RchiOBHm_Chr7g0181361
MYB Family

Myb-related protein 306-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
2979355 .. 2981670
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16175

Sequence Viewer

Length: 1065 bp
ATGGGAAGACCACCTTGCTGTGACAAAGTTGGAGTGAAAAAAGGGCCATGGACGCCGGAGGAAGACATCATCTTGGTGTCGTACATTCAAGAACACGGCCCTGGGAATTGGAGATCAGTTCCTACCAACACAGGTTTGATGAGATGCAGTAAGAGCTGCCGGCTTAGATGGACTAATTATCTCCGGCCGGGCATCAAACGCGGTAACTTCACCGACCATGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTAGGCAATAGATGGGCTGCCATAGCTTCCTACCTTCCTCAGAGAACAGACAATGATATAAAGAATTACTGGAACACCCACCTGAAGAAGAAACTCAGAAAGCTCCAGACAGGTACTGCTGAAGACGGTATTTCAGGTAATTCACAGCAGCCAATTTCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGACATTCACATGGCCAAACAAGCCCTTTGTGAGGCTCTCTCCCTTGACAAACCAAGTCATGATCATCACCATGTGCCAGACTTAAAGCCCTCACTCTCCAATATTAATGGCACTACTAGTACTACTACTAGACCTCACCAAGCATCCACATACGCGTCCAACACCGAAAACATTGCTCGATTGCTCGAAAACTGGATGAAAAGTTCACCAAAAGTTCGAACAAACTCCTCGGATGATCATCAAACCCAGATTCATCATCAGAACATGCTCAACAATGGTTCCAGTTCTAGTACTACCGACGGGGCACACAGTGGGACAACAACTACACCGGACCATCATGAACACCATGGTTTTGATTCCTTGTTTAGTAGCTTCAACTCATCCACATTATCCGATAATGCGTCGACTCATTTATCAGCAGAAAATAATCATCGTCAAACTAGTACTACTACTAATAATAATAATACTGGTCTCATGATGTTCCAAGACGAAAGCAAGCCTGATTTAGAGGCGGCCGCGGGAGCAGCAGCAGCAGTAGATCAAGTGCCTCTCACATTGCTGGAGAAGTGGCTCTTTGATGACGCTACTGCACATCAAGCTCATGATCAAGACATGCTGTTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

39.53

Weight (kDa)

6.74

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 2.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 845
AccII CGCG 3 cut(s) 201, 596, 959
AciI CCGC 4 cut(s) 201, 953, 957, 959
AcoI YGGCCR 3 cut(s) 185, 453, 954
AcuI CTGAAG 2 cut(s) 356, 393
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 2 cut(s) 514, 752
AfaI GTAC 5 cut(s) 83, 367, 562, 733, 886
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 89, 411, 817
AhlI ACTAGT 2 cut(s) 557, 881
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AloI GAACNNNNNNTCC 2 cut(s) 628, 660
AluBI AGCT 6 cut(s) 156, 248, 278, 355, 813, 1040
AluI AGCT 6 cut(s) 156, 248, 278, 355, 813, 1040
Alw26I GTCTC 1 cut(s) 917
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 5 cut(s) 44, 97, 185, 453, 954
ApeKI GCWGC 6 cut(s) 156, 269, 400, 965, 968, 971
AseI ATTAAT 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 44, 98, 772
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 202, 500, 569, 639
AsuII TTCGAA 1 cut(s) 658
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 748
BalI TGGCCA 1 cut(s) 455
BbsI GAAGAC 3 cut(s) 13, 69, 381
BbvI GCAGC 6 cut(s) 143, 256, 412, 977, 980, 983
BccI CCATC 3 cut(s) 162, 258, 783
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 4 cut(s) 231, 502, 676, 1045
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 917
BcuI ACTAGT 2 cut(s) 557, 881
BfaI CTAG 5 cut(s) 254, 558, 570, 729, 882
BisI GCNGC 8 cut(s) 157, 270, 401, 954, 957, 966, 969, 972
BlsI GCNGC 8 cut(s) 158, 271, 402, 955, 958, 967, 970, 973
BmcAI AGTACT 3 cut(s) 562, 733, 886
Bme1390I CCNGG 2 cut(s) 102, 189
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 44, 98, 772
BmiI GGNNCC 2 cut(s) 434, 721
BmrFI CCNGG 2 cut(s) 102, 189
BmsI GCATC 3 cut(s) 134, 201, 593
BpiI GAAGAC 3 cut(s) 13, 69, 381
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 2 cut(s) 341, 1022
Bpu14I TTCGAA 1 cut(s) 658
BpuMI CCSGG 1 cut(s) 189
BsaBI GATNNNNATC 2 cut(s) 233, 678
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 6 cut(s) 47, 100, 101, 669, 787, 957
BsaWI WCCGGW 1 cut(s) 769
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 4 cut(s) 326, 638, 723, 913
Bse3DI GCAATG 2 cut(s) 612, 995
Bse8I GATNNNNATC 2 cut(s) 233, 678
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 6 cut(s) 47, 100, 101, 669, 787, 957
BseGI GGATG 5 cut(s) 234, 584, 642, 679, 821
BseJI GATNNNNATC 2 cut(s) 233, 678
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 2 cut(s) 612, 995
BseMII CTCAG 2 cut(s) 305, 361
BseNI ACTGG 4 cut(s) 326, 638, 723, 913
BseRI GAGGAG 2 cut(s) 236, 658
BseSI GKGCMC 1 cut(s) 748
BseX3I CGGCCG 2 cut(s) 185, 954
BseXI GCAGC 6 cut(s) 143, 256, 412, 977, 980, 983
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 3 cut(s) 201, 596, 959
Bsh1285I CGRYCG 2 cut(s) 188, 957
BshFI GGCC 5 cut(s) 46, 99, 187, 455, 956
BsiEI CGRYCG 2 cut(s) 188, 957
BsiSI CCGG 5 cut(s) 56, 160, 184, 188, 770
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 917
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 5 cut(s) 46, 99, 187, 455, 956
Bso31I GGTCTC 1 cut(s) 917
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
Bsp19I CCATGG 2 cut(s) 47, 787
BspACI CCGC 4 cut(s) 201, 953, 957, 959
BspANI GGCC 5 cut(s) 46, 99, 187, 455, 956
BspCNI CTCAG 2 cut(s) 304, 360
BspFNI CGCG 3 cut(s) 201, 596, 959
BspHI TCATGA 4 cut(s) 499, 778, 915, 1042
BspLI GGNNCC 2 cut(s) 434, 721
BspQI GCTCTTC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 612, 995
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 4 cut(s) 326, 638, 723, 913
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 47, 100, 101, 669, 787, 957
BssMI GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 47, 787
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 380, 752
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 161, 938
BstDEI CTNAG 3 cut(s) 164, 291, 347
BstDSI CCRYGG 3 cut(s) 47, 787, 957
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 5 cut(s) 234, 584, 642, 679, 821
BstFNI CGCG 3 cut(s) 201, 596, 959
BstKTI GATC 6 cut(s) 116, 234, 505, 679, 982, 1048
BstMAI GTCTC 1 cut(s) 917
BstMBI GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
BstMCI CGRYCG 2 cut(s) 188, 957
BstMWI GCNNNNNNNGC 9 cut(s) 52, 153, 198, 275, 461, 962, 965, 971, 1037
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 2 cut(s) 709, 1057
BstSCI CCNGG 2 cut(s) 100, 187
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 3 cut(s) 201, 596, 959
BstV1I GCAGC 6 cut(s) 143, 256, 412, 977, 980, 983
BstV2I GAAGAC 3 cut(s) 13, 69, 381
BstZI CGGCCG 2 cut(s) 185, 954
BsuRI GGCC 5 cut(s) 46, 99, 187, 455, 956
BtgI CCRYGG 3 cut(s) 47, 787, 957
BtsCI GGATG 5 cut(s) 234, 584, 642, 679, 821
BtsIMutI CAGTG 2 cut(s) 425, 757
Cac8I GCNNGC 2 cut(s) 161, 938
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 4 cut(s) 499, 778, 915, 1042
CciNI GCGGCCGC 1 cut(s) 954
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 44, 98, 772
Cfr42I CCGCGG 1 cut(s) 960
CseI GACGC 4 cut(s) 61, 585, 831, 1031
Csp6I GTAC 5 cut(s) 82, 366, 561, 732, 885
CviQI GTAC 5 cut(s) 82, 366, 561, 732, 885
DdeI CTNAG 3 cut(s) 164, 291, 347
DpnI GATC 6 cut(s) 115, 233, 504, 678, 981, 1047
DpnII GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
DraIII CACNNNGTG 2 cut(s) 514, 752
EaeI YGGCCR 3 cut(s) 185, 453, 954
EagI CGGCCG 2 cut(s) 185, 954
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 185, 954
Eco130I CCWWGG 2 cut(s) 47, 787
Eco31I GGTCTC 1 cut(s) 917
Eco47I GGWCC 1 cut(s) 772
Eco52I CGGCCG 2 cut(s) 185, 954
Eco57I CTGAAG 2 cut(s) 356, 393
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 47, 787
ErhI CCWWGG 2 cut(s) 47, 787
FalI AAGNNNNNCTT 3 cut(s) 30, 998, 1030
FaqI GGGAC 1 cut(s) 769
FauI CCCGC 1 cut(s) 952
FbaI TGATCA 4 cut(s) 231, 502, 676, 1045
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 8 cut(s) 157, 270, 401, 954, 957, 966, 969, 972
FokI GGATG 5 cut(s) 221, 571, 649, 686, 808
Fsp4HI GCNGC 8 cut(s) 157, 270, 401, 954, 957, 966, 969, 972
FspBI CTAG 5 cut(s) 254, 558, 570, 729, 882
GluI GCNGC 8 cut(s) 157, 270, 401, 954, 957, 966, 969, 972
GsuI CTGGAG 2 cut(s) 341, 1022
HaeIII GGCC 5 cut(s) 46, 99, 187, 455, 956
HapII CCGG 5 cut(s) 56, 160, 184, 188, 770
HgaI GACGC 4 cut(s) 61, 585, 831, 1031
Hin1I GRCGYC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 3 cut(s) 691, 797, 847
HpaII CCGG 5 cut(s) 56, 160, 184, 188, 770
HphI GGTGA 4 cut(s) 202, 500, 569, 639
Hpy166II GTNNAC 2 cut(s) 647, 846
Hpy188I TCNGA 5 cut(s) 294, 350, 673, 702, 835
Hpy188III TCNNGA 7 cut(s) 89, 358, 500, 779, 916, 1043, 1049
Hpy8I GTNNAC 2 cut(s) 647, 846
Hpy99I CGWCG 2 cut(s) 743, 847
HpyAV CCTTC 2 cut(s) 296, 423
HpyCH4III ACNGT 2 cut(s) 380, 752
HpyCH4V TGCA 2 cut(s) 147, 1031
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 153, 198, 275, 461, 962, 965, 971, 1037
HpyF3I CTNAG 3 cut(s) 164, 291, 347
Hsp92I GRCGYC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 4 cut(s) 231, 502, 676, 1045
KspI CCGCGG 1 cut(s) 960
Kzo9I GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 3 cut(s) 360, 438, 962
Lsp1109I GCAGC 6 cut(s) 143, 256, 412, 977, 980, 983
LweI GCATC 3 cut(s) 134, 201, 593
MaeI CTAG 5 cut(s) 254, 558, 570, 729, 882
MaeIII GTNAC 2 cut(s) 20, 203
MalI GATC 6 cut(s) 115, 233, 504, 678, 981, 1047
MboI GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
MboII GAAGA 7 cut(s) 18, 74, 238, 242, 349, 352, 386
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 5 cut(s) 106, 175, 316, 391, 405
MluI ACGCGT 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 1 cut(s) 841
MmeI TCCRAC 2 cut(s) 10, 624
Mox20I TGGCCA 1 cut(s) 455
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 455
MseI TTAA 3 cut(s) 524, 546, 1063
MslI CAYNNNNRTG 3 cut(s) 74, 449, 510
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 5 cut(s) 56, 160, 184, 188, 770
MspR9I CCNGG 2 cut(s) 102, 189
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 3 cut(s) 201, 596, 959
MwoI GCNNNNNNNGC 9 cut(s) 52, 153, 198, 275, 461, 962, 965, 971, 1037
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 2 cut(s) 47, 787
NdeII GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
NgoMIV GCCGGC 1 cut(s) 159
NlaIV GGNNCC 2 cut(s) 434, 721
NmuCI GTSAC 1 cut(s) 20
NotI GCGGCCGC 1 cut(s) 954
NspI RCATGY 2 cut(s) 709, 1057
NspV TTCGAA 1 cut(s) 658
PagI TCATGA 4 cut(s) 499, 778, 915, 1042
PasI CCCWGGG 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 691, 797
PkrI GCNGC 8 cut(s) 158, 271, 402, 955, 958, 967, 970, 973
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 434, 721
PspPI GGNCC 3 cut(s) 44, 98, 772
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 5 cut(s) 83, 367, 562, 733, 886
RsaNI GTAC 5 cut(s) 82, 366, 561, 732, 885
RseI CAYNNNNRTG 3 cut(s) 74, 449, 510
SacII CCGCGG 1 cut(s) 960
SalI GTCGAC 1 cut(s) 844
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 524, 546, 1063
SatI GCNGC 8 cut(s) 157, 270, 401, 954, 957, 966, 969, 972
Sau3AI GATC 6 cut(s) 113, 231, 502, 676, 979, 1045
Sau96I GGNCC 3 cut(s) 44, 98, 772
ScaI AGTACT 3 cut(s) 562, 733, 886
SchI GAGTC 1 cut(s) 841
ScrFI CCNGG 2 cut(s) 102, 189
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 3 cut(s) 134, 201, 593
Sfr303I CCGCGG 1 cut(s) 960
SfuI TTCGAA 1 cut(s) 658
SgrBI CCGCGG 1 cut(s) 960
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 74, 449, 510
SpeI ACTAGT 2 cut(s) 557, 881
Sse9I AATT 5 cut(s) 106, 175, 316, 391, 405
SsiI CCGC 4 cut(s) 201, 953, 957, 959
SspI AATATT 1 cut(s) 544
SspMI CTAG 5 cut(s) 254, 558, 570, 729, 882
StyD4I CCNGG 2 cut(s) 100, 187
StyI CCWWGG 2 cut(s) 47, 787
TaaI ACNGT 2 cut(s) 380, 752
TaqI TCGA 4 cut(s) 619, 627, 658, 845
TasI AATT 5 cut(s) 106, 175, 316, 391, 405
TatI WGTACW 3 cut(s) 560, 731, 884
TauI GCSGC 2 cut(s) 956, 959
TfiI GAWTC 2 cut(s) 691, 797
Tru1I TTAA 3 cut(s) 524, 546, 1063
Tru9I TTAA 3 cut(s) 524, 546, 1063
TscAI CASTG 2 cut(s) 425, 757
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 6 cut(s) 156, 269, 400, 965, 968, 971
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 653, 683, 795
TspRI CASTG 2 cut(s) 425, 757
VpaK11BI GGWCC 1 cut(s) 772
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 470
XceI RCATGY 2 cut(s) 709, 1057
XmiI GTMKAC 1 cut(s) 845
XspI CTAG 5 cut(s) 254, 558, 570, 729, 882
ZrmI AGTACT 3 cut(s) 562, 733, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.