Prupe.5G176600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011856
Physical Location & Seq
Forward (+)
14966714 .. 14968081
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G176600.1

Sequence Viewer

Length: 621 bp
ATGGTCACCGCCAATTGCCGGTCACTTGATATGTTTCCGTTACAAACTTCCATTTCTTCTCTTACCATCTTTATAAAACACACACGCACACCGTTTTACAGAGAGAGACGCAATTGCTCAATTGGGGGTTTTCCTCAGCCTCCTCTCTCTCTTTTCCTCTTGTCGTCTGTACAAGTCCATATGGCCATGGAAGACGTTGACTTGGAGTCAATAGGCCACGGAAGAACCAGTTCGCGCTGCTGCTTCTGTATCCCGGCGTCGTCGGCCTGGTGGGAGCGGATGCGAGCGAACCAAAACAACGACAGCTGGTGGTCCCGAGGCTTCAAAGCCTTCTACAAGCTTCGAGAGTGGTCCGAAATCGTCGCCGGCCCAAGGTGGAAGACTTTCATTCGCCGATTCAACCGGAATAGAAGCGGAGGCGGCGGCAGCTCCGGTGCTGGGCGGCACCACGGGAAATTCCAATACGACCCGTTGAGTTATGCTCTGAACTTCGACGAAGGCAAGGAGGACGAAGACGACGAAGTCGGCGGATTTCGCGATTTCTCGACCCGGTTCGCCTCGCTTCCTCCGGTCAGGTCCGGGTTACCAGAATCAAGTAAAGACGTGGCGGTGTACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.41

Weight (kDa)

9.07

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AasI GACNNNNNNGTC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 277
AccII CGCG 2 cut(s) 235, 537
AciI CCGC 8 cut(s) 9, 277, 414, 420, 423, 442, 528, 608
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 2 cut(s) 171, 614
AfiI CCNNNNNNNGG 3 cut(s) 18, 372, 438
AgsI TTSAA 2 cut(s) 325, 400
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 3 cut(s) 306, 340, 429
AluI AGCT 3 cut(s) 306, 340, 429
Alw26I GTCTC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 4 cut(s) 183, 214, 264, 367
ApeKI GCWGC 3 cut(s) 237, 240, 426
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 2 cut(s) 229, 383
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 4 cut(s) 312, 351, 368, 576
AsuC2I CCSGG 3 cut(s) 254, 550, 580
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 3 cut(s) 312, 351, 576
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 444
BbsI GAAGAC 3 cut(s) 198, 386, 519
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 224, 227, 438
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 3 cut(s) 254, 550, 580
BcoDI GTCTC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 6 cut(s) 238, 241, 421, 424, 427, 443
BlsI GCNGC 6 cut(s) 239, 242, 422, 425, 428, 444
Bme1390I CCNGG 4 cut(s) 254, 268, 550, 580
Bme18I GGWCC 3 cut(s) 312, 351, 576
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 4 cut(s) 312, 351, 368, 576
BmiI GGNNCC 2 cut(s) 314, 446
BmrFI CCNGG 4 cut(s) 254, 268, 550, 580
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 3 cut(s) 198, 386, 519
BplI GAGNNNNNCTC 2 cut(s) 466, 498
Bpu10I CCTNAGC 1 cut(s) 135
BpuMI CCSGG 3 cut(s) 254, 550, 580
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 5 cut(s) 186, 217, 316, 371, 448
BsaWI WCCGGW 3 cut(s) 402, 431, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 372, 438
Bse118I RCCGGY 2 cut(s) 18, 365
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 5 cut(s) 186, 217, 316, 371, 448
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 18, 372, 438
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 224, 227, 438
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 235, 537
BshFI GGCC 4 cut(s) 185, 216, 266, 369
BshNI GGYRCC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 8 cut(s) 19, 254, 366, 403, 432, 550, 569, 579
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 3 cut(s) 18, 372, 438
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 4 cut(s) 185, 216, 266, 369
BsoBI CYCGRG 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 186
Bsp68I TCGCGA 1 cut(s) 537
BspACI CCGC 8 cut(s) 9, 277, 414, 420, 423, 442, 528, 608
BspANI GGCC 4 cut(s) 185, 216, 266, 369
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 2 cut(s) 235, 537
BspLI GGNNCC 2 cut(s) 314, 446
BspT107I GGYRCC 1 cut(s) 444
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 18, 365
BsrGI TGTACA 1 cut(s) 169
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 2 cut(s) 18, 365
BssECI CCNNGG 5 cut(s) 186, 217, 316, 371, 448
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 186, 371
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 285, 367
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 3 cut(s) 186, 217, 448
BstEII GGTNACC 2 cut(s) 4, 582
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 235, 537
BstHHI GCGC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 263, 420, 426, 534
BstNI CCWGG 1 cut(s) 268
BstPI GGTNACC 2 cut(s) 4, 582
BstSCI CCNGG 4 cut(s) 252, 266, 548, 578
BstUI CGCG 2 cut(s) 235, 537
BstV1I GCAGC 3 cut(s) 224, 227, 438
BstV2I GAAGAC 3 cut(s) 198, 386, 519
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 4 cut(s) 185, 216, 266, 369
BtgI CCRYGG 3 cut(s) 186, 217, 448
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 1 cut(s) 285
BtuMI TCGCGA 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 285, 367
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 2 cut(s) 18, 365
Cfr13I GGNCC 4 cut(s) 312, 351, 368, 576
CseI GACGC 2 cut(s) 117, 246
Csp6I GTAC 2 cut(s) 170, 613
CviAII CATG 1 cut(s) 187
CviQI GTAC 2 cut(s) 170, 613
DdeI CTNAG 1 cut(s) 135
DrdI GACNNNNNNGTC 1 cut(s) 521
DriI GACNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 521
EaeI YGGCCR 1 cut(s) 183
Eam1105I GACNNNNNGTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 543
Eco130I CCWWGG 2 cut(s) 186, 371
Eco47I GGWCC 3 cut(s) 312, 351, 576
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 2 cut(s) 4, 582
EcoO65I GGTNACC 2 cut(s) 4, 582
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 186, 371
ErhI CCWWGG 2 cut(s) 186, 371
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 32, 74, 180, 182, 188, 480
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 180
Fnu4HI GCNGC 6 cut(s) 238, 241, 421, 424, 427, 443
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 6 cut(s) 238, 241, 421, 424, 427, 443
GlaI GCGC 1 cut(s) 236
GluI GCNGC 6 cut(s) 238, 241, 421, 424, 427, 443
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 4 cut(s) 185, 216, 266, 369
HapII CCGG 8 cut(s) 19, 254, 366, 403, 432, 550, 569, 579
HgaI GACGC 2 cut(s) 117, 246
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 206, 396, 590
HpaII CCGG 8 cut(s) 19, 254, 366, 403, 432, 550, 569, 579
Hpy166II GTNNAC 2 cut(s) 199, 613
Hpy188I TCNGA 2 cut(s) 355, 486
Hpy188III TCNNGA 4 cut(s) 315, 344, 536, 544
Hpy8I GTNNAC 2 cut(s) 199, 613
Hpy99I CGWCG 5 cut(s) 262, 265, 365, 497, 521
HpyAV CCTTC 2 cut(s) 340, 491
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 2 cut(s) 195, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 420, 426, 534
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 2 cut(s) 195, 603
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 235
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 274, 434
Lsp1109I GCAGC 3 cut(s) 224, 227, 438
LweI GCATC 1 cut(s) 270
MaeII ACGT 2 cut(s) 195, 603
MaeIII GTNAC 4 cut(s) 4, 21, 39, 582
MbiI CCGCTC 1 cut(s) 277
MboII GAAGA 5 cut(s) 48, 203, 234, 391, 524
MfeI CAATTG 3 cut(s) 13, 112, 120
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 4 cut(s) 13, 112, 120, 455
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 9 cut(s) 144, 150, 153, 167, 311, 410, 499, 568, 576
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 365
MroXI GAANNNNTTC 2 cut(s) 229, 383
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 8 cut(s) 19, 254, 366, 403, 432, 550, 569, 579
MspR9I CCNGG 4 cut(s) 254, 268, 550, 580
MunI CAATTG 3 cut(s) 13, 112, 120
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 235, 537
MwoI GCNNNNNNNGC 4 cut(s) 263, 420, 426, 534
NaeI GCCGGC 1 cut(s) 367
NciI CCSGG 3 cut(s) 254, 550, 580
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 314, 446
NmuCI GTSAC 2 cut(s) 4, 21
NruI TCGCGA 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PdiI GCCGGC 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 229, 383
PfeI GAWTC 2 cut(s) 396, 590
PflFI GACNNNGTC 1 cut(s) 521
PkrI GCNGC 6 cut(s) 239, 242, 422, 425, 428, 444
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 266
PspEI GGTNACC 2 cut(s) 4, 582
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 314, 446
PspPI GGNCC 4 cut(s) 312, 351, 368, 576
PsyI GACNNNGTC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 306
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 2 cut(s) 171, 614
RsaNI GTAC 2 cut(s) 170, 613
SatI GCNGC 6 cut(s) 238, 241, 421, 424, 427, 443
Sau96I GGNCC 4 cut(s) 312, 351, 368, 576
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 4 cut(s) 254, 268, 550, 580
SetI ASST 7 cut(s) 198, 308, 342, 377, 431, 578, 606
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 3 cut(s) 312, 351, 576
Sse9I AATT 4 cut(s) 13, 112, 120, 455
SsiI CCGC 8 cut(s) 9, 277, 414, 420, 423, 442, 528, 608
StyD4I CCNGG 4 cut(s) 252, 266, 548, 578
StyI CCWWGG 2 cut(s) 186, 371
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 2 cut(s) 198, 606
TaqI TCGA 3 cut(s) 343, 492, 545
TasI AATT 4 cut(s) 13, 112, 120, 455
TatI WGTACW 1 cut(s) 169
TauI GCSGC 3 cut(s) 423, 426, 445
TfiI GAWTC 2 cut(s) 396, 590
TseFI GTSAC 2 cut(s) 4, 21
TseI GCWGC 3 cut(s) 237, 240, 426
Tsp45I GTSAC 2 cut(s) 4, 21
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 2 cut(s) 27, 234
Tth111I GACNNNGTC 1 cut(s) 521
VpaK11BI GGWCC 3 cut(s) 312, 351, 576
XapI RAATTY 1 cut(s) 455
XmnI GAANNNNTTC 2 cut(s) 229, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.