Rh7CG043900
MYB Family

Myb-related protein 306-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
2929839 .. 2965338
35500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG043900.1

Sequence Viewer

Length: 1158 bp
ATGGGAAGACCACCTTGCTGTGACAAAGTTGGAGTGAAAAAAGGGCCATGGACGCCGGAGGAAGACATCATCTTGGTGTCGTACATTCAAGAACACGGCCCTGGGAATTGGAGATCAGTTCCTACCAACACAGGTTTGATGAGATGCAGTAAGAGCTGCCGGCTTAGGTGGACTAATTATCTCCGGCCGGGCATCAAACGCGGTAACTTCACCGACCATGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTAGGCAATAGATGGGCTGCCATAGCTTCCTACCTTCCTCAGAGAACAGACAATGATATAAAGAATTACTGGAACACCCACCTGAAGAAGAAACTCAGAAAGCTCCAGACAGGTACTGCTGAAGACGGTATTTCAGGTAATTCACAGCAGCCAATTTCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGACATTCACATGGCCAAACAAGCCCTTTGTGAGGCTCTCTCCCTTGACAAACCAAGTCATGATCATCACCATGTGCCAGACTTAAAGCCCTCACTCTCCAATATTAATGGCACTACTAGTACTACTACTAGACCTCACCAAGCATCCACATACGCGTCCAACACCGAAAACATTGCTCGATTGCTCGAAAACTGGATGAAAAGTTCACCAAAAGATGGCTTTGCTCTACATCACCAGCAAATAATCAATCACCAGCTAACTGGAGACTTATCTACCAGTTCCAATAATTTTCCAACAGATGGAAAACAAAGACAAGTAACAATCAAGCTGCATGATGAAAAACAAAACTTGGGGTCTTTAAAACTTCGAGTCATTGACAATGAAATTGAGTATGGCTCATGGCTTGATCCGAAGAAATTGATGAAGAAACAGCAAGTGGTAGTCAGAAGAGATGGGTCGTCCCGGAGGAGCTCAAGCAGTACTTCATCTTCAATGGTTAGAACTGTGAGGTATGGGGAGTGCCAGAGGAATCACGCTGCAAATATCGGAGGGTACGCGGTGGATGGATGCAGAGAATTCATGGCAAGTGGGCAGGAGGGCACAGCGGAGGCTCTGACTTGTGCTGCCTGCGGCTGCCACCGGAATTTTCACCGGAGGGAAGTGGAAACTGAGGTTGTTTGTGAGTATACTCCACCCAATAATTCTTATCAACAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

43.48

Weight (kDa)

9.23

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 3.2e-07 Myb-like DNA-binding domain
ZF-HD_dimer PF04770 316 - 368 2.7e-30 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 656, 740
AccI GTMKAC 1 cut(s) 1127
AccII CGCG 3 cut(s) 201, 596, 998
AciI CCGC 4 cut(s) 201, 998, 1046, 1071
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 2 cut(s) 185, 453
AcsI RAATTY 2 cut(s) 1016, 1084
AcuI CTGAAG 2 cut(s) 356, 393
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 5 cut(s) 83, 367, 562, 922, 995
AfiI CCNNNNNNNGG 3 cut(s) 472, 656, 740
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 89, 411, 933
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AloI GAACNNNNNNTCC 2 cut(s) 628, 660
AluBI AGCT 7 cut(s) 156, 248, 278, 355, 697, 769, 912
AluI AGCT 7 cut(s) 156, 248, 278, 355, 697, 769, 912
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 1 cut(s) 699
AlwI GGATC 1 cut(s) 842
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 4 cut(s) 44, 97, 185, 453
ApeKI GCWGC 7 cut(s) 156, 269, 400, 769, 977, 1064, 1074
ApoI RAATTY 2 cut(s) 1016, 1084
AseI ATTAAT 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 44, 98
AsuC2I CCSGG 2 cut(s) 189, 904
AsuHPI GGTGA 7 cut(s) 202, 500, 569, 639, 665, 683, 1082
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 914
BarI GAAGNNNNNNTAC 2 cut(s) 913, 945
BbsI GAAGAC 3 cut(s) 13, 69, 381
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 7 cut(s) 143, 256, 412, 756, 964, 1051, 1061
BccI CCATC 5 cut(s) 258, 650, 734, 887, 998
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 2 cut(s) 231, 502
BcnI CCSGG 2 cut(s) 189, 904
BcoDI GTCTC 1 cut(s) 699
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 254, 558, 570
BisI GCNGC 8 cut(s) 157, 270, 401, 770, 978, 1065, 1072, 1075
BlsI GCNGC 8 cut(s) 158, 271, 402, 771, 979, 1066, 1073, 1076
BmcAI AGTACT 2 cut(s) 562, 922
Bme1390I CCNGG 3 cut(s) 102, 189, 904
BmgT120I GGNCC 2 cut(s) 44, 98
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 102, 189, 904
BmsI GCATC 4 cut(s) 134, 201, 593, 998
BpiI GAAGAC 3 cut(s) 13, 69, 381
BplI GAGNNNNNCTC 4 cut(s) 464, 496, 821, 853
BpmI CTGGAG 2 cut(s) 341, 723
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 189, 904
BsaBI GATNNNNATC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 47, 100, 101
BsaWI WCCGGW 2 cut(s) 1080, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 656, 740
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 4 cut(s) 326, 638, 706, 717
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 233
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 47, 100, 101
BseGI GGATG 5 cut(s) 234, 584, 642, 1009, 1013
BseJI GATNNNNATC 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 472, 656, 740
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 305, 361, 1101
BseNI ACTGG 4 cut(s) 326, 638, 706, 717
BseRI GAGGAG 2 cut(s) 236, 922
BseSI GKGCMC 1 cut(s) 1043
BseX3I CGGCCG 1 cut(s) 185
BseXI GCAGC 7 cut(s) 143, 256, 412, 756, 964, 1051, 1061
Bsh1236I CGCG 3 cut(s) 201, 596, 998
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 4 cut(s) 46, 99, 187, 455
BsiEI CGRYCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 7 cut(s) 56, 160, 184, 188, 904, 1081, 1093
BslFI GGGAC 1 cut(s) 886
BslI CCNNNNNNNGG 3 cut(s) 472, 656, 740
BsmAI GTCTC 1 cut(s) 699
BsmFI GGGAC 1 cut(s) 886
BsnI GGCC 4 cut(s) 46, 99, 187, 455
Bsp1286I GDGCHC 2 cut(s) 914, 1043
Bsp143I GATC 4 cut(s) 113, 231, 502, 847
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 4 cut(s) 201, 998, 1046, 1071
BspANI GGCC 4 cut(s) 46, 99, 187, 455
BspCNI CTCAG 3 cut(s) 304, 360, 1102
BspFNI CGCG 3 cut(s) 201, 596, 998
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 434
BspPI GGATC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 4 cut(s) 326, 638, 706, 717
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 47, 100, 101
BssMI GATC 4 cut(s) 113, 231, 502, 847
BssNAI GTATAC 1 cut(s) 1128
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 1128
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 380, 946
Bst6I CTCTTC 2 cut(s) 255, 883
BstACI GRCGYC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 161, 1069
BstDEI CTNAG 4 cut(s) 164, 291, 347, 1110
BstDSI CCRYGG 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 5 cut(s) 234, 584, 642, 1009, 1013
BstFNI CGCG 3 cut(s) 201, 596, 998
BstKTI GATC 4 cut(s) 116, 234, 505, 850
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 4 cut(s) 113, 231, 502, 847
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 5 cut(s) 52, 153, 198, 275, 461
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 100, 187, 902
BstSLI GKGCMC 1 cut(s) 1043
BstUI CGCG 3 cut(s) 201, 596, 998
BstV1I GCAGC 7 cut(s) 143, 256, 412, 756, 964, 1051, 1061
BstV2I GAAGAC 3 cut(s) 13, 69, 381
BstXI CCANNNNNNTGG 1 cut(s) 701
BstZ17I GTATAC 1 cut(s) 1128
BstZI CGGCCG 1 cut(s) 185
BsuRI GGCC 4 cut(s) 46, 99, 187, 455
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 234, 584, 642, 1009, 1013
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 161, 1069
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 44, 98
CseI GACGC 2 cut(s) 61, 585
Csp6I GTAC 5 cut(s) 82, 366, 561, 921, 994
CviAII CATG 8 cut(s) 48, 218, 451, 500, 512, 773, 840, 1021
CviQI GTAC 5 cut(s) 82, 366, 561, 921, 994
DdeI CTNAG 4 cut(s) 164, 291, 347, 1110
DpnI GATC 4 cut(s) 115, 233, 504, 849
DpnII GATC 4 cut(s) 113, 231, 502, 847
DraI TTTAAA 1 cut(s) 801
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 2 cut(s) 185, 453
EagI CGGCCG 1 cut(s) 185
Eam1104I CTCTTC 2 cut(s) 255, 883
EarI CTCTTC 2 cut(s) 255, 883
Ecl136II GAGCTC 1 cut(s) 912
EclXI CGGCCG 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 914
Eco52I CGGCCG 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 912
Eco57I CTGAAG 2 cut(s) 356, 393
EcoICRI GAGCTC 1 cut(s) 912
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 1016
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 8 cut(s) 51, 221, 454, 503, 515, 776, 843, 1024
FalI AAGNNNNNCTT 3 cut(s) 30, 907, 939
FaqI GGGAC 1 cut(s) 886
FatI CATG 8 cut(s) 47, 217, 450, 499, 511, 772, 839, 1020
FbaI TGATCA 2 cut(s) 231, 502
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 8 cut(s) 157, 270, 401, 770, 978, 1065, 1072, 1075
FokI GGATG 5 cut(s) 221, 571, 649, 1016, 1020
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 8 cut(s) 157, 270, 401, 770, 978, 1065, 1072, 1075
FspBI CTAG 3 cut(s) 254, 558, 570
GluI GCNGC 8 cut(s) 157, 270, 401, 770, 978, 1065, 1072, 1075
GsuI CTGGAG 2 cut(s) 341, 723
HaeIII GGCC 4 cut(s) 46, 99, 187, 455
HapII CCGG 7 cut(s) 56, 160, 184, 188, 904, 1081, 1093
HgaI GACGC 2 cut(s) 61, 585
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 8 cut(s) 51, 221, 454, 503, 515, 776, 843, 1024
HinfI GANTC 2 cut(s) 810, 970
HpaII CCGG 7 cut(s) 56, 160, 184, 188, 904, 1081, 1093
HphI GGTGA 7 cut(s) 202, 500, 569, 639, 665, 683, 1082
Hpy166II GTNNAC 3 cut(s) 171, 647, 1128
Hpy188I TCNGA 6 cut(s) 294, 350, 852, 887, 989, 1056
Hpy188III TCNNGA 3 cut(s) 89, 358, 500
Hpy8I GTNNAC 3 cut(s) 171, 647, 1128
HpyAV CCTTC 2 cut(s) 296, 423
HpyCH4III ACNGT 2 cut(s) 380, 946
HpyCH4V TGCA 4 cut(s) 147, 772, 980, 1011
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 153, 198, 275, 461
HpyF3I CTNAG 4 cut(s) 164, 291, 347, 1110
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 8 cut(s) 51, 221, 454, 503, 515, 776, 843, 1024
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 231, 502
Kzo9I GATC 4 cut(s) 113, 231, 502, 847
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 3 cut(s) 360, 438, 909
Lsp1109I GCAGC 7 cut(s) 143, 256, 412, 756, 964, 1051, 1061
LweI GCATC 4 cut(s) 134, 201, 593, 998
MaeI CTAG 3 cut(s) 254, 558, 570
MaeIII GTNAC 3 cut(s) 20, 203, 757
MalI GATC 4 cut(s) 115, 233, 504, 849
MboI GATC 4 cut(s) 113, 231, 502, 847
MhlI GDGCHC 2 cut(s) 914, 1043
MlsI TGGCCA 1 cut(s) 455
MluI ACGCGT 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 1 cut(s) 819
MmeI TCCRAC 3 cut(s) 10, 624, 758
Mox20I TGGCCA 1 cut(s) 455
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 455
MseI TTAA 3 cut(s) 524, 546, 800
MslI CAYNNNNRTG 3 cut(s) 74, 449, 510
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 7 cut(s) 56, 160, 184, 188, 904, 1081, 1093
MspR9I CCNGG 3 cut(s) 102, 189, 904
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 3 cut(s) 201, 596, 998
MwoI GCNNNNNNNGC 5 cut(s) 52, 153, 198, 275, 461
NaeI GCCGGC 1 cut(s) 161
NciI CCSGG 2 cut(s) 189, 904
NcoI CCATGG 1 cut(s) 47
NdeII GATC 4 cut(s) 113, 231, 502, 847
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 8 cut(s) 51, 221, 454, 503, 515, 776, 843, 1024
NlaIV GGNNCC 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 1 cut(s) 499
PasI CCCWGGG 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 970
PflMI CCANNNNNTGG 2 cut(s) 656, 740
PfoI TCCNGGA 1 cut(s) 902
PkrI GCNGC 8 cut(s) 158, 271, 402, 771, 979, 1066, 1073, 1076
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
PshBI ATTAAT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 434
PspPI GGNCC 2 cut(s) 44, 98
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 5 cut(s) 83, 367, 562, 922, 995
RsaNI GTAC 5 cut(s) 82, 366, 561, 921, 994
RseI CAYNNNNRTG 3 cut(s) 74, 449, 510
SacI GAGCTC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 524, 546, 800
SatI GCNGC 8 cut(s) 157, 270, 401, 770, 978, 1065, 1072, 1075
Sau3AI GATC 4 cut(s) 113, 231, 502, 847
Sau96I GGNCC 2 cut(s) 44, 98
ScaI AGTACT 2 cut(s) 562, 922
SchI GAGTC 1 cut(s) 819
ScrFI CCNGG 3 cut(s) 102, 189, 904
SduI GDGCHC 2 cut(s) 914, 1043
SfaNI GCATC 4 cut(s) 134, 201, 593, 998
SmiMI CAYNNNNRTG 3 cut(s) 74, 449, 510
SmlI CTYRAG 1 cut(s) 913
SmoI CTYRAG 1 cut(s) 913
SpeI ACTAGT 1 cut(s) 557
SsiI CCGC 4 cut(s) 201, 998, 1046, 1071
SspI AATATT 1 cut(s) 544
SspMI CTAG 3 cut(s) 254, 558, 570
SstI GAGCTC 1 cut(s) 914
StyD4I CCNGG 3 cut(s) 100, 187, 902
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 380, 946
TaqI TCGA 3 cut(s) 619, 627, 808
TatI WGTACW 2 cut(s) 560, 920
TauI GCSGC 1 cut(s) 1074
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 3 cut(s) 524, 546, 800
Tru9I TTAA 3 cut(s) 524, 546, 800
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 7 cut(s) 156, 269, 400, 769, 977, 1064, 1074
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 6 cut(s) 653, 792, 837, 878, 915, 1009
TspRI CASTG 1 cut(s) 425
Van91I CCANNNNNTGG 2 cut(s) 656, 740
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 2 cut(s) 1016, 1084
XmiI GTMKAC 1 cut(s) 1127
XspI CTAG 3 cut(s) 254, 558, 570
ZrmI AGTACT 2 cut(s) 562, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.