pycom06g15780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011856
Physical Location & Seq
Forward (+)
20284011 .. 20284681
671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15780.2

Sequence Viewer

Length: 603 bp
ATGGTTAAGGCACAACTGGAAAAAATCATAATGGTAAGGCACAGCTGGAACCTCACCACACGACAGGTCGTTCCGTGCACAGAAAAGTCAGAATGGTCACCGGCAGTCCCCGAGAGCGACGAAATTTCTCAATTGGGGGTTTTCCAAAGCCCCTCTCTCTCTCTCTCTTCGATAGTCATGGAGGACATTGACATGGAGTCAATAGGCCATGGAGGAACAAGTTCGCGCTGCTGCTTCTGTCTTCCGTCGTCGTGGTCGCGGATGCGGACCTGCCAAAACGACGAACGGTGGTGGTCCCGAGGCATCAGAGCCTTGTACAAGCTTCGAGAGTGGTCCGAGATCGTCGCCGGCCCCAGGTGGAAGACTTTCATCCGCCGATTCAACAGAAGCAGAAGCATAGGCCGTGGGGCCGGCGCCAGCAATCACGGGAAATTCCAATACGATCCCTTGAGTTACGCTCTGAACTTCGACGAGGGCCCGGTCGACGAAGACGACGAAGTCGTGGGGTTCCGGAATTTCTCGGTCCGGTACGCCTCGTTTCATCAACCGGCAAAGTCCGGGGGTTTGACGGAATCGGGCACAGACGTGGCGGTGTACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.61

Weight (kDa)

6.9

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 483
AccII CGCG 2 cut(s) 226, 259
AccIII TCCGGA 1 cut(s) 510
AciI CCGC 4 cut(s) 259, 265, 373, 590
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 3 cut(s) 123, 431, 514
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 3 cut(s) 317, 530, 596
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 1 cut(s) 382
AhdI GACNNNNNGTC 1 cut(s) 196
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 353
AleI CACNNNNGTG 1 cut(s) 584
AluBI AGCT 2 cut(s) 45, 322
AluI AGCT 2 cut(s) 45, 322
Alw21I GWGCWC 1 cut(s) 80
Alw44I GTGCAC 1 cut(s) 76
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 2 cut(s) 110, 297
Aor13HI TCCGGA 1 cut(s) 510
AoxI GGCC 5 cut(s) 205, 349, 400, 408, 475
ApaI GGGCCC 1 cut(s) 479
ApaLI GTGCAC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 228, 231
ApoI RAATTY 3 cut(s) 123, 431, 514
Asp700I GAANNNNTTC 2 cut(s) 220, 365
AspLEI GCGC 2 cut(s) 228, 416
AspS9I GGNCC 8 cut(s) 267, 294, 333, 350, 408, 475, 476, 523
AsuC2I CCSGG 2 cut(s) 479, 559
AsuHPI GGTGA 2 cut(s) 46, 90
AvaI CYCGRG 2 cut(s) 110, 297
AvaII GGWCC 4 cut(s) 267, 294, 333, 523
BaeGI GKGCMC 3 cut(s) 80, 479, 581
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 479
BbsI GAAGAC 3 cut(s) 233, 368, 495
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 215, 218
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 1 cut(s) 355
BcnI CCSGG 2 cut(s) 479, 559
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 278
BisI GCNGC 2 cut(s) 229, 232
BlsI GCNGC 2 cut(s) 230, 233
Bme1390I CCNGG 3 cut(s) 355, 479, 559
Bme18I GGWCC 4 cut(s) 267, 294, 333, 523
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 2 cut(s) 110, 297
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 8 cut(s) 267, 294, 333, 350, 408, 475, 476, 523
BmiI GGNNCC 7 cut(s) 50, 296, 352, 409, 415, 477, 509
BmrFI CCNGG 3 cut(s) 355, 479, 559
BmsI GCATC 2 cut(s) 252, 312
BpiI GAAGAC 3 cut(s) 233, 368, 495
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpuEI CTTGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 479, 559
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 5 cut(s) 208, 298, 353, 403, 558
BsaWI WCCGGW 2 cut(s) 510, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 4 cut(s) 100, 347, 410, 547
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 510
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 5 cut(s) 208, 298, 353, 403, 558
BseGI GGATG 2 cut(s) 267, 369
BseLI CCNNNNNNNGG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 21
BseSI GKGCMC 3 cut(s) 80, 479, 581
BseXI GCAGC 2 cut(s) 215, 218
Bsh1236I CGCG 2 cut(s) 226, 259
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 207, 351, 402, 410, 477
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 80
BsiHKCI CYCGRG 2 cut(s) 110, 297
BsiSI CCGG 8 cut(s) 101, 348, 411, 479, 511, 526, 548, 558
BslFI GGGAC 2 cut(s) 92, 280
BslI CCNNNNNNNGG 1 cut(s) 354
BsmFI GGGAC 2 cut(s) 92, 280
BsnI GGCC 5 cut(s) 207, 351, 402, 410, 477
BsoBI CYCGRG 2 cut(s) 110, 297
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 80, 479, 581
Bsp13I TCCGGA 1 cut(s) 510
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 339, 442
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 4 cut(s) 259, 265, 373, 590
BspANI GGCC 5 cut(s) 207, 351, 402, 410, 477
BspEI TCCGGA 1 cut(s) 510
BspFNI CGCG 2 cut(s) 226, 259
BspLI GGNNCC 7 cut(s) 50, 296, 352, 409, 415, 477, 509
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 4 cut(s) 100, 347, 410, 547
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 4 cut(s) 100, 347, 410, 547
BssECI CCNNGG 5 cut(s) 208, 298, 353, 403, 558
BssMI GATC 2 cut(s) 339, 442
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 414
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 349, 412, 418
BstDSI CCRYGG 2 cut(s) 208, 403
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 2 cut(s) 267, 369
BstFNI CGCG 2 cut(s) 226, 259
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 228, 416
BstKTI GATC 2 cut(s) 342, 445
BstMBI GATC 2 cut(s) 339, 442
BstMCI CGRYCG 1 cut(s) 483
BstNI CCWGG 1 cut(s) 355
BstPI GGTNACC 1 cut(s) 96
BstSCI CCNGG 3 cut(s) 353, 477, 557
BstSLI GKGCMC 3 cut(s) 80, 479, 581
BstUI CGCG 2 cut(s) 226, 259
BstV1I GCAGC 2 cut(s) 215, 218
BstV2I GAAGAC 3 cut(s) 233, 368, 495
BsuRI GGCC 5 cut(s) 207, 351, 402, 410, 477
BtgI CCRYGG 2 cut(s) 208, 403
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 267, 369
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 349, 412, 418
CfoI GCGC 2 cut(s) 228, 416
Cfr10I RCCGGY 4 cut(s) 100, 347, 410, 547
Cfr13I GGNCC 8 cut(s) 267, 294, 333, 350, 408, 475, 476, 523
CpoI CGGWCCG 1 cut(s) 523
Csp6I GTAC 3 cut(s) 316, 529, 595
CspI CGGWCCG 1 cut(s) 523
CviAII CATG 3 cut(s) 178, 193, 209
CviJI RGCY 9 cut(s) 45, 150, 207, 311, 322, 351, 402, 410, 477
CviKI_1 RGCY 9 cut(s) 45, 150, 207, 311, 322, 351, 402, 410, 477
CviQI GTAC 3 cut(s) 316, 529, 595
DinI GGCGCC 1 cut(s) 415
DpnI GATC 2 cut(s) 341, 444
DpnII GATC 2 cut(s) 339, 442
DrdI GACNNNNNNGTC 1 cut(s) 497
DriI GACNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 172
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 4 cut(s) 267, 294, 333, 523
Eco88I CYCGRG 2 cut(s) 110, 297
Eco91I GGTNACC 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 181, 196, 212
FaiI YATR 5 cut(s) 29, 179, 194, 210, 398
FaqI GGGAC 2 cut(s) 92, 280
FatI CATG 3 cut(s) 177, 192, 208
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 229, 232
FokI GGATG 2 cut(s) 274, 356
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 229, 232
GlaI GCGC 2 cut(s) 227, 415
GluI GCNGC 2 cut(s) 229, 232
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 5 cut(s) 207, 351, 402, 410, 477
HapII CCGG 8 cut(s) 101, 348, 411, 479, 511, 526, 548, 558
HhaI GCGC 2 cut(s) 228, 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 3 cut(s) 181, 196, 212
Hin6I GCGC 2 cut(s) 226, 414
HinP1I GCGC 2 cut(s) 226, 414
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 3 cut(s) 197, 378, 572
HpaII CCGG 8 cut(s) 101, 348, 411, 479, 511, 526, 548, 558
HphI GGTGA 2 cut(s) 46, 90
Hpy166II GTNNAC 3 cut(s) 78, 484, 595
Hpy188I TCNGA 4 cut(s) 91, 308, 337, 462
Hpy188III TCNNGA 3 cut(s) 297, 326, 511
Hpy8I GTNNAC 3 cut(s) 78, 484, 595
Hpy99I CGWCG 8 cut(s) 122, 250, 253, 284, 347, 473, 488, 497
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 585
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 3 cut(s) 181, 196, 212
HspAI GCGC 2 cut(s) 226, 414
KasI GGCGCC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 510
KroI GCCGGC 2 cut(s) 347, 410
KroNI GCCGGC 2 cut(s) 349, 412
Kzo9I GATC 2 cut(s) 339, 442
Lsp1109I GCAGC 2 cut(s) 215, 218
LweI GCATC 2 cut(s) 252, 312
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 2 cut(s) 96, 452
MalI GATC 2 cut(s) 341, 444
MboI GATC 2 cut(s) 339, 442
MboII GAAGA 4 cut(s) 159, 233, 373, 500
MfeI CAATTG 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 80, 479, 581
MluCI AATT 4 cut(s) 123, 131, 431, 514
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 7 cut(s) 62, 163, 175, 206, 293, 466, 544
MroI TCCGGA 1 cut(s) 510
MroNI GCCGGC 2 cut(s) 347, 410
MroXI GAANNNNTTC 2 cut(s) 220, 365
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 191, 584
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 8 cut(s) 101, 348, 411, 479, 511, 526, 548, 558
MspR9I CCNGG 3 cut(s) 355, 479, 559
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 355
MvnI CGCG 2 cut(s) 226, 259
NaeI GCCGGC 2 cut(s) 349, 412
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 2 cut(s) 479, 559
NcoI CCATGG 1 cut(s) 208
NdeII GATC 2 cut(s) 339, 442
NgoMIV GCCGGC 2 cut(s) 347, 410
NlaIII CATG 3 cut(s) 181, 196, 212
NlaIV GGNNCC 7 cut(s) 50, 296, 352, 409, 415, 477, 509
NmuCI GTSAC 1 cut(s) 96
OliI CACNNNNGTG 1 cut(s) 584
PcsI WCGNNNNNNNCGW 3 cut(s) 489, 492, 498
PdiI GCCGGC 2 cut(s) 349, 412
PdmI GAANNNNTTC 2 cut(s) 220, 365
PfeI GAWTC 2 cut(s) 378, 572
PflFI GACNNNGTC 1 cut(s) 497
PkrI GCNGC 2 cut(s) 230, 233
PleI GAGTC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 353
PspEI GGTNACC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 7 cut(s) 50, 296, 352, 409, 415, 477, 509
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 8 cut(s) 267, 294, 333, 350, 408, 475, 476, 523
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 3 cut(s) 317, 530, 596
RsaNI GTAC 3 cut(s) 316, 529, 595
RseI CAYNNNNRTG 2 cut(s) 191, 584
Rsr2I CGGWCCG 1 cut(s) 523
RsrII CGGWCCG 1 cut(s) 523
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 229, 232
Sau3AI GATC 2 cut(s) 339, 442
Sau96I GGNCC 8 cut(s) 267, 294, 333, 350, 408, 475, 476, 523
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 3 cut(s) 355, 479, 559
SduI GDGCHC 3 cut(s) 80, 479, 581
SetI ASST 7 cut(s) 47, 54, 69, 272, 324, 359, 588
SfaNI GCATC 2 cut(s) 252, 312
SfoI GGCGCC 1 cut(s) 415
SinI GGWCC 4 cut(s) 267, 294, 333, 523
SmiMI CAYNNNNRTG 2 cut(s) 191, 584
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 4 cut(s) 123, 131, 431, 514
SsiI CCGC 4 cut(s) 259, 265, 373, 590
SspDI GGCGCC 1 cut(s) 413
StyD4I CCNGG 3 cut(s) 353, 477, 557
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 588
TaqI TCGA 4 cut(s) 170, 325, 468, 483
TaqII GACCGA 1 cut(s) 511
TasI AATT 4 cut(s) 123, 131, 431, 514
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 2 cut(s) 378, 572
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 2 cut(s) 228, 231
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 358, 530
TspGWI ACGGA 3 cut(s) 63, 234, 584
Tth111I GACNNNGTC 1 cut(s) 497
VneI GTGCAC 1 cut(s) 76
VpaK11BI GGWCC 4 cut(s) 267, 294, 333, 523
XapI RAATTY 3 cut(s) 123, 431, 514
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 2 cut(s) 220, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.