pycom14g16580
MYB Family

Myb-related protein 306-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009059
Physical Location & Seq
Forward (+)
18806342 .. 18808513
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g16580.1

Sequence Viewer

Length: 1116 bp
ATGGGAAGGCCACCTTGCTGTGACAAACTCGGTGTGAAGAAGGGGCCATGGACTCCAGAGGAAGACATCATATTGGTTTCTTACATTCAAGAACGTGGTGCTGGGAATTGGAGATCAGTTCCTACTAACACTGGTTTGCTGAGATGCAGTAAGAGCTGCAGACTTAGATGGACTAATTATCTCCGCCCGGGTATCAAACGCGGTAACTTCACCGATCATGAGGAGAAGATGATAATCCATCTCCAAGCTCTTTTGGGCAATAGATGGGCAGCCATAGCTTCATACCTTCCTCAGAGAACAGACAATGACATCAAAAATTACTGGAACACTCACTTGAAAAAAAAGCTGAAAAAGCTCCAGACAGGGCTTGATGGTCATGACCATCACAACGACCAGGATGGTTTTTCAGGTGATTCACTTGATCAGCCAATCTCCAAGGGTCAGTGGGAGAGAAGGCTTCAGACAGACATCCACATGGCCAAGCAAGCTCTTTCTGAGGCTCTCTCCATTAACAAACCAAGTATTATTAGTACTAGTGCTACTACTTCTCATGATCTTCACTTGCAAGCCTTGAAGCCCTCCATTAATATTGGTAATTACAATATTAATGATAACCCTATCACAAGCACAAGACCTCACCAAGCCTCCACATACGCATCCAATACTGATAACATTGCAAAATTGCTCGAAAACTGGATGAAAAATTCGCCGAAGGTTTCCACTCATCAAACAAACGCGGATCAGACCAATGCTGATGAGATCAATTCCTTCAATAACAACAACAAAGGTGGCACTACAACTAATAGAGGTTGTTCAATGAGTACTTCTAGTGAAGGGGCGCACAGCGCAGCCACTACGCCGGATCAGGCTTTCGATTCATTGTTCAGCTTCAACTCATCCCCATCTGATGTGTCTCAGTCCATGTCAGTCGATGAGAACAAAGCAAATTTCATAGCAGATCAGACAAGCTGTCTGTTTCAGGATGAGAGCAAGCCCAATTTGGAGGGACAAGTCCCTCTCACATTGCTGGAGAAGTGGCTCTGTGATGATGCTGCACTTCATGCCCACGAAGACCTAATTAACATGTCATTCGAGAATGGTGCAGGCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

372

Amino Acids

41.22

Weight (kDa)

6.27

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.9e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 3.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 201, 737
AciI CCGC 3 cut(s) 184, 201, 737
AclWI GGATC 2 cut(s) 747, 870
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 703, 946
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 2 cut(s) 532, 823
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 6 cut(s) 89, 337, 574, 772, 816, 892
AhdI GACNNNNNGTC 1 cut(s) 969
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 8 cut(s) 156, 248, 278, 346, 355, 488, 888, 969
AluI AGCT 8 cut(s) 156, 248, 278, 346, 355, 488, 888, 969
Alw26I GTCTC 1 cut(s) 918
AlwI GGATC 2 cut(s) 747, 870
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 3 cut(s) 8, 44, 477
ApeKI GCWGC 4 cut(s) 156, 269, 848, 1052
ApoI RAATTY 2 cut(s) 703, 946
AseI ATTAAT 2 cut(s) 585, 606
AspLEI GCGC 2 cut(s) 841, 848
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 188, 189
AsuHPI GGTGA 3 cut(s) 202, 422, 629
AvaI CYCGRG 1 cut(s) 187
BalI TGGCCA 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 69, 1077
BbvI GCAGC 4 cut(s) 143, 281, 860, 1039
BccI CCATC 7 cut(s) 162, 246, 258, 365, 390, 392, 910
BcgI CGANNNNNNTGC 2 cut(s) 1082, 1116
BciT130I CCWGG 1 cut(s) 395
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 2 cut(s) 188, 189
BcoDI GTCTC 1 cut(s) 918
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 534, 828
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 157, 270, 849, 1053
BlsI GCNGC 4 cut(s) 158, 271, 850, 1054
BmcAI AGTACT 2 cut(s) 532, 823
Bme1390I CCNGG 3 cut(s) 188, 189, 395
BmeRI GACNNNNNGTC 1 cut(s) 969
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 188, 189, 395
BmsI GCATC 3 cut(s) 134, 665, 1039
BpiI GAAGAC 2 cut(s) 69, 1077
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 3 cut(s) 39, 341, 1049
BpuMI CCSGG 2 cut(s) 188, 189
BsaBI GATNNNNATC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 47, 187, 435
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bse1I ACTGG 3 cut(s) 136, 326, 698
Bse3DI GCAATG 2 cut(s) 672, 1022
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 3 cut(s) 47, 187, 435
BseGI GGATG 6 cut(s) 403, 468, 656, 702, 896, 988
BseJI GATNNNNATC 1 cut(s) 233
BseMI GCAATG 2 cut(s) 672, 1022
BseMII CTCAG 4 cut(s) 131, 305, 486, 929
BseNI ACTGG 3 cut(s) 136, 326, 698
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 143, 281, 860, 1039
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 2 cut(s) 201, 737
BshFI GGCC 3 cut(s) 10, 46, 479
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 188, 860
BslFI GGGAC 2 cut(s) 998, 1020
BsmAI GTCTC 1 cut(s) 918
BsmFI GGGAC 2 cut(s) 998, 1020
BsnI GGCC 3 cut(s) 10, 46, 479
BsoBI CYCGRG 1 cut(s) 187
Bsp143I GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 184, 201, 737
BspANI GGCC 3 cut(s) 10, 46, 479
BspCNI CTCAG 4 cut(s) 132, 304, 487, 928
BspFNI CGCG 2 cut(s) 201, 737
BspHI TCATGA 3 cut(s) 217, 376, 550
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 747, 870
BsrDI GCAATG 2 cut(s) 672, 1022
BsrI ACTGG 3 cut(s) 136, 326, 698
BssECI CCNNGG 3 cut(s) 47, 187, 435
BssMI GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
BssT1I CCWWGG 2 cut(s) 47, 435
Bst2UI CCWGG 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstC8I GCNNGC 4 cut(s) 486, 567, 992, 1105
BstDEI CTNAG 5 cut(s) 140, 164, 291, 495, 915
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 403, 468, 656, 702, 896, 988
BstFNI CGCG 2 cut(s) 201, 737
BstHHI GCGC 2 cut(s) 841, 848
BstKTI GATC 8 cut(s) 116, 217, 424, 556, 742, 762, 865, 961
BstMAI GTCTC 1 cut(s) 918
BstMBI GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
BstMWI GCNNNNNNNGC 6 cut(s) 153, 275, 352, 485, 845, 1061
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 3 cut(s) 186, 187, 393
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 2 cut(s) 201, 737
BstV1I GCAGC 4 cut(s) 143, 281, 860, 1039
BstV2I GAAGAC 2 cut(s) 69, 1077
BsuRI GGCC 3 cut(s) 10, 46, 479
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 6 cut(s) 403, 468, 656, 702, 896, 988
BtsIMutI CAGTG 2 cut(s) 129, 449
Cac8I GCNNGC 4 cut(s) 486, 567, 992, 1105
CciI TCATGA 3 cut(s) 217, 376, 550
CfoI GCGC 2 cut(s) 841, 848
Cfr13I GGNCC 1 cut(s) 44
Cfr9I CCCGGG 1 cut(s) 187
Csp6I GTAC 2 cut(s) 531, 822
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 8 cut(s) 48, 218, 377, 475, 551, 922, 1061, 1084
CviQI GTAC 2 cut(s) 531, 822
DdeI CTNAG 5 cut(s) 140, 164, 291, 495, 915
DpnI GATC 8 cut(s) 115, 216, 423, 555, 741, 761, 864, 960
DpnII GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
DriI GACNNNNNGTC 1 cut(s) 969
EaeI YGGCCR 1 cut(s) 477
Eam1105I GACNNNNNGTC 1 cut(s) 969
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 47, 435
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 2 cut(s) 47, 435
ErhI CCWWGG 2 cut(s) 47, 435
FaeI CATG 8 cut(s) 51, 221, 380, 478, 554, 925, 1064, 1087
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 998, 1020
FatI CATG 8 cut(s) 47, 217, 376, 474, 550, 921, 1060, 1083
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 157, 270, 849, 1053
FokI GGATG 6 cut(s) 410, 455, 643, 709, 883, 995
Fsp4HI GCNGC 4 cut(s) 157, 270, 849, 1053
FspBI CTAG 2 cut(s) 534, 828
GlaI GCGC 2 cut(s) 840, 847
GluI GCNGC 4 cut(s) 157, 270, 849, 1053
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 3 cut(s) 39, 341, 1049
HaeIII GGCC 3 cut(s) 10, 46, 479
HapII CCGG 2 cut(s) 188, 860
HhaI GCGC 2 cut(s) 841, 848
Hin1II CATG 8 cut(s) 51, 221, 380, 478, 554, 925, 1064, 1087
Hin6I GCGC 2 cut(s) 839, 846
HinP1I GCGC 2 cut(s) 839, 846
HinfI GANTC 3 cut(s) 52, 413, 875
HpaII CCGG 2 cut(s) 188, 860
HphI GGTGA 3 cut(s) 202, 422, 629
Hpy188I TCNGA 6 cut(s) 294, 462, 496, 744, 907, 963
Hpy188III TCNNGA 8 cut(s) 56, 89, 218, 358, 377, 551, 980, 1093
HpyAV CCTTC 6 cut(s) 34, 296, 447, 706, 778, 827
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 147, 159, 565, 677, 1055, 1103
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 275, 352, 485, 845, 1061
HpyF3I CTNAG 5 cut(s) 140, 164, 291, 495, 915
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 8 cut(s) 51, 221, 380, 478, 554, 925, 1064, 1087
HspAI GCGC 2 cut(s) 839, 846
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 4 cut(s) 143, 281, 860, 1039
LweI GCATC 3 cut(s) 134, 665, 1039
MaeI CTAG 2 cut(s) 534, 828
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 20, 203
MalI GATC 8 cut(s) 115, 216, 423, 555, 741, 761, 864, 960
MboI GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
MboII GAAGA 5 cut(s) 49, 74, 238, 548, 1082
MlsI TGGCCA 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 46
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 4 cut(s) 510, 585, 606, 1080
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 2 cut(s) 188, 860
MspR9I CCNGG 3 cut(s) 188, 189, 395
MvaI CCWGG 1 cut(s) 395
MvnI CGCG 2 cut(s) 201, 737
MwoI GCNNNNNNNGC 6 cut(s) 153, 275, 352, 485, 845, 1061
NciI CCSGG 2 cut(s) 188, 189
NcoI CCATGG 1 cut(s) 47
NdeII GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
NlaIII CATG 8 cut(s) 51, 221, 380, 478, 554, 925, 1064, 1087
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 1087
PagI TCATGA 3 cut(s) 217, 376, 550
PciI ACATGT 1 cut(s) 1083
PfeI GAWTC 2 cut(s) 413, 875
PkrI GCNGC 4 cut(s) 158, 271, 850, 1054
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PscI ACATGT 1 cut(s) 1083
PshBI ATTAAT 2 cut(s) 585, 606
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 532, 823
RsaNI GTAC 2 cut(s) 531, 822
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 4 cut(s) 510, 585, 606, 1080
SatI GCNGC 4 cut(s) 157, 270, 849, 1053
Sau3AI GATC 8 cut(s) 113, 214, 421, 553, 739, 759, 862, 958
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 2 cut(s) 532, 823
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 3 cut(s) 188, 189, 395
SfaNI GCATC 3 cut(s) 134, 665, 1039
SfcI CTRYAG 1 cut(s) 157
SmaI CCCGGG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 533
SsiI CCGC 3 cut(s) 184, 201, 737
SspI AATATT 2 cut(s) 589, 604
SspMI CTAG 2 cut(s) 534, 828
StyD4I CCNGG 3 cut(s) 186, 187, 393
StyI CCWWGG 2 cut(s) 47, 435
TaiI ACGT 1 cut(s) 97
TaqI TCGA 4 cut(s) 687, 873, 930, 1092
TatI WGTACW 2 cut(s) 530, 821
TfiI GAWTC 2 cut(s) 413, 875
Tru1I TTAA 4 cut(s) 510, 585, 606, 1080
Tru9I TTAA 4 cut(s) 510, 585, 606, 1080
TscAI CASTG 2 cut(s) 136, 449
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 156, 269, 848, 1052
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 270, 713, 867, 940, 1049
TspMI CCCGGG 1 cut(s) 187
TspRI CASTG 2 cut(s) 136, 449
VspI ATTAAT 2 cut(s) 585, 606
XapI RAATTY 2 cut(s) 703, 946
XceI RCATGY 1 cut(s) 1087
XmaI CCCGGG 1 cut(s) 187
XspI CTAG 2 cut(s) 534, 828
ZrmI AGTACT 2 cut(s) 532, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.