pycom06g17130
MYB Family

Myb-related protein 306-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009059
Physical Location & Seq
Forward (+)
21163323 .. 21165523
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17130.1

Sequence Viewer

Length: 1137 bp
ATGGGAAGGCCACCTTGCTGTGACAAAGTTGGTGTGAAGAAAGGGCCATGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGTCCTGGGAATTGGAGATCAGTTCCTACTAACACTGGTTTGCTGAGATGCAGTAAGAGCTGCAGACTTAGATGGACTAATTATCTCCGCCCGGGTATCAAACGCGGTAACTTCACTGATCATGAGGAGAAGATGATAATCCACCTCCAAGCTCTTCTGGGCAATAGATGGGCAGCCATAGCTTCATATCTTCCTCAGAGAACAGACAACGACATAAAAAATTACTGGAACACCCACTTGAAAAAGAAGCTGAAAAAGCTTCATGCAGGGCTTGATGGTCATGACCATCACAACCACCAGGATGGTTTTTCAGGTAATTCACATGATCAGCCAATCTCCAAGGGGCAGTGGGAGAGAAGGCTTCAGACTGATATCCACATGGCCAAGCAAGCTCTTTGTGAGGCTCTCTCCATTGACAAACCAAATGTTATTAGTACTACTACTGCTTCTCATGACCTTCACTTGCAAGACTTGAAGCCCTCCATTAATATAGGTAATTACAATATTAATGATAACCCTAGCACTAGCACTAGCACAAGGCCACACCATACCTCCACGTACGCATCCAATGCCGAAAACATTGCAAAATTGCTCGAAAACTGGATGAAAAACTCGCCAAAGGTTTCCGCTCATGAAACAAACTCGGATCAGACCAATGCTGATCAGACCAATTCCTTCAACAACAACAACAACGACAACGACAACAAAGGTGGCGCTACTGCAACTACTATAGGTCGTTCAATGAGCACTTCTAGTGAAGGGGCGCACAGCGCAACCACCACACCGGATCAGGCTTTCGATTCGTTGTTCAGCTTCAACTCATCCCCATCGGATGTGTCTCAGTCCATGTCAGTGGATGAGAACAATGCAAATTTCATAGCAGATCAGGCAAGCTGTCTGTTTCAGGATGAGAGCAAGCCCAATTTGGAGGGACAAGTCCCTCTCTCATTGCTGGAGAAGTGGCTCCTTGACGATGCTGCACCTCATGCCCACGAAGACCTAATCAACATATCATTAGAGAATGGTGCAGGCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

379

Amino Acids

41.91

Weight (kDa)

6.07

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 2.8e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 3.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 725
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 184, 201, 723
AclWI GGATC 2 cut(s) 750, 891
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 2 cut(s) 532, 656
AgsI TTSAA 6 cut(s) 89, 337, 571, 775, 837, 913
AjnI CCWGG 2 cut(s) 100, 393
AluBI AGCT 8 cut(s) 156, 248, 278, 346, 355, 488, 909, 990
AluI AGCT 8 cut(s) 156, 248, 278, 346, 355, 488, 909, 990
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 2 cut(s) 82, 939
AlwI GGATC 2 cut(s) 750, 891
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 4 cut(s) 8, 44, 477, 635
ApeKI GCWGC 3 cut(s) 156, 269, 1073
ApoI RAATTY 1 cut(s) 967
AseI ATTAAT 2 cut(s) 582, 603
AspLEI GCGC 3 cut(s) 812, 862, 869
AspS9I GGNCC 2 cut(s) 44, 98
AsuC2I CCSGG 2 cut(s) 188, 189
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 69, 1098
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 3 cut(s) 143, 281, 1060
BccI CCATC 6 cut(s) 162, 258, 365, 390, 392, 931
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 2 cut(s) 102, 395
BclI TGATCA 3 cut(s) 214, 421, 757
BcnI CCSGG 2 cut(s) 188, 189
BcoDI GTCTC 2 cut(s) 82, 939
BfaI CTAG 4 cut(s) 615, 621, 627, 849
BfmI CTRYAG 2 cut(s) 157, 825
BfoI RGCGCY 1 cut(s) 813
BisI GCNGC 3 cut(s) 157, 270, 1074
BlsI GCNGC 3 cut(s) 158, 271, 1075
BmcAI AGTACT 1 cut(s) 532
Bme1390I CCNGG 4 cut(s) 102, 188, 189, 395
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 44, 98
BmiI GGNNCC 1 cut(s) 1061
BmrFI CCNGG 4 cut(s) 102, 188, 189, 395
BmsI GCATC 3 cut(s) 134, 668, 1060
BpiI GAAGAC 2 cut(s) 69, 1098
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 2 cut(s) 39, 1070
BpuMI CCSGG 2 cut(s) 188, 189
BsaAI YACGTR 1 cut(s) 654
BsaBI GATNNNNATC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 47, 101, 187, 435
BsaWI WCCGGW 1 cut(s) 880
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse1I ACTGG 3 cut(s) 136, 326, 701
Bse3DI GCAATG 2 cut(s) 675, 1043
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 2 cut(s) 102, 395
BseDI CCNNGG 4 cut(s) 47, 101, 187, 435
BseGI GGATG 7 cut(s) 403, 659, 705, 917, 934, 958, 1009
BseJI GATNNNNATC 1 cut(s) 233
BseMI GCAATG 2 cut(s) 675, 1043
BseMII CTCAG 3 cut(s) 131, 305, 950
BseNI ACTGG 3 cut(s) 136, 326, 701
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 143, 281, 1060
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 4 cut(s) 10, 46, 479, 637
BsiHKAI GWGCWC 1 cut(s) 845
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 188, 881
BsiWI CGTACG 1 cut(s) 654
BslFI GGGAC 2 cut(s) 1019, 1041
BsmAI GTCTC 2 cut(s) 82, 939
BsmFI GGGAC 2 cut(s) 1019, 1041
BsnI GGCC 4 cut(s) 10, 46, 479, 637
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 845
Bsp143I GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 184, 201, 723
BspANI GGCC 4 cut(s) 10, 46, 479, 637
BspCNI CTCAG 3 cut(s) 132, 304, 949
BspFNI CGCG 1 cut(s) 201
BspHI TCATGA 4 cut(s) 217, 376, 547, 727
BspLI GGNNCC 1 cut(s) 1061
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 750, 891
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 675, 1043
BsrI ACTGG 3 cut(s) 136, 326, 701
BssECI CCNNGG 4 cut(s) 47, 101, 187, 435
BssMI GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
BssT1I CCWWGG 2 cut(s) 47, 435
Bst2UI CCWGG 2 cut(s) 102, 395
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 2 cut(s) 665, 1082
BstBAI YACGTR 1 cut(s) 654
BstC8I GCNNGC 4 cut(s) 486, 988, 1013, 1126
BstDEI CTNAG 4 cut(s) 140, 164, 291, 936
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 7 cut(s) 403, 659, 705, 917, 934, 958, 1009
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 813
BstHHI GCGC 3 cut(s) 812, 862, 869
BstKTI GATC 7 cut(s) 116, 217, 424, 745, 760, 886, 982
BstMAI GTCTC 2 cut(s) 82, 939
BstMBI GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
BstMWI GCNNNNNNNGC 8 cut(s) 153, 275, 352, 485, 665, 866, 983, 1082
BstNI CCWGG 2 cut(s) 102, 395
BstSCI CCNGG 4 cut(s) 100, 186, 187, 393
BstSFI CTRYAG 2 cut(s) 157, 825
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 143, 281, 1060
BstV2I GAAGAC 2 cut(s) 69, 1098
BstXI CCANNNNNNTGG 2 cut(s) 398, 949
BsuRI GGCC 4 cut(s) 10, 46, 479, 637
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 7 cut(s) 403, 659, 705, 917, 934, 958, 1009
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 4 cut(s) 129, 210, 449, 954
Cac8I GCNNGC 4 cut(s) 486, 988, 1013, 1126
CciI TCATGA 4 cut(s) 217, 376, 547, 727
CfoI GCGC 3 cut(s) 812, 862, 869
Cfr13I GGNCC 2 cut(s) 44, 98
Cfr9I CCCGGG 1 cut(s) 187
Csp6I GTAC 2 cut(s) 531, 655
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviQI GTAC 2 cut(s) 531, 655
DdeI CTNAG 4 cut(s) 140, 164, 291, 936
DpnI GATC 7 cut(s) 115, 216, 423, 744, 759, 885, 981
DpnII GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 47, 435
Eco31I GGTCTC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 100, 393
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 2 cut(s) 47, 435
ErhI CCWWGG 2 cut(s) 47, 435
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 1019, 1041
FbaI TGATCA 3 cut(s) 214, 421, 757
Fnu4HI GCNGC 3 cut(s) 157, 270, 1074
FokI GGATG 7 cut(s) 410, 646, 712, 904, 941, 965, 1016
Fsp4HI GCNGC 3 cut(s) 157, 270, 1074
FspBI CTAG 4 cut(s) 615, 621, 627, 849
GlaI GCGC 3 cut(s) 811, 861, 868
GluI GCNGC 3 cut(s) 157, 270, 1074
GsuI CTGGAG 2 cut(s) 39, 1070
HaeII RGCGCY 1 cut(s) 813
HaeIII GGCC 4 cut(s) 10, 46, 479, 637
HapII CCGG 2 cut(s) 188, 881
HhaI GCGC 3 cut(s) 812, 862, 869
Hin6I GCGC 3 cut(s) 810, 860, 867
HinP1I GCGC 3 cut(s) 810, 860, 867
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 52, 896
HpaII CCGG 2 cut(s) 188, 881
Hpy188I TCNGA 6 cut(s) 294, 462, 742, 747, 762, 928
Hpy188III TCNNGA 7 cut(s) 56, 89, 218, 377, 548, 728, 1001
HpyAV CCTTC 4 cut(s) 447, 563, 781, 848
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 9 cut(s) 147, 159, 362, 562, 680, 818, 965, 1076, 1124
HpyF10VI GCNNNNNNNGC 8 cut(s) 153, 275, 352, 485, 665, 866, 983, 1082
HpyF3I CTNAG 4 cut(s) 140, 164, 291, 936
HpySE526I ACGT 1 cut(s) 653
HspAI GCGC 3 cut(s) 810, 860, 867
Ksp22I TGATCA 3 cut(s) 214, 421, 757
Kzo9I GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 1065
Lsp1109I GCAGC 3 cut(s) 143, 281, 1060
LweI GCATC 3 cut(s) 134, 668, 1060
MaeI CTAG 4 cut(s) 615, 621, 627, 849
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 20, 203
MalI GATC 7 cut(s) 115, 216, 423, 744, 759, 885, 981
MbiI CCGCTC 1 cut(s) 725
MboI GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
MboII GAAGA 6 cut(s) 49, 74, 238, 242, 278, 1103
MhlI GDGCHC 1 cut(s) 845
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 9 cut(s) 106, 175, 316, 412, 592, 683, 766, 967, 1018
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 46
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 582, 603
MslI CAYNNNNRTG 2 cut(s) 396, 947
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 2 cut(s) 188, 881
MspR9I CCNGG 4 cut(s) 102, 188, 189, 395
MvaI CCWGG 2 cut(s) 102, 395
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 8 cut(s) 153, 275, 352, 485, 665, 866, 983, 1082
NciI CCSGG 2 cut(s) 188, 189
NcoI CCATGG 1 cut(s) 47
NdeII GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
NlaIV GGNNCC 1 cut(s) 1061
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 4 cut(s) 217, 376, 547, 727
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 896
Pfl23II CGTACG 1 cut(s) 654
PkrI GCNGC 3 cut(s) 158, 271, 1075
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 654
PshBI ATTAAT 2 cut(s) 582, 603
Psp6I CCWGG 2 cut(s) 100, 393
PspGI CCWGG 2 cut(s) 100, 393
PspLI CGTACG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 1061
PspPI GGNCC 2 cut(s) 44, 98
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 2 cut(s) 532, 656
RsaNI GTAC 2 cut(s) 531, 655
RseI CAYNNNNRTG 2 cut(s) 396, 947
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 582, 603
SatI GCNGC 3 cut(s) 157, 270, 1074
Sau3AI GATC 7 cut(s) 113, 214, 421, 742, 757, 883, 979
Sau96I GGNCC 2 cut(s) 44, 98
ScaI AGTACT 1 cut(s) 532
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 102, 188, 189, 395
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 3 cut(s) 134, 668, 1060
SfcI CTRYAG 2 cut(s) 157, 825
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 396, 947
Sse9I AATT 9 cut(s) 106, 175, 316, 412, 592, 683, 766, 967, 1018
SsiI CCGC 3 cut(s) 184, 201, 723
SspI AATATT 1 cut(s) 601
SspMI CTAG 4 cut(s) 615, 621, 627, 849
StyD4I CCNGG 4 cut(s) 100, 186, 187, 393
StyI CCWWGG 2 cut(s) 47, 435
TaiI ACGT 1 cut(s) 656
TaqI TCGA 2 cut(s) 690, 894
TasI AATT 9 cut(s) 106, 175, 316, 412, 592, 683, 766, 967, 1018
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 2 cut(s) 582, 603
Tru9I TTAA 2 cut(s) 582, 603
TscAI CASTG 4 cut(s) 136, 217, 449, 954
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 156, 269, 1073
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 270, 347, 716, 744, 961
TspMI CCCGGG 1 cut(s) 187
TspRI CASTG 4 cut(s) 136, 217, 449, 954
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 2 cut(s) 582, 603
XapI RAATTY 1 cut(s) 967
XmaI CCCGGG 1 cut(s) 187
XspI CTAG 4 cut(s) 615, 621, 627, 849
ZrmI AGTACT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.