Rroxscaffold_3G00261690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011856
Physical Location & Seq
Reverse (-)
55879207 .. 55879623
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261690.1

Sequence Viewer

Length: 417 bp
ATGGACATGGACGACTTGGAGTCAATAGGCCATAATAGGAACAGCTCGCGCTGTTGCTTTTGCATCCCTTCGTCGTCGCGGTGGTGGGACCGGGTTCGGAACGACGACGGATGGTGGTCCAGAGGCATGAGGGCCATTTACAAGGTCAGGGAGTGGTCCGAGATCGTCGCCGGTCCCAAGTGGAAGACTTTCATCCGGCGCTTCAATCGGAGCAAGAGCGGCGGCGGAAGCGGCGGTGGAGGTAGGCACGGCAAGTTTCAGTACGATCCGTTGAGTTACGCTTTGAACTTCGACGAGGGCCCGGTGGCGGAGGAGGAGGACGAGTCGGGAGGGTTTCGCGATTTCTCGGCCCGGTTCGCTCCGGTGAAGAGCTCGGACCCGGTTCTGTTGGGGAAGGACGTTGCGGTTCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.6

Weight (kDa)

7.74

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 3 cut(s) 49, 79, 339
AciI CCGC 8 cut(s) 79, 219, 222, 225, 231, 234, 308, 404
AclWI GGATC 1 cut(s) 260
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 205, 286
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 2 cut(s) 45, 372
AluI AGCT 2 cut(s) 45, 372
Alw21I GWGCWC 1 cut(s) 374
AlwI GGATC 1 cut(s) 260
AoxI GGCC 4 cut(s) 28, 132, 298, 348
ApaI GGGCCC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 51, 201
AspS9I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 298, 299, 349, 376
AsuC2I CCSGG 4 cut(s) 92, 302, 352, 380
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 5 cut(s) 88, 117, 156, 173, 376
BaeGI GKGCMC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 302, 374
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 374
BccI CCATC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 265
BcnI CCSGG 4 cut(s) 92, 302, 352, 380
BfoI RGCGCY 1 cut(s) 202
BisI GCNGC 3 cut(s) 220, 223, 232
BlsI GCNGC 3 cut(s) 221, 224, 233
Bme1390I CCNGG 4 cut(s) 92, 302, 352, 380
Bme18I GGWCC 5 cut(s) 88, 117, 156, 173, 376
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 298, 299, 349, 376
BmiI GGNNCC 4 cut(s) 89, 175, 300, 378
BmrFI CCNGG 4 cut(s) 92, 302, 352, 380
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 191
BpuMI CCSGG 4 cut(s) 92, 302, 352, 380
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 170
BseGI GGATG 3 cut(s) 63, 116, 192
BseLI CCNNNNNNNGG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 326, 329
BseSI GKGCMC 1 cut(s) 302
Bsh1236I CGCG 3 cut(s) 49, 79, 339
BshFI GGCC 4 cut(s) 30, 134, 300, 350
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 7 cut(s) 91, 171, 196, 302, 352, 362, 380
BslFI GGGAC 2 cut(s) 101, 159
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 101, 159
BsnI GGCC 4 cut(s) 30, 134, 300, 350
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 302, 374
Bsp143I GATC 2 cut(s) 162, 265
Bsp68I TCGCGA 1 cut(s) 339
BspACI CCGC 8 cut(s) 79, 219, 222, 225, 231, 234, 308, 404
BspANI GGCC 4 cut(s) 30, 134, 300, 350
BspFNI CGCG 3 cut(s) 49, 79, 339
BspLI GGNNCC 4 cut(s) 89, 175, 300, 378
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 162, 265
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 47
BstF5I GGATG 3 cut(s) 63, 116, 192
BstFNI CGCG 3 cut(s) 49, 79, 339
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 51, 201
BstKTI GATC 2 cut(s) 165, 268
BstMBI GATC 2 cut(s) 162, 265
BstMWI GCNNNNNNNGC 5 cut(s) 219, 228, 231, 356, 410
BstSCI CCNGG 4 cut(s) 90, 300, 350, 378
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 3 cut(s) 49, 79, 339
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 4 cut(s) 30, 134, 300, 350
BtsCI GGATG 3 cut(s) 63, 116, 192
BtuMI TCGCGA 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 2 cut(s) 51, 201
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 298, 299, 349, 376
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 7, 127, 410
CviJI RGCY 6 cut(s) 30, 45, 134, 300, 350, 372
CviKI_1 RGCY 6 cut(s) 30, 45, 134, 300, 350, 372
CviQI GTAC 1 cut(s) 262
DpnI GATC 2 cut(s) 164, 267
DpnII GATC 2 cut(s) 162, 265
DriI GACNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 362
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 2 cut(s) 240, 323
Ecl136II GAGCTC 1 cut(s) 372
Eco24I GRGCYC 2 cut(s) 302, 374
Eco47I GGWCC 5 cut(s) 88, 117, 156, 173, 376
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 302, 374
FaeI CATG 3 cut(s) 10, 130, 413
FaiI YATR 4 cut(s) 8, 33, 128, 411
FaqI GGGAC 2 cut(s) 101, 159
FatI CATG 3 cut(s) 6, 126, 409
Fnu4HI GCNGC 3 cut(s) 220, 223, 232
FokI GGATG 3 cut(s) 50, 123, 179
FriOI GRGCYC 2 cut(s) 302, 374
Fsp4HI GCNGC 3 cut(s) 220, 223, 232
GlaI GCGC 2 cut(s) 50, 200
GluI GCNGC 3 cut(s) 220, 223, 232
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 4 cut(s) 30, 134, 300, 350
HapII CCGG 7 cut(s) 91, 171, 196, 302, 352, 362, 380
HhaI GCGC 2 cut(s) 51, 201
Hin1II CATG 3 cut(s) 10, 130, 413
Hin6I GCGC 2 cut(s) 49, 199
HinP1I GCGC 2 cut(s) 49, 199
HinfI GANTC 2 cut(s) 20, 323
HpaII CCGG 7 cut(s) 91, 171, 196, 302, 352, 362, 380
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 4 cut(s) 99, 160, 210, 376
Hpy188III TCNNGA 3 cut(s) 120, 327, 338
Hpy99I CGWCG 6 cut(s) 76, 79, 107, 110, 170, 296
HpyAV CCTTC 2 cut(s) 78, 388
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 5 cut(s) 219, 228, 231, 356, 410
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 3 cut(s) 10, 130, 413
HspAI GCGC 2 cut(s) 49, 199
Kzo9I GATC 2 cut(s) 162, 265
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 210, 364
LpnPI CCDG 9 cut(s) 104, 133, 133, 184, 209, 315, 365, 375, 393
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 164, 267
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 162, 265
MboII GAAGA 2 cut(s) 196, 379
MhlI GDGCHC 2 cut(s) 302, 374
MlyI GAGTC 2 cut(s) 29, 332
MnlI CCTC 8 cut(s) 116, 123, 233, 289, 304, 307, 310, 323
MroXI GAANNNNTTC 1 cut(s) 188
MspI CCGG 7 cut(s) 91, 171, 196, 302, 352, 362, 380
MspR9I CCNGG 4 cut(s) 92, 302, 352, 380
MvnI CGCG 3 cut(s) 49, 79, 339
MwoI GCNNNNNNNGC 5 cut(s) 219, 228, 231, 356, 410
NciI CCSGG 4 cut(s) 92, 302, 352, 380
NdeII GATC 2 cut(s) 162, 265
NlaIII CATG 3 cut(s) 10, 130, 413
NlaIV GGNNCC 4 cut(s) 89, 175, 300, 378
NmeAIII GCCGAG 1 cut(s) 326
NruI TCGCGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 221, 224, 233
PleI GAGTC 2 cut(s) 28, 331
PpsI GAGTC 2 cut(s) 28, 331
Psp124BI GAGCTC 1 cut(s) 374
PspN4I GGNNCC 4 cut(s) 89, 175, 300, 378
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 9 cut(s) 88, 117, 132, 156, 173, 298, 299, 349, 376
RruI TCGCGA 1 cut(s) 339
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 362
SatI GCNGC 3 cut(s) 220, 223, 232
Sau3AI GATC 2 cut(s) 162, 265
Sau96I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 298, 299, 349, 376
SchI GAGTC 2 cut(s) 29, 332
ScrFI CCNGG 4 cut(s) 92, 302, 352, 380
SduI GDGCHC 2 cut(s) 302, 374
SetI ASST 5 cut(s) 47, 147, 244, 374, 402
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 5 cut(s) 88, 117, 156, 173, 376
SsiI CCGC 8 cut(s) 79, 219, 222, 225, 231, 234, 308, 404
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 4 cut(s) 90, 300, 350, 378
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 291
TauI GCSGC 3 cut(s) 222, 225, 234
TspDTI ATGAA 2 cut(s) 181, 398
TspGWI ACGGA 2 cut(s) 123, 258
VpaK11BI GGWCC 5 cut(s) 88, 117, 156, 173, 376
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.