AT3G48020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011856
Physical Location & Seq
Forward (+)
17724400 .. 17725198
799 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48020.1

Sequence Viewer

Length: 408 bp
ATGGAAGTTGGACAAGCGAATCCGCTTCTTGGTGAATCGTCTTGCTGTTCCACCACCGTTAAATCCTCCTGGTGGCAGCGAATTCACAGAAACAACCACCAGGAGCCACGGTGGTGGGTGCGAGCGTTTCTAAAGATCCGAGAATGGTCGGAGATCGTGGCTGGGCCACGGTGGAAGACTTTCATCCGCAGATTCAACCGCGATCCACGCCGAGGTCAAGACTGGGACGATAGTGACAAATTCCGATACGATCCTGTGAGTTACACTTTGAGTTTCGAAGATGAAGACAAAGACGACGACGACGAAGCTGGAGTCGGTGGAGTCAGAAGCTTCTCGATGCGCTACGCTTCTGTCCCCGTTGCTTCAGGTAAATCTCCCGCTGTTATCAGCGTTGACGCCGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.64

Weight (kDa)

6.73

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 4 cut(s) 23, 187, 199, 378
AclWI GGATC 3 cut(s) 130, 197, 245
AcsI RAATTY 2 cut(s) 81, 239
AcuI CTGAAG 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 3 cut(s) 29, 72, 212
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 68, 99
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 2 cut(s) 308, 330
AluI AGCT 2 cut(s) 308, 330
AlwI GGATC 3 cut(s) 130, 197, 245
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 81, 239
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 182, 291
BbvI GCAGC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 70, 101
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 70, 101
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 2 cut(s) 70, 101
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 182, 291
BpmI CTGGAG 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 107, 167, 211
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 72, 212
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 2 cut(s) 70, 101
BseDI CCNNGG 3 cut(s) 107, 167, 211
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 29, 72, 212
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 166
BslFI GGGAC 2 cut(s) 239, 338
BslI CCNNNNNNNGG 3 cut(s) 29, 72, 212
BsmFI GGGAC 2 cut(s) 239, 338
BsnI GGCC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 276
Bsp143I GATC 4 cut(s) 135, 153, 202, 250
BspACI CCGC 4 cut(s) 23, 187, 199, 378
BspANI GGCC 1 cut(s) 166
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 3 cut(s) 130, 197, 245
BspT104I TTCGAA 1 cut(s) 276
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 107, 167, 211
BssMI GATC 4 cut(s) 135, 153, 202, 250
BssNI GRCGYC 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 70, 101
Bst4CI ACNGT 3 cut(s) 58, 111, 171
BstACI GRCGYC 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 123
BstDSI CCRYGG 2 cut(s) 107, 167
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 4 cut(s) 138, 156, 205, 253
BstMBI GATC 4 cut(s) 135, 153, 202, 250
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 2 cut(s) 70, 101
BstSCI CCNGG 2 cut(s) 68, 99
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 182, 291
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 2 cut(s) 107, 167
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 164
CviJI RGCY 5 cut(s) 106, 161, 166, 308, 330
CviKI_1 RGCY 5 cut(s) 106, 161, 166, 308, 330
DpnI GATC 4 cut(s) 137, 155, 204, 252
DpnII GATC 4 cut(s) 135, 153, 202, 250
Eco57I CTGAAG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 68, 99
FaqI GGGAC 2 cut(s) 239, 338
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 77
GlaI GCGC 1 cut(s) 341
GluI GCNGC 1 cut(s) 77
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 166
HhaI GCGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 396
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 5 cut(s) 19, 35, 192, 312, 321
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 4 cut(s) 140, 151, 245, 326
Hpy188III TCNNGA 2 cut(s) 218, 334
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 3 cut(s) 299, 302, 305
HpyCH4III ACNGT 3 cut(s) 58, 111, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 396
HspAI GCGC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 135, 153, 202, 250
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 55, 82, 86, 113, 147, 208, 267, 294, 351
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 233, 260
MalI GATC 4 cut(s) 137, 155, 204, 252
MboI GATC 4 cut(s) 135, 153, 202, 250
MboII GAAGA 3 cut(s) 187, 290, 296
MflI RGATCY 1 cut(s) 135
MluCI AATT 2 cut(s) 81, 239
MlyI GAGTC 2 cut(s) 321, 330
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 76, 206
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 70, 101
MvaI CCWGG 2 cut(s) 70, 101
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 4 cut(s) 135, 153, 202, 250
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 233
NspV TTCGAA 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 19, 35, 192
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 320, 329
PpsI GAGTC 2 cut(s) 320, 329
Psp6I CCWGG 2 cut(s) 68, 99
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 68, 99
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 4 cut(s) 135, 153, 202, 250
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 2 cut(s) 321, 330
ScrFI CCNGG 2 cut(s) 70, 101
SetI ASST 4 cut(s) 217, 310, 332, 370
SfaNI GCATC 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 2 cut(s) 81, 239
SsiI CCGC 4 cut(s) 23, 187, 199, 378
StyD4I CCNGG 2 cut(s) 68, 99
TaaI ACNGT 3 cut(s) 58, 111, 171
TaqI TCGA 2 cut(s) 276, 335
TasI AATT 2 cut(s) 81, 239
TfiI GAWTC 3 cut(s) 19, 35, 192
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 172, 297
XapI RAATTY 2 cut(s) 81, 239
XmnI GAANNNNTTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.