCGCGGGAGCAGCAGCAGCAGTAGATCAAGTGCCTCTCACATTGCTGGAGAAGTGGCTCTTTGATGACGCTACTGCACATCAAACTCATGATCAAGACATGCTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

353

Amino Acids

39.46

Weight (kDa)

6.74

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 2.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 201, 593, 956
AciI CCGC 4 cut(s) 201, 950, 954, 956
AcoI YGGCCR 3 cut(s) 185, 453, 951
AcuI CTGAAG 2 cut(s) 356, 393
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 2 cut(s) 514, 749
AfaI GTAC 5 cut(s) 83, 367, 562, 730, 883
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 3 cut(s) 89, 411, 814
AhlI ACTAGT 2 cut(s) 557, 878
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
AluBI AGCT 5 cut(s) 156, 248, 278, 355, 810
AluI AGCT 5 cut(s) 156, 248, 278, 355, 810
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 7 cut(s) 8, 44, 97, 185, 453, 907, 951
ApeKI GCWGC 6 cut(s) 156, 269, 400, 962, 965, 968
AseI ATTAAT 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 44, 98, 769
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 202, 500, 566, 636
AsuII TTCGAA 1 cut(s) 655
AvaII GGWCC 1 cut(s) 769
BaeGI GKGCMC 1 cut(s) 745
BalI TGGCCA 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 69, 381
BbvI GCAGC 6 cut(s) 143, 256, 412, 974, 977, 980
BccI CCATC 3 cut(s) 162, 258, 780
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 4 cut(s) 231, 502, 673, 1042
BcnI CCSGG 1 cut(s) 189
BcuI ACTAGT 2 cut(s) 557, 878
BfaI CTAG 5 cut(s) 254, 558, 567, 726, 879
BisI GCNGC 8 cut(s) 157, 270, 401, 951, 954, 963, 966, 969
BlsI GCNGC 8 cut(s) 158, 271, 402, 952, 955, 964, 967, 970
BmcAI AGTACT 3 cut(s) 562, 730, 883
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 44, 98, 769
BmiI GGNNCC 2 cut(s) 434, 718
BmrFI CCNGG 2 cut(s) 102, 189
BmsI GCATC 4 cut(s) 134, 201, 590, 848
BpiI GAAGAC 2 cut(s) 69, 381
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 2 cut(s) 341, 1019
Bpu14I TTCGAA 1 cut(s) 655
BpuMI CCSGG 1 cut(s) 189
BsaBI GATNNNNATC 2 cut(s) 233, 675
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 6 cut(s) 47, 100, 101, 666, 784, 954
BsaWI WCCGGW 1 cut(s) 766
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 4 cut(s) 326, 635, 720, 910
Bse3DI GCAATG 2 cut(s) 609, 992
Bse8I GATNNNNATC 2 cut(s) 233, 675
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 6 cut(s) 47, 100, 101, 666, 784, 954
BseGI GGATG 5 cut(s) 234, 581, 639, 676, 818
BseJI GATNNNNATC 2 cut(s) 233, 675
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 2 cut(s) 609, 992
BseMII CTCAG 2 cut(s) 305, 361
BseNI ACTGG 4 cut(s) 326, 635, 720, 910
BseRI GAGGAG 2 cut(s) 236, 655
BseSI GKGCMC 1 cut(s) 745
BseX3I CGGCCG 2 cut(s) 185, 951
BseXI GCAGC 6 cut(s) 143, 256, 412, 974, 977, 980
BsgI GTGCAG 1 cut(s) 1011
Bsh1236I CGCG 3 cut(s) 201, 593, 956
Bsh1285I CGRYCG 2 cut(s) 188, 954
BshFI GGCC 7 cut(s) 10, 46, 99, 187, 455, 909, 953
BsiEI CGRYCG 2 cut(s) 188, 954
BsiSI CCGG 5 cut(s) 56, 160, 184, 188, 767
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 7 cut(s) 10, 46, 99, 187, 455, 909, 953
Bsp119I TTCGAA 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
Bsp19I CCATGG 2 cut(s) 47, 784
BspACI CCGC 4 cut(s) 201, 950, 954, 956
BspANI GGCC 7 cut(s) 10, 46, 99, 187, 455, 909, 953
BspCNI CTCAG 2 cut(s) 304, 360
BspFNI CGCG 3 cut(s) 201, 593, 956
BspHI TCATGA 4 cut(s) 499, 775, 912, 1039
BspLI GGNNCC 2 cut(s) 434, 718
BspQI GCTCTTC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 609, 992
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 4 cut(s) 326, 635, 720, 910
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 47, 100, 101, 666, 784, 954
BssMI GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 47, 784
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 380, 749
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 161, 935
BstDEI CTNAG 3 cut(s) 164, 291, 347
BstDSI CCRYGG 3 cut(s) 47, 784, 954
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 5 cut(s) 234, 581, 639, 676, 818
BstFNI CGCG 3 cut(s) 201, 593, 956
BstKTI GATC 6 cut(s) 116, 234, 505, 676, 979, 1045
BstMBI GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
BstMCI CGRYCG 2 cut(s) 188, 954
BstMWI GCNNNNNNNGC 8 cut(s) 52, 153, 198, 275, 461, 959, 962, 968
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 100, 187
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 3 cut(s) 201, 593, 956
BstV1I GCAGC 6 cut(s) 143, 256, 412, 974, 977, 980
BstV2I GAAGAC 2 cut(s) 69, 381
BstZI CGGCCG 2 cut(s) 185, 951
BsuRI GGCC 7 cut(s) 10, 46, 99, 187, 455, 909, 953
BtgI CCRYGG 3 cut(s) 47, 784, 954
BtsCI GGATG 5 cut(s) 234, 581, 639, 676, 818
BtsIMutI CAGTG 2 cut(s) 425, 754
Cac8I GCNNGC 2 cut(s) 161, 935
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 4 cut(s) 499, 775, 912, 1039
CciNI GCGGCCGC 1 cut(s) 951
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 44, 98, 769
Cfr42I CCGCGG 1 cut(s) 957
CseI GACGC 3 cut(s) 61, 582, 1028
Csp6I GTAC 5 cut(s) 82, 366, 561, 729, 882
CviQI GTAC 5 cut(s) 82, 366, 561, 729, 882
DdeI CTNAG 3 cut(s) 164, 291, 347
DpnI GATC 6 cut(s) 115, 233, 504, 675, 978, 1044
DpnII GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
DraIII CACNNNGTG 2 cut(s) 514, 749
EaeI YGGCCR 3 cut(s) 185, 453, 951
EagI CGGCCG 2 cut(s) 185, 951
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 185, 951
Eco130I CCWWGG 2 cut(s) 47, 784
Eco47I GGWCC 1 cut(s) 769
Eco52I CGGCCG 2 cut(s) 185, 951
Eco57I CTGAAG 2 cut(s) 356, 393
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 47, 784
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 2 cut(s) 47, 784
FalI AAGNNNNNCTT 3 cut(s) 30, 995, 1027
FaqI GGGAC 1 cut(s) 766
FauI CCCGC 1 cut(s) 949
FbaI TGATCA 4 cut(s) 231, 502, 673, 1042
Fnu4HI GCNGC 8 cut(s) 157, 270, 401, 951, 954, 963, 966, 969
FokI GGATG 5 cut(s) 221, 568, 646, 683, 805
Fsp4HI GCNGC 8 cut(s) 157, 270, 401, 951, 954, 963, 966, 969
FspBI CTAG 5 cut(s) 254, 558, 567, 726, 879
GluI GCNGC 8 cut(s) 157, 270, 401, 951, 954, 963, 966, 969
GsuI CTGGAG 2 cut(s) 341, 1019
HaeIII GGCC 7 cut(s) 10, 46, 99, 187, 455, 909, 953
HapII CCGG 5 cut(s) 56, 160, 184, 188, 767
HgaI GACGC 3 cut(s) 61, 582, 1028
Hin1I GRCGYC 1 cut(s) 53
HinfI GANTC 3 cut(s) 688, 794, 844
HpaII CCGG 5 cut(s) 56, 160, 184, 188, 767
HphI GGTGA 4 cut(s) 202, 500, 566, 636
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 5 cut(s) 294, 350, 670, 699, 832
Hpy188III TCNNGA 7 cut(s) 89, 358, 500, 776, 913, 1040, 1046
Hpy8I GTNNAC 1 cut(s) 644
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 2 cut(s) 296, 423
HpyCH4III ACNGT 2 cut(s) 380, 749
HpyCH4V TGCA 3 cut(s) 147, 839, 1028
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 153, 198, 275, 461, 959, 962, 968
HpyF3I CTNAG 3 cut(s) 164, 291, 347
Hsp92I GRCGYC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 4 cut(s) 231, 502, 673, 1042
KspI CCGCGG 1 cut(s) 957
Kzo9I GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 3 cut(s) 360, 438, 959
Lsp1109I GCAGC 6 cut(s) 143, 256, 412, 974, 977, 980
LweI GCATC 4 cut(s) 134, 201, 590, 848
MaeI CTAG 5 cut(s) 254, 558, 567, 726, 879
MaeIII GTNAC 2 cut(s) 20, 203
MalI GATC 6 cut(s) 115, 233, 504, 675, 978, 1044
MboI GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
MboII GAAGA 6 cut(s) 74, 238, 242, 349, 352, 386
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 5 cut(s) 106, 175, 316, 391, 405
MluI ACGCGT 1 cut(s) 591
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 2 cut(s) 10, 621
Mox20I TGGCCA 1 cut(s) 455
Mph1103I ATGCAT 1 cut(s) 841
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 455
MseI TTAA 3 cut(s) 524, 546, 1060
MslI CAYNNNNRTG 3 cut(s) 74, 449, 510
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 5 cut(s) 56, 160, 184, 188, 767
MspR9I CCNGG 2 cut(s) 102, 189
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 3 cut(s) 201, 593, 956
MwoI GCNNNNNNNGC 8 cut(s) 52, 153, 198, 275, 461, 959, 962, 968
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 2 cut(s) 47, 784
NdeII GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
NgoMIV GCCGGC 1 cut(s) 159
NlaIV GGNNCC 2 cut(s) 434, 718
NmuCI GTSAC 1 cut(s) 20
NotI GCGGCCGC 1 cut(s) 951
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 1 cut(s) 1054
NspV TTCGAA 1 cut(s) 655
PagI TCATGA 4 cut(s) 499, 775, 912, 1039
PasI CCCWGGG 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 688, 794
PkrI GCNGC 8 cut(s) 158, 271, 402, 952, 955, 964, 967, 970
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 434, 718
PspPI GGNCC 3 cut(s) 44, 98, 769
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 5 cut(s) 83, 367, 562, 730, 883
RsaNI GTAC 5 cut(s) 82, 366, 561, 729, 882
RseI CAYNNNNRTG 3 cut(s) 74, 449, 510
SacII CCGCGG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 524, 546, 1060
SatI GCNGC 8 cut(s) 157, 270, 401, 951, 954, 963, 966, 969
Sau3AI GATC 6 cut(s) 113, 231, 502, 673, 976, 1042
Sau96I GGNCC 3 cut(s) 44, 98, 769
ScaI AGTACT 3 cut(s) 562, 730, 883
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 2 cut(s) 102, 189
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 4 cut(s) 134, 201, 590, 848
Sfr303I CCGCGG 1 cut(s) 957
SfuI TTCGAA 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 957
SinI GGWCC 1 cut(s) 769
SmiMI CAYNNNNRTG 3 cut(s) 74, 449, 510
SpeI ACTAGT 2 cut(s) 557, 878
Sse9I AATT 5 cut(s) 106, 175, 316, 391, 405
SsiI CCGC 4 cut(s) 201, 950, 954, 956
SspI AATATT 1 cut(s) 544
SspMI CTAG 5 cut(s) 254, 558, 567, 726, 879
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 2 cut(s) 47, 784
TaaI ACNGT 2 cut(s) 380, 749
TaqI TCGA 4 cut(s) 616, 624, 655, 842
TasI AATT 5 cut(s) 106, 175, 316, 391, 405
TatI WGTACW 3 cut(s) 560, 728, 881
TauI GCSGC 2 cut(s) 953, 956
TfiI GAWTC 2 cut(s) 688, 794
Tru1I TTAA 3 cut(s) 524, 546, 1060
Tru9I TTAA 3 cut(s) 524, 546, 1060
TscAI CASTG 2 cut(s) 425, 754
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 6 cut(s) 156, 269, 400, 962, 965, 968
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 650, 680, 792
TspRI CASTG 2 cut(s) 425, 754
VpaK11BI GGWCC 1 cut(s) 769
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 470
XceI RCATGY 1 cut(s) 1054
XspI CTAG 5 cut(s) 254, 558, 567, 726, 879
ZrmI AGTACT 3 cut(s) 562, 730, 883
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.