RLG00000004231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011856
Physical Location & Seq
Reverse (-)
57467267 .. 57467671
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004231

Sequence Viewer

Length: 405 bp
ATGGACATGGACGACTTGGAGTCAATAGGCCATAATAGGAGCAGCTCGCGCTGTTGCTTTTGCATACCTTCGTCGTCGCGGTGGTGGGACCGGGTTCGGAACGACGACGGGTGGTGGTCCAGAGGCATCAGGGCCCTTTACAAGGTCAGGGAGTGGTCCGAGATCGTCGCCGGTCCCAAGTGGAAGACTTTCATCCGGCGCTTCAGTCGGAGCAAGAGCGGCGGCGGAGGTAGGCACGGCAAGTTTCAGTACGATCCGTTGAGTTACGCTTTGAACTTCGACGAGGGCCCGGTGGCGGAGGAGGAGGACGAGTCGGGAGGGTTTCGCGATTTCTCGGCCCGGTTCGCTCCGGTTAAGAGCTTGGACCCGGTTCTGTTGGGGAAGGACGTTGCGGTTCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

7.74

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 3 cut(s) 49, 79, 327
AciI CCGC 6 cut(s) 79, 219, 222, 225, 296, 392
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 142, 295
AgsI TTSAA 1 cut(s) 274
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 2 cut(s) 45, 360
AluI AGCT 2 cut(s) 45, 360
AlwI GGATC 1 cut(s) 248
AoxI GGCC 4 cut(s) 28, 132, 286, 336
ApaI GGGCCC 2 cut(s) 136, 290
ApeKI GCWGC 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 51, 201
AsuC2I CCSGG 4 cut(s) 92, 290, 340, 368
AvaII GGWCC 5 cut(s) 88, 117, 156, 173, 364
BaeGI GKGCMC 2 cut(s) 136, 290
BanII GRGCYC 2 cut(s) 136, 290
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 4 cut(s) 92, 290, 340, 368
BfoI RGCGCY 1 cut(s) 202
BisI GCNGC 3 cut(s) 43, 220, 223
BlsI GCNGC 3 cut(s) 44, 221, 224
Bme1390I CCNGG 4 cut(s) 92, 290, 340, 368
Bme18I GGWCC 5 cut(s) 88, 117, 156, 173, 364
BmeRI GACNNNNNGTC 1 cut(s) 19
BmiI GGNNCC 5 cut(s) 89, 134, 175, 288, 366
BmrFI CCNGG 4 cut(s) 92, 290, 340, 368
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 191
BpuMI CCSGG 4 cut(s) 92, 290, 340, 368
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 295
Bse118I RCCGGY 1 cut(s) 170
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 142, 295
BseRI GAGGAG 2 cut(s) 314, 317
BseSI GKGCMC 2 cut(s) 136, 290
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 3 cut(s) 49, 79, 327
BshFI GGCC 4 cut(s) 30, 134, 288, 338
BsiSI CCGG 7 cut(s) 91, 171, 196, 290, 340, 350, 368
BslFI GGGAC 2 cut(s) 101, 159
BslI CCNNNNNNNGG 2 cut(s) 142, 295
BsmFI GGGAC 2 cut(s) 101, 159
BsnI GGCC 4 cut(s) 30, 134, 288, 338
Bsp120I GGGCCC 2 cut(s) 132, 286
Bsp1286I GDGCHC 2 cut(s) 136, 290
Bsp143I GATC 2 cut(s) 162, 253
Bsp68I TCGCGA 1 cut(s) 327
BspACI CCGC 6 cut(s) 79, 219, 222, 225, 296, 392
BspANI GGCC 4 cut(s) 30, 134, 288, 338
BspFNI CGCG 3 cut(s) 49, 79, 327
BspLI GGNNCC 5 cut(s) 89, 134, 175, 288, 366
BspPI GGATC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 162, 253
BstC8I GCNNGC 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 3 cut(s) 49, 79, 327
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 51, 201
BstKTI GATC 2 cut(s) 165, 256
BstMBI GATC 2 cut(s) 162, 253
BstMWI GCNNNNNNNGC 4 cut(s) 48, 219, 344, 398
BstSCI CCNGG 4 cut(s) 90, 288, 338, 366
BstSLI GKGCMC 2 cut(s) 136, 290
BstUI CGCG 3 cut(s) 49, 79, 327
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 4 cut(s) 30, 134, 288, 338
BtsCI GGATG 1 cut(s) 192
BtuMI TCGCGA 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 2 cut(s) 51, 201
Cfr10I RCCGGY 1 cut(s) 170
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 7, 398
CviJI RGCY 6 cut(s) 30, 45, 134, 288, 338, 360
CviKI_1 RGCY 6 cut(s) 30, 45, 134, 288, 338, 360
CviQI GTAC 1 cut(s) 250
DpnI GATC 2 cut(s) 164, 255
DpnII GATC 2 cut(s) 162, 253
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
EciI GGCGGA 2 cut(s) 240, 311
Eco24I GRGCYC 2 cut(s) 136, 290
Eco47I GGWCC 5 cut(s) 88, 117, 156, 173, 364
Eco57I CTGAAG 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 3 cut(s) 132, 133, 286
EcoT38I GRGCYC 2 cut(s) 136, 290
FaeI CATG 2 cut(s) 10, 401
FaiI YATR 4 cut(s) 8, 33, 65, 399
FaqI GGGAC 2 cut(s) 101, 159
FatI CATG 2 cut(s) 6, 397
Fnu4HI GCNGC 3 cut(s) 43, 220, 223
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 2 cut(s) 136, 290
Fsp4HI GCNGC 3 cut(s) 43, 220, 223
GlaI GCGC 2 cut(s) 50, 200
GluI GCNGC 3 cut(s) 43, 220, 223
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 4 cut(s) 30, 134, 288, 338
HapII CCGG 7 cut(s) 91, 171, 196, 290, 340, 350, 368
HhaI GCGC 2 cut(s) 51, 201
Hin1II CATG 2 cut(s) 10, 401
Hin6I GCGC 2 cut(s) 49, 199
HinP1I GCGC 2 cut(s) 49, 199
HinfI GANTC 2 cut(s) 20, 311
HpaII CCGG 7 cut(s) 91, 171, 196, 290, 340, 350, 368
Hpy188I TCNGA 3 cut(s) 99, 160, 210
Hpy188III TCNNGA 3 cut(s) 120, 315, 326
Hpy99I CGWCG 6 cut(s) 76, 79, 107, 110, 170, 284
HpyAV CCTTC 2 cut(s) 78, 376
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 219, 344, 398
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 2 cut(s) 10, 401
HspAI GCGC 2 cut(s) 49, 199
Kzo9I GATC 2 cut(s) 162, 253
LmnI GCTCC 3 cut(s) 39, 210, 352
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 164, 255
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 162, 253
MboII GAAGA 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 136, 290
MlyI GAGTC 2 cut(s) 29, 320
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 7 cut(s) 116, 221, 277, 292, 295, 298, 311
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 354
MspI CCGG 7 cut(s) 91, 171, 196, 290, 340, 350, 368
MspR9I CCNGG 4 cut(s) 92, 290, 340, 368
MvnI CGCG 3 cut(s) 49, 79, 327
MwoI GCNNNNNNNGC 4 cut(s) 48, 219, 344, 398
NciI CCSGG 4 cut(s) 92, 290, 340, 368
NdeII GATC 2 cut(s) 162, 253
NlaIII CATG 2 cut(s) 10, 401
NlaIV GGNNCC 5 cut(s) 89, 134, 175, 288, 366
NmeAIII GCCGAG 1 cut(s) 314
NruI TCGCGA 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 44, 221, 224
PleI GAGTC 2 cut(s) 28, 319
PpsI GAGTC 2 cut(s) 28, 319
PspN4I GGNNCC 5 cut(s) 89, 134, 175, 288, 366
PspOMI GGGCCC 2 cut(s) 132, 286
RruI TCGCGA 1 cut(s) 327
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 3 cut(s) 43, 220, 223
Sau3AI GATC 2 cut(s) 162, 253
SchI GAGTC 2 cut(s) 29, 320
ScrFI CCNGG 4 cut(s) 92, 290, 340, 368
SduI GDGCHC 2 cut(s) 136, 290
SetI ASST 6 cut(s) 47, 70, 147, 232, 362, 390
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 5 cut(s) 88, 117, 156, 173, 364
SsiI CCGC 6 cut(s) 79, 219, 222, 225, 296, 392
StyD4I CCNGG 4 cut(s) 90, 288, 338, 366
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 279
TauI GCSGC 2 cut(s) 222, 225
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 181, 386
TspGWI ACGGA 1 cut(s) 246
VpaK11BI GGWCC 5 cut(s) 88, 117, 156, 173, 364
XagI CCTNNNNNAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.