Rh7BG041600
MYB Family

Myb-related protein 306-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009059
Physical Location & Seq
Forward (+)
2640282 .. 2642451
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG041600.1

Sequence Viewer

Length: 930 bp
ATGAGATGCAGTAAGAGCTGCCGGCTTAGATGGACTAATTATCTCCGGCCGGGCATCAAACGCGGTAACTTCACCGACCATGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTAGGCAATAGATGGGCTGCCATAGCTTCCTACCTTCCTCAGAGAACAGACAATGATATAAAGAATTACTGGAACACCCACCTGAAGAAGAAACTCAGAAAGCTCCAGACAGGTACTGCTGAAGACGGTATTTCAGGTAATTCACAGCAGCCAATTTCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGACATTCACATGGCCAAACAAGCCCTTTGTGAGGCTCTCTCCCTTGACAAACCAAGTCATGATCATCACCATGTGCCAGACTTAAAGCCCTCACTCTCCAATATTAATGGCACTACTAGTACTACTACTAGACCTCACCAAGCATCCACATACGCGTCCAACACCGAAAACATTGCTCGATTGCTCGAAAACTGGATGAAAAGTTCACCAAAAGTTCGAACAAACTCCTCGGATGATCATCAAACCCAGATTCATCATCAGAATATGCTCAACAATGGTTCCAGTTCTAGTACTACCGACGGGGCACACAGTGGGACAACAACTACACCGGACCATCATGAACACCATGGTTTTGATTCCTTGTTTAGTAGCTTCAACTCATCCACATTATCCGATAATGCGTCGACTCATTTATCAGCAGAAAATAATCATCGTCAAACTAGTACTACTACTACTAATAATAATAACACTGGTCTCATGATGTTCCAAGACGAAAGCAAGCCTGATTTAGAGGTGGCCGCGGGAGCAGCAGCAGCAGTAGATCAAGTGCCTCTCACATTGCTGGAGAAGTGGCTCTTTGATGACGCTACTGCACATCAAGCTCATGATCAAGACATGCTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009753 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010038 GO:0010115 GO:0010166 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023051 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901419 GO:1901568 GO:1901570 GO:1901576 GO:1901700 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1904276 GO:1904278 GO:1905957 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

309

Amino Acids

34.61

Weight (kDa)

6.72

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 66 1.4e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 72 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 707
AccII CGCG 3 cut(s) 63, 458, 824
AciI CCGC 3 cut(s) 63, 822, 824
AcoI YGGCCR 3 cut(s) 47, 315, 819
AcuI CTGAAG 2 cut(s) 218, 255
AdeI CACNNNGTG 2 cut(s) 376, 614
AfaI GTAC 4 cut(s) 229, 424, 595, 748
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 273, 679
AhlI ACTAGT 2 cut(s) 419, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AloI GAACNNNNNNTCC 2 cut(s) 490, 522
AluBI AGCT 6 cut(s) 18, 110, 140, 217, 675, 905
AluI AGCT 6 cut(s) 18, 110, 140, 217, 675, 905
Alw26I GTCTC 1 cut(s) 782
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 3 cut(s) 47, 315, 819
ApeKI GCWGC 6 cut(s) 18, 131, 262, 830, 833, 836
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 634
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 64, 362, 431, 501
AsuII TTCGAA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 610
BalI TGGCCA 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 5, 118, 274, 842, 845, 848
BccI CCATC 3 cut(s) 24, 120, 645
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BclI TGATCA 4 cut(s) 93, 364, 538, 910
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 782
BcuI ACTAGT 2 cut(s) 419, 743
BfaI CTAG 5 cut(s) 116, 420, 432, 591, 744
BisI GCNGC 7 cut(s) 19, 132, 263, 822, 831, 834, 837
BlsI GCNGC 7 cut(s) 20, 133, 264, 823, 832, 835, 838
BmcAI AGTACT 3 cut(s) 424, 595, 748
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 2 cut(s) 296, 583
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 63, 455
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 2 cut(s) 203, 887
Bpu14I TTCGAA 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 2 cut(s) 95, 540
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 3 cut(s) 531, 649, 822
BsaWI WCCGGW 1 cut(s) 631
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 4 cut(s) 188, 500, 585, 778
Bse3DI GCAATG 2 cut(s) 474, 860
Bse8I GATNNNNATC 2 cut(s) 95, 540
BseDI CCNNGG 3 cut(s) 531, 649, 822
BseGI GGATG 5 cut(s) 96, 446, 504, 541, 683
BseJI GATNNNNATC 2 cut(s) 95, 540
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 474, 860
BseMII CTCAG 2 cut(s) 167, 223
BseNI ACTGG 4 cut(s) 188, 500, 585, 778
BseRI GAGGAG 2 cut(s) 98, 520
BseSI GKGCMC 1 cut(s) 610
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 6 cut(s) 5, 118, 274, 842, 845, 848
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 3 cut(s) 63, 458, 824
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 49, 317, 821
BsiEI CGRYCG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 22, 46, 50, 632
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 3 cut(s) 49, 317, 821
Bso31I GGTCTC 1 cut(s) 782
Bsp119I TTCGAA 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 93, 364, 538, 844, 910
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 3 cut(s) 63, 822, 824
BspANI GGCC 3 cut(s) 49, 317, 821
BspCNI CTCAG 2 cut(s) 166, 222
BspFNI CGCG 3 cut(s) 63, 458, 824
BspHI TCATGA 4 cut(s) 361, 640, 780, 907
BspLI GGNNCC 2 cut(s) 296, 583
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 2 cut(s) 474, 860
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 4 cut(s) 188, 500, 585, 778
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 531, 649, 822
BssMI GATC 5 cut(s) 93, 364, 538, 844, 910
BssT1I CCWWGG 1 cut(s) 649
Bst4CI ACNGT 2 cut(s) 242, 614
Bst6I CTCTTC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 23, 803
BstDEI CTNAG 3 cut(s) 26, 153, 209
BstDSI CCRYGG 2 cut(s) 649, 822
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 5 cut(s) 96, 446, 504, 541, 683
BstFNI CGCG 3 cut(s) 63, 458, 824
BstKTI GATC 5 cut(s) 96, 367, 541, 847, 913
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 5 cut(s) 93, 364, 538, 844, 910
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 8 cut(s) 15, 60, 137, 323, 827, 830, 836, 902
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 3 cut(s) 63, 458, 824
BstV1I GCAGC 6 cut(s) 5, 118, 274, 842, 845, 848
BstV2I GAAGAC 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 3 cut(s) 49, 317, 821
BtgI CCRYGG 2 cut(s) 649, 822
BtsCI GGATG 5 cut(s) 96, 446, 504, 541, 683
BtsIMutI CAGTG 3 cut(s) 287, 619, 771
Cac8I GCNNGC 2 cut(s) 23, 803
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 4 cut(s) 361, 640, 780, 907
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 634
Cfr42I CCGCGG 1 cut(s) 825
CseI GACGC 3 cut(s) 447, 693, 896
Csp6I GTAC 4 cut(s) 228, 423, 594, 747
CviAII CATG 9 cut(s) 80, 313, 362, 374, 641, 650, 781, 908, 919
CviQI GTAC 4 cut(s) 228, 423, 594, 747
DdeI CTNAG 3 cut(s) 26, 153, 209
DpnI GATC 5 cut(s) 95, 366, 540, 846, 912
DpnII GATC 5 cut(s) 93, 364, 538, 844, 910
DraIII CACNNNGTG 2 cut(s) 376, 614
EaeI YGGCCR 3 cut(s) 47, 315, 819
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 634
Eco52I CGGCCG 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 218, 255
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 9 cut(s) 83, 316, 365, 377, 644, 653, 784, 911, 922
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 631
FatI CATG 9 cut(s) 79, 312, 361, 373, 640, 649, 780, 907, 918
FauI CCCGC 1 cut(s) 817
FbaI TGATCA 4 cut(s) 93, 364, 538, 910
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 7 cut(s) 19, 132, 263, 822, 831, 834, 837
FokI GGATG 5 cut(s) 83, 433, 511, 548, 670
Fsp4HI GCNGC 7 cut(s) 19, 132, 263, 822, 831, 834, 837
FspBI CTAG 5 cut(s) 116, 420, 432, 591, 744
GluI GCNGC 7 cut(s) 19, 132, 263, 822, 831, 834, 837
GsuI CTGGAG 2 cut(s) 203, 887
HaeIII GGCC 3 cut(s) 49, 317, 821
HapII CCGG 4 cut(s) 22, 46, 50, 632
HgaI GACGC 3 cut(s) 447, 693, 896
Hin1II CATG 9 cut(s) 83, 316, 365, 377, 644, 653, 784, 911, 922
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 3 cut(s) 553, 659, 709
HpaII CCGG 4 cut(s) 22, 46, 50, 632
HphI GGTGA 4 cut(s) 64, 362, 431, 501
Hpy166II GTNNAC 2 cut(s) 509, 708
Hpy188I TCNGA 5 cut(s) 156, 212, 535, 564, 697
Hpy188III TCNNGA 6 cut(s) 220, 362, 641, 781, 908, 914
Hpy8I GTNNAC 2 cut(s) 509, 708
Hpy99I CGWCG 2 cut(s) 605, 709
HpyAV CCTTC 2 cut(s) 158, 285
HpyCH4III ACNGT 2 cut(s) 242, 614
HpyCH4V TGCA 2 cut(s) 9, 896
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 60, 137, 323, 827, 830, 836, 902
HpyF3I CTNAG 3 cut(s) 26, 153, 209
Hsp92II CATG 9 cut(s) 83, 316, 365, 377, 644, 653, 784, 911, 922
KroI GCCGGC 1 cut(s) 21
KroNI GCCGGC 1 cut(s) 23
Ksp22I TGATCA 4 cut(s) 93, 364, 538, 910
KspI CCGCGG 1 cut(s) 825
Kzo9I GATC 5 cut(s) 93, 364, 538, 844, 910
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 3 cut(s) 222, 300, 827
Lsp1109I GCAGC 6 cut(s) 5, 118, 274, 842, 845, 848
LweI GCATC 2 cut(s) 63, 455
MaeI CTAG 5 cut(s) 116, 420, 432, 591, 744
MaeIII GTNAC 1 cut(s) 65
MalI GATC 5 cut(s) 95, 366, 540, 846, 912
MboI GATC 5 cut(s) 93, 364, 538, 844, 910
MboII GAAGA 5 cut(s) 100, 104, 211, 214, 248
MhlI GDGCHC 1 cut(s) 610
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 4 cut(s) 37, 178, 253, 267
MluI ACGCGT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 703
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 9 cut(s) 76, 113, 162, 328, 403, 447, 541, 808, 864
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 317
MseI TTAA 3 cut(s) 386, 408, 928
MslI CAYNNNNRTG 2 cut(s) 311, 372
Msp20I TGGCCA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 4 cut(s) 22, 46, 50, 632
MspR9I CCNGG 1 cut(s) 51
MvnI CGCG 3 cut(s) 63, 458, 824
MwoI GCNNNNNNNGC 8 cut(s) 15, 60, 137, 323, 827, 830, 836, 902
NaeI GCCGGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 649
NdeII GATC 5 cut(s) 93, 364, 538, 844, 910
NgoMIV GCCGGC 1 cut(s) 21
NlaIII CATG 9 cut(s) 83, 316, 365, 377, 644, 653, 784, 911, 922
NlaIV GGNNCC 2 cut(s) 296, 583
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 520
PagI TCATGA 4 cut(s) 361, 640, 780, 907
PciSI GCTCTTC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 553, 659
PkrI GCNGC 7 cut(s) 20, 133, 264, 823, 832, 835, 838
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PshBI ATTAAT 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 296, 583
PspPI GGNCC 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 230
RsaI GTAC 4 cut(s) 229, 424, 595, 748
RsaNI GTAC 4 cut(s) 228, 423, 594, 747
RseI CAYNNNNRTG 2 cut(s) 311, 372
SacII CCGCGG 1 cut(s) 825
SalI GTCGAC 1 cut(s) 706
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 386, 408, 928
SatI GCNGC 7 cut(s) 19, 132, 263, 822, 831, 834, 837
Sau3AI GATC 5 cut(s) 93, 364, 538, 844, 910
Sau96I GGNCC 1 cut(s) 634
ScaI AGTACT 3 cut(s) 424, 595, 748
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 63, 455
Sfr303I CCGCGG 1 cut(s) 825
SfuI TTCGAA 1 cut(s) 520
SgrBI CCGCGG 1 cut(s) 825
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 2 cut(s) 311, 372
SpeI ACTAGT 2 cut(s) 419, 743
Sse9I AATT 4 cut(s) 37, 178, 253, 267
SsiI CCGC 3 cut(s) 63, 822, 824
SspI AATATT 1 cut(s) 406
SspMI CTAG 5 cut(s) 116, 420, 432, 591, 744
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 242, 614
TaqI TCGA 4 cut(s) 481, 489, 520, 707
TasI AATT 4 cut(s) 37, 178, 253, 267
TatI WGTACW 3 cut(s) 422, 593, 746
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 2 cut(s) 553, 659
Tru1I TTAA 3 cut(s) 386, 408, 928
Tru9I TTAA 3 cut(s) 386, 408, 928
TscAI CASTG 3 cut(s) 287, 619, 778
TseI GCWGC 6 cut(s) 18, 131, 262, 830, 833, 836
TspDTI ATGAA 3 cut(s) 515, 545, 657
TspRI CASTG 3 cut(s) 287, 619, 778
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 332
XceI RCATGY 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 707
XspI CTAG 5 cut(s) 116, 420, 432, 591, 744
ZrmI AGTACT 3 cut(s) 424, 595, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.